LOC110496064


Basic Information

Item Value
gene id LOC110496064
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34474547 ~ 34482054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952537.1
GTACAAACACATGTGCTATAGTGCGGCAGAGGTGTGTCACTCCTGGCTCTCTTGCTAGCTTGCCTGCTTAGCTTCCTTCCTTTTTTTCCCTGCATCCCGCGTGTGCACACACCCCCTTCGCTTTTCCCCTTTTCTTCCCTACTCGCCTCGGCCAGGCTGTTTCTCCACCGACCAGAGAGAAGGTAGGAGGGGTTGTGGGCTTGCTTTTTGTGCCACACTGACTCAGGCACTTCGGTAGATCAGTGCCTTTTTACTTCCAAGGGAAACTGATTCATAGGGAACAtttcctgtgttttgtgggactgaaatatatatatattcccccaACATCTTAGAAGAAATAAGGAAATACACAAGACTGTAGGACTTTGTTAAAACATTTGAAGTCTTAATACTTGGCAGCCGGTCCTGCTATTGTATAACCAGAAGTGACTGCATTCAGTTTCCTCTGCATTAAACAAAATAAGTTAATTAGGCCTTAAAAGAAAACCCAAGAAGTCAAAATGGTTGCTGGCATGGTAATGCCCCTGGCAGATCTGAGGGCCATTTATGAGCTCCTCTTTCGGGATGGCGTCATGGTGGCCAAGAAGGACAGGCGTCCCCAGTGCATGCACCCTGAGATCCAGGGGGTTGCTAACCTGAAGGTGATAAGGGCCATGGGCTCCCTCAAATCCAAAGGCTTTGTGCGGGAGACCTTTGCATGGAAGCATTCCTACTGGTACCTCACCAACGAGGGTATCGTGTACCTGCGGGACTACTTGCGTCTGCCACCTGAGATCGTGCCCTCCTCCCTGCAGCGCGTGCGTCGCCCCGCGTCCACCCTGAACATGATGCGTCGGGCCAGCCGTGGAGTGGTCCAGACCGTGGAGGGCCCCCCCTTCTACGCCCCCAAACCCAGGGTCGGACAGGAGAGCCAGCAGGGCATGATAGACCGCCAGGGCTACCGCCACAAGAGGGGACTCCCCGGTGAGGAGGAGGCCTCGGGTGAGAGGCTCGCAATGAGGTTTAGGGGCTCCTACCAGGGCCACGGACGCGGAGCTGTAGGGGAGCCTGGAGCTGAGACCCAGACTTTCTTCAGAAGAGGCCAAGGTTTCCACAGAGAGCAACATCGTGTGCCAGAAGAGGGCCAGAGGAGAGGCTTTGCTCCACGTGGCCCTGCTTATCCTCTTCCTCTGGAGGCTAGGCCTGTCAGATCCCCTGCCCCAGCTGGAGATGTCAAACCATTTGTGCCTGAAGTTCCTGCTCCTATTAAGCAAGAGAAGACCAAGGAAGTTGCTGTGCTCGTGCCTTTTGCAGAGATCATTGAACCAGCATTCATCCCTGCAGTGGAACCAGAGGCCCAAGCCCCAGCCCTAGAATTGGAGAAAGTGATGGAGGAGGTGACAGTTGAGGAAGTGTCTTTTGAGGCCCCCATGCCTGTTGAAGAGGCTGAGCCACAAAAGGAAGAGATCACCGTTGTGGAAACTGCAGAGGTGCTCTCAGATGTGTGGGAACAGGAGGAGCCAAAGCCAGTTGTGGAGGAGATAGTAGAAGCAGTTGAAAAGGCCCCAGAGCCTGAGGTGTTTGAGGTGGGTGAGGCCATTAAGGAGGAGGTCCTTGAGGCCACCGCACCTGTTGAAGAGTTTGAAAAAGAGCCCAAACAATCCACTGAAGGGTCTGCTGAAGAGTCCACTGAAGAGGTGGAAGATGTTGCTGAGAAAGTGACTGCCACGGAGATGGTGGTTGTTGAAGAAGCCGCTGCCATTCAGGCAGTGGTTGTCAGGGATGCCCCTGAAGTTCCTCCCGAAGACCTCCCACATGATACTGATATTGAGATACTCGAAGAGCCCAAAGAAGTTGAGGAGGAACCATCCACTCATGAGGAGCCTGAGGCCTCTTCGTCTGAGGCTTCTTCTGATTCTGAGGCCTCTGAGCCTGAACCAATCACAGCTGCTGTTGCTACTGAAGCCGAGAGTGAACCAGTTACAATCACAGAAATCATTGAAGCTGAGAGTGAGCCAGCTACAACCACAGAAAACATTGAAGCTGAGAGTGAGCCAGCTACAACCACAGAAAACATTGAAGCTGAGAGTGAGCCAGCTACAACCACAGAAAACATTGAAGCTGAGAGTGAGCCAGCTACAACCACAGAAAACATTGAAGCTGAGAGTGAGCCATCTACAACAACAGAAGGCGCCGTAGAGGCCAAAAGTAAACCAGTTACAATTACAGAAGCCATACCGGAGGTTAAGGTCTCTGTCCCATTGACCAAAGCTGATTACACTGAGCCAGACTCTGACACTGACCTTCCGACCCCTCTACCCCCAGTCACAGAGGACTTCACAGACCTCACAGAGTACCATCAGCAGACAGTGCTAGAGCACATCACTCAAGAAATACCCGCTGGTATGGCAACCTTCAGGTCTGAGATGCCACTTGAGGTAACCTCCCAGGTAGTAAGCTCCACAGTGTTTGAGAACCAAATCTCCCAGTCTGAGGCCATGGAACCCCCCTCCATTGGAATGGCAGGCACTGTCTTACAGCTTGGACTTGAGAAAGAGGCTAGTCCTCTCTTTGGGGCTGAGTGTACTGCCCCTGTCATCCCCTCTGAGTGTCCCATCGCCCCCTCTGAGTGCCCCGTTGCCGCTCTGAAAAGTTCCCTTTTCCAGGATGACTGGGCCTTTCTCACAGAGGAAcctgatgaggaggaggaggtgaagaagaTCTGGCCTGATGCTCTACAAGgacaatgacccaacacatctccagactgtgtaagggctatttgaccaataagga
>XM_021571734.2
GTACAAACACATGTGCTATAGTGCGGCAGAGGTGTGTCACTCCTGGCTCTCTTGCTAGCTTGCCTGCTTAGCTTCCTTCCTTTTTTTCCCTGCATCCCGCGTGTGCACACACCCCCTTCGCTTTTCCCCTTTTCTTCCCTACTCGCCTCGGCCAGGCTGTTTCTCCACCGACCAGAGAGAAGGTAGGAGGGGTTGTGGGCTTGCTTTTTGTGCCACACTGACTCAGGCACTTCGGTAGATCAGTGCCTTTTTACTTCCAAGGGAAACTGATTCATAGGGAACAtttcctgtgttttgtgggactgaaatatatatatattcccccaACATCTTAGAAGAAATAAGGAAATACACAAGACTGTAGGACTTTGTTAAAACATTTGAAGTCTTAATACTTGGCAGCCGGTCCTGCTATTGTATAACCAGAAGTGACTGCATTCAGTTTCCTCTGCATTAAACAAAATAAGTTAATTAGGCCTTAAAAGAAAACCCAAGAAGTCAAAATGGTTGCTGGCATGGTAATGCCCCTGGCAGATCTGAGGGCCATTTATGAGCTCCTCTTTCGGGATGGCGTCATGGTGGCCAAGAAGGACAGGCGTCCCCAGTGCATGCACCCTGAGATCCAGGGGGTTGCTAACCTGAAGGTGATAAGGGCCATGGGCTCCCTCAAATCCAAAGGCTTTGTGCGGGAGACCTTTGCATGGAAGCATTCCTACTGGTACCTCACCAACGAGGGTATCGTGTACCTGCGGGACTACTTGCGTCTGCCACCTGAGATCGTGCCCTCCTCCCTGCAGCGCGTGCGTCGCCCCGCGTCCACCCTGAACATGATGCGTCGGGCCAGCCGTGGAGTGGTCCAGACCGTGGAGGGCCCCCCCTTCTACGCCCCCAAACCCAGGGTCGGACAGGAGAGCCAGCAGGGCATGATAGACCGCCAGGGCTACCGCCACAAGAGGGGACTCCCCGGTGAGGAGGAGGCCTCGGGTGAGAGGCTCGCAATGAGGTTTAGGGGCTCCTACCAGGGCCACGGACGCGGAGCTGTAGGGGAGCCTGGAGCTGAGACCCAGACTTTCTTCAGAAGAGGCCAAGGTTTCCACAGAGAGCAACATCGTGTGCCAGAAGAGGGCCAGAGGAGAGGCTTTGCTCCACGTGGCCCTGCTTATCCTCTTCCTCTGGAGGCTAGGCCTGTCAGATCCCCTGCCCCAGCTGGAGATGTCAAACCATTTGTGCCTGAAGTTCCTGCTCCTATTAAGCAAGAGAAGACCAAGGAAGTTGCTGTGCTCGTGCCTTTTGCAGAGATCATTGAACCAGCATTCATCCCTGCAGTGGAACCAGAGGCCCAAGCCCCAGCCCTAGAATTGGAGAAAGTGATGGAGGAGGTGACAGTTGAGGAAGTGTCTTTTGAGGCCCCCATGCCTGTTGAAGAGGCTGAGCCACAAAAGGAAGAGATCACCGTTGTGGAAACTGCAGAGGTGCTCTCAGATGTGTGGGAACAGGAGGAGCCAAAGCCAGTTGTGGAGGAGATAGTAGAAGCAGTTGAAAAGGCCCCAGAGCCTGAGGTGTTTGAGGTGGGTGAGGCCATTAAGGAGGAGGTCCTTGAGGCCACCGCACCTGTTGAAGAGTTTGAAAAAGAGCCCAAACAATCCACTGAAGGGTCTGCTGAAGAGTCCACTGAAGAGGTGGAAGATGTTGCTGAGAAAGTGACTGCCACGGAGATGGTGGTTGTTGAAGAAGCCGCTGCCATTCAGGCAGTGGTTGTCAGGGATGCCCCTGAAGTTCCTCCCGAAGACCTCCCACATGATACTGATATTGAGATACTCGAAGAGCCCAAAGAAGTTGAGGAGGAACCATCCACTCATGAGGAGCCTGAGGCCTCTTCGTCTGAGGCTTCTTCTGATTCTGAGGCCTCTGAGCCTGAACCAATCACAGCTGCTGTTGCTACTGAAGCCGAGAGTGAACCAGTTACAATCACAGAAATCATTGAAGCTGAGAGTGAGCCAGCTACAACCACAGAAAACATTGAAGCTGAGAGTGAGCCAGCTACAACCACAGAAAACATTGAAGCTGAGAGTGAGCCAGCTACAACCACAGAAAACATTGAAGCTGAGAGTGAGCCAGCTACAACCACAGAAAACATTGAAGCTGAGAGTGAGCCATCTACAACAACAGAAGGCGCCGTAGAGGCCAAAAGTAAACCAGTTACAATTACAGAAGCCATACCGGAGGTTAAGGTCTCTGTCCCATTGACCAAAGCTGATTACACTGAGCCAGACTCTGACACTGACCTTCCGACCCCTCTACCCCCAGTCACAGAGGACTTCACAGACCTCACAGAGTACCATCAGCAGACAGTGCTAGAGCACATCACTCAAGAAATACCCGCTGGTATGGCAACCTTCAGGTCTGAGATGCCACTTGAGGTAACCTCCCAGGTAGTAAGCTCCACAGTGTTTGAGAACCAAATCTCCCAGTCTGAGGCCATGGAACCCCCCTCCATTGGAATGGCAGGCACTGTCTTACAGCTTGGACTTGAGAAAGAGGCTAGTCCTCTCTTTGGGGCTGAGTGTACTGCCCCTGTCATCCCCTCTGAGTGTCCCATCGCCCCCTCTGAGTGCCCCGTTGCCGCTCTGAAAAGTTCCCTTTTCCAGGATGACTGGGCCTTTCTCACAGAGGAAcctgatgaggaggaggaggtgaagaagaTCTGGCCTGATGCTCTACAAGtcCTGGCCTGTGGATCCTTCCTCCACATGGCCTGTTTCAGCCCCCCTGAGAACTTTCCATTCTCTGCAGGCTGATAAATGACTCAGCAAGAATGACTCAGCAAGATtgtattggaccaggtctctcttggaaaagagatattATCTCAATCAGaaaaaaacctgtataaataaaggtaaaa

Function

NR:

description
fibrous sheath CABYR-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952537.1 False 2778 mRNA 0.53 2 34474547 34478226
XM_021571734.2 True 2905 mRNA 0.52 2 34474547 34482054

Neighbor

gene id symbol gene type direction distance location
LOC110496061 LOC106588154 coding upstream 173895 34297184 ~ 34300652 (+)
trhrb LOC106588145 coding upstream 209077 34261312 ~ 34265470 (+)
LOC110496058 LOC106588349 coding upstream 340813 34127192 ~ 34133734 (+)
ints8 ints8 coding upstream 358265 34092247 ~ 34116282 (+)
LOC110496056 dpy19l4 coding upstream 385987 34080108 ~ 34088560 (+)
LOC110496065 LOC106588226 coding downstream 136500 34618554 ~ 34624236 (+)
LOC110496068 slc52a2 coding downstream 145402 34627456 ~ 34632957 (+)
LOC110496067 LOC106588229 coding downstream 151172 34633226 ~ 34640621 (+)
mbpa LOC106588233 coding downstream 401438 34883492 ~ 34898413 (+)
LOC110496074 NA coding downstream 436483 34918537 ~ 34921751 (+)
G1541496 NA non-coding upstream 162811 34306850 ~ 34311736 (+)
G1541404 NA non-coding upstream 184125 34217282 ~ 34290422 (+)
G1541344 NA non-coding upstream 296041 34178290 ~ 34178506 (+)
G1541304 NA non-coding upstream 322235 34151433 ~ 34152312 (+)
G1541610 NA non-coding downstream 75573 34557627 ~ 34558111 (+)
pleca LOC100194709 non-coding downstream 92077 34376096 ~ 34579125 (+)
G1541643 NA non-coding downstream 144423 34626477 ~ 34626974 (+)
G1541644 NA non-coding downstream 161004 34643058 ~ 34643288 (+)
G1540996 NA other upstream 395473 34078718 ~ 34079074 (+)
LOC110496043 LOC106588212 other upstream 936983 33535229 ~ 33537569 (+)
G1540551 NA other upstream 983426 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 1016123 33455560 ~ 33458964 (+)
G1541989 NA other downstream 800549 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 893190 35373871 ~ 35386463 (+)
G1542052 LOC106588245 other downstream 919783 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 996781 35478835 ~ 35502933 (+)

Expression


Co-expression Network