sall3b (LOC106588232)


Basic Information

Item Value
gene id sall3b
gene name LOC106588232
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34795394 ~ 34808500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952540.1
ACATTCGGCTGCAGGGCTTCTCATAATGGACTAGAGGCGGAAGCTTCTAAAGAATAGCAGCTGCGGGCAAGGAAGACCAAGAACCCGCTCCACGGAACGACCATCGCAATGAGATTCGCCGTCGGTCTGGAAATAGGAACATTACTTTTACGCAATAACTAGATTGTTATGCACGAAAACAGAGATAGGGATTCGATCACGGCCCCGTGACATCTTTTTGGGCACCTGAACCGGACTCTTGCTatcttcattttttttgttttactttccCCCTCCTCCGCTCAGCTTCATGAAAAATAGAAGACGAGGAGGATAAAGGCAATGGGCAACACTTTTCCAGCCAGCACTTTCTTATCCATGTGTAGACCTCCAAAATAAAGTACAATACTCAATGCGTGGGAAAAAAACAGAAATGAAAGTGGAGTAAATTAAAAGAAAGGACTTCTGATAACAATGGGACTTAAACTTAAAGACGCGTTGGGGAAAAGGTAGGCTACAATAAAAACGAATGGCacaaatacatttacaaaagtGTGGCGGGTAAAAACAGAACAAAACCAACCAGAAGGGAGAGAAATGTTCTCGACTTAGTAATGTCCATCACTGTTGTATGGTGGACCGTGCGGAAAGACAGGTGAATAGGAAGCAAAGTATAGTGTAATTATCAAATCCATCCCTCATTTCCATATCTAGTGTGGGTCAGCTGGACCTTAGCCAATCCCCCATCGAAAGCCAATCCCCCATCGAAAGCCACCAAGAGTCATCAAGCATTATCCTCCATCATAATTACACCGACATGCGCAATCTGCACATGGATGCTGATGTATCCGCCAAAGGCAACAAGAGCAACTAGCAGAGAACTGACAACATGTCCCGCCGCAAGCAAGCGAAGCCACAACATCTCAAATTGGACGAAGAAGCGTTGCAAACCGACGTCGCCACAGAACATGCTCTATTGGAGGGAATGGATGAGGAGGAGCGCCGCAGTGGCATTGAGGAAACCCATGTGTGTAGAAACATTGCTGAGTACTTCACCTGGGCCGAACTGTATGAGCACCAGAGAAGCTGCACAGAGGACCTTCCTCAGGTCCTCATTGTGAAGGAAGATGAGAGGATCCCTGAACCTGAGGGGTCCCCAGCTGGATCCTCTCCAACCCTCAGCCTGGCCATTCTTAGCCTGGCCCACAGGGACTCAGCAGACATGGAGTCAGCGGACGGGGGCCTTGAACTGGTGGAGCCTATGAATTATAATGATAATGACAGCACAGATGTGTTAGAGGAGATGAACATGGGTGAGAAGGAGGATGAATCCATGGAGGTGGAGCAGCAGCACCACGGCAAATATAAGTCATCTAGCTCCCAGAGTCCCCCAGATATAACTGAGTTGGCTATCCCTTCAGCTCAGTCGTCCTCTGTGACTAGCAGCATGCCCAGTACGAACGTAACACTGGAGATCCTCCACGGTACCCGGGTGGCTGTTGCCCAGTTCTCCCAGAGCCTCCACAGTAGTGGGGCAGGAGGGAAGGCGGCCACAGCGGCCATCCCAGTGATCCTAGAGCACCTGCTGGCTTTGCAGGAGCAACAGGTCCACCAGTTGCAGCTTATTGAGCAGATCCGTAGCCAGGTGGCCTTCATGAACAGACAGCCCACACAAACAGCACTAAACCCAGTCTCCAGGGCCCTATCACTGGCACCAAACCCTTTCCCCTCCCAAGGCCTCATTGCTCCCCCTGTCCTACCACTGTCTGGGACCATACCCTCTGCTGTTAATGGACAAGCGTCTGTGTCTTCGGCATCTGTGCTTGAAAGGTCCCACACACTCTCCAAACAAACGTCATATGGACAGGCCCACATGAGAGACGCTAGATGTACCTCAGCTCCCTCTGACAACTCTGCCCCTCCCCCTACTAGCTGCAACAATATTTCCTCATTACATCCTCCCTGCATGGGTTCATACTCACACACAAGCAGTAGCTGTACTCAGACCCTGACCTCGTCCAGCCCACTCTCCATGCAGGACCAGAGCAACAGTCTCCTCAGCTCACCATCCAGCCTGCCGTTTCTACCTCAGAGCCCCCCCAGCAGTGTCATCTTCCCCAACCCCCTGGCCAGCATCGCAGCCACGACTAATGCCCTCGACCCCCTCTCCGCCCTGATGAAGCACCACCGGAATGGCAAGCTGCCCAGTGTGTCCATGTTCGACACCAAGCCCAGCCCCGAGGAGCCCTTTTTCAAGCATAAGTGCAGGTTCTGCGCCAAAGTGTTTGGCAGCGACAGCGCGCTGCAGATCCACCTGCGCTCTCACACCGGGGAGAGGCCCTTCAAGTGCAACCTCTGCGGCAATCGCTTCTCCACTAAAGGGAACCTGAAAGTCCACTTCCAGAGACACAAAGAAAAGTATCCCCGTGTTCAGATGAACCCTTATCCAGTGCCGGAATATTTAGACAATGTGCCAACGAGCTCTGGCATTCCCTATGGCATGTCATTCCCTCCTGAAAAAACAGGAGCCACTTGGCTGGATAGCAAGCCTGTTTCAGCGACGGTACCCACCTCTATGGGCATTCAGCTTCCCTTCACTCTCACTACTATGGGAAGCTCAAGTGGATCTCTAAGTGTCACACCACCCATCAAATCTCCTTTTAGGCCTTCCCCAGCCTTAAGTGAATGTGTGTCTTTGTCGCTGAACACTACAGGCAATGAAACTAGTGTTCCCACAGCTTTAGAGTCTCCACAGTCTAATCAGGAGGGGGAATCCTCCCATGTCTTGAAAGCAGAGGAAATTCATCTGTCCCAGAACTGGATGACTAGACCCAGGGTGAGTCCACTTACTGTGGCAACAAGTAAAGCCATGACTATTACCACATCCACACCTGAGCCCAGTGCTCTGACTTCCAACTTTTCACCACTTTCCCTGGCCTCTGACCCGTTCAAAGCAAAGTTTCCATTCGGTGGCCTCCTGGACTCTATGCAAACGTCAGAGACCTCAAAGCTCCAGCAGCTGGTGGAGAACATAGACAAGAAGATAACAGACCCCAACCAGTGTATCCTCTGTCACCGCGTGCTCAGCTGCCAAAGCGCGCTGAAGATGCACTACCGTATCCACACTGGGGAGAGGCCCTTTAAATGTAAGGTGTGTGGCAGGGCTTTCACCACCAAAGGAAATCTGAATACCCACATTGGTGTCCACAGAGCAAACCCTCCTCTCCGGGTTCAACATTCATGCCCCATCTGCCAGAAAAAGTTCACCAACGCTGTAGTTCTACAGCAGCACATCCGCATGCATATGGGAGGTCAGATCTCAAACTCACCCTTAATGGACTGCCTACAGGACCTCGACAATGATCTCTCCTTCCACGAGAAGAACTTTGACAGCCTGAATAAATATGACAATGACCTCATGTATGACAACTCCatgggggaggaagaggatgatgatgaagaagaagaagaggtagAAAATATGGAGGGGGGTGTTGATACCCTTAATCCCCTGAGCTCTGTCTCTAGTTCTTCTCCCAactctgatgctgttgtcttcagCATAGCTGCACTGGAGAACCAAATGAAAATGATAGACTCCACCATGAACCTAAACCACTCCTTTGGGCTAAAGTCAATGATGAATGGTTTTATGGACAGTGAGCGCCATGCTGCTATCCACTCCTCTATAGTGGGAGAAGGACAGAATCACAATGCAGCCGGCAGCCCAACTGTGTCTGAATCGTCCACCTGTATTCATGTACCAGTGTCACCTGCGCAAAGCAATTCTGAGGTCCACCTCTGCAATTCCCCATCTGGGAAGCACAGTGGAGAGTCCCAAGAGATCACAGCCTCAGTGAAGAGTGAGCAATTTGATTCGTCCACCTCAACTCCGGTACTGGAAAATGGAGTGACTTTGGATCTGAGAGGGTTGCAACCTAACAGGCAGTGTGTGAAACAGGAGAGTCCTTACAGTACGCTGTTCCTGAGTAAAGAACGTGGTTCCAGCCAAAGCATTCCTAGCCTGATTACCAGCATTGCGCCAAGGATGATCAAATCTGAAATGAATGGGCACCATCGACCAATGAACTTCAACGAGGGGCTGCATCATCCATTTGGCCTCCAGGTCCCTGCTGCTCCTCCATCTCTGGTGAGCCCAGGAATCACCTCTCTGCTTGGGCCACCTCAACTTCGACGGACCCCGAAGCAACACAACTGCCATGCGTGTGGAAAGAACTTCTCCTCAGCCAGTGCTCTACAGATCCATGAGCGGacccacacaggggagaaacctttcGGTTGCTCCATCTGTGGCAGGGCATTCACAACTAAAGGAAACCTGAAGGTACACATGGGCACTCATATGTGGAACAACGCACCAGCCAGAAGAGGCAGGCGTCTGTCGGTGGAGAACCCCTTGGCCTTGCTGGGTGGGGAAGCTGCCATGAAGTTCGGAGAGATGTTTCAGAAGGACCTGACGGAACGGGCCATGAACGTGGATCCAGGGTTCTGGAACCGCTACGCATCAGCTATAACCAACGGCCTAGCCATGAAGAAGAATGAGATCTCAGTGATCCAGAatgggggtattctacagctttATCCCATGACGGCAGGCATGGACAGAGTCAGCACTGGGGGTAGCCCACCAATGACCAGTCTTGGAAAGACAGCCATGGACCTTGGAATTAACCGACCCGACTTTTCTTTGTTAATTGGTGACAGTAAAGAGATTGAGATCAATTAAAAATAATTTGAATGGCAGATTAATAAAATATATAGATTATACAAACAATGTAGAGAATAAATGATTGATTTATTTGTAAAAACAAGTTGACTATGTATTATATAgagataaaaaatgttttattaattcacagacctacagtatttcATTCTTTTTTTATTGAATTGTCCATATGCAAATGTTGGTTTTGCCCACACAAACAGGTTCTTTCACTTCGTCCATGGTGcttactatagacacacactctATTACTCTAGAAAGGGAAAATGTGATATAGAAATGCAAAGAGATGAATCTGTCGGTTACTCACTGCTGCTAGTTGGTGCAAAGCACAAATGTCTTTATAACGAGGCCTCACATGTAGGCCTGCAGCATTTCAAATGGAAGAATTTGTGCAAGTAACTGAGCAAGCCTAAGGTTGGACAATCATTTATTGAATTTACTTCAGCTTAAATTGCATGTCCCATTTCTTCACTGGGCTTTACTCTTGACTTTATGCAGTCTATCAGCATTTATTTCAGCTTCATCATTTAGGTTATTTTCTCTGCATCCAAAATGTATATTAGATAAAAATGTGAAAACAATCAATTGGCTTACAGATGCATACATAAACAGAATGTAAGCTATATGGTTTAGTCAAAAAGTTGAATTTTTTGTTTATCTTGTTGTTAGAGATTGAATCATTTTATCTCCTCCAATGAGAACTGTTTTTTAGATTTCTGAATTTGATGTACAGAAGAGGCATCACAGATACAAACTAGAGACATTTGCCTCTTTTCTGCATGAAGGctacagacaacaacaaaaaattagtGTGCATATGGTAGGATGAGCTAAAAAGCAATGGAAGTGGATCCTCTCAATCTCAGCAAATATTTTTACAAGCAAAATTTACTGGGCTGACAGACATCTACTGAAAGAAAATAATTTATTTGTCTAGATTACAATATTTCATGCTACTTTAAATAAATATCTACA

Function

NR:

description
PREDICTED: sal-like protein 3

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952540.1 True 5704 mRNA 0.48 6 34795394 34808500

Neighbor

gene id symbol gene type direction distance location
atp9b atp9b coding downstream 465 34735374 ~ 34794929 (-)
nfatc1 LOC106588230 coding downstream 90573 34645116 ~ 34704821 (-)
fbxl6 fbxl6 coding downstream 176027 34595231 ~ 34619367 (-)
LOC118940975 LOC106611608 coding downstream 557828 34235388 ~ 34237566 (-)
gdf6b gdf6 coding downstream 611503 34179033 ~ 34183891 (-)
zbtb22a LOC106588234 coding upstream 98623 34906715 ~ 34923956 (-)
LOC110496076 LOC106588236 coding upstream 126108 34933039 ~ 34943891 (-)
LOC110496078 LOC106588238 coding upstream 188972 34997472 ~ 34999239 (-)
LOC110496079 LOC106588239 coding upstream 203510 35012010 ~ 35016157 (-)
LOC110496800 LOC106588240 coding upstream 208478 35016978 ~ 35018421 (-)
G1542753 NA non-coding downstream 51248 34743623 ~ 34744146 (-)
G1542731 NA non-coding downstream 126407 34668766 ~ 34668987 (-)
G1542729 NA non-coding downstream 129898 34665242 ~ 34665496 (-)
G1542721 NA non-coding downstream 153165 34641813 ~ 34642229 (-)
G1542857 NA non-coding upstream 90808 34899308 ~ 34899566 (-)
G1542864 NA non-coding upstream 91647 34900147 ~ 34900382 (-)
G1542865 NA non-coding upstream 91901 34900401 ~ 34900639 (-)
G1542867 NA non-coding upstream 95643 34904143 ~ 34904354 (-)
G1542869 NA non-coding upstream 96537 34905037 ~ 34905317 (-)
G1541318 NA other downstream 632936 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1121163 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 1184501 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 1403642 33391339 ~ 33391752 (-)
G1542988 sast other upstream 329137 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 366806 35151351 ~ 35203984 (-)
LOC110496085 NA other upstream 538395 35346895 ~ 35351655 (-)
G1543128 LOC106588245 other upstream 644118 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 686822 35492995 ~ 35499681 (-)

Expression


Co-expression Network