LOC110496076 (LOC106588236)


Basic Information

Item Value
gene id LOC110496076
gene name LOC106588236
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34933039 ~ 34943891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952542.1
GTGCTGCTGATGAGACGCTGATTAGATTTATCAGATTTAGTTGATTTCGTAAAAATGTGTGGGCCTGTTCGCTGGTTGTGTGAGATAATGCTATATTATTTGAATACGCAATGCCAGCCCTGGCGAAACATCTCTTCAACAAGTAGCCTAGCCTACGGTGTTGCTCCATAAAAGAACAGCGCTGTGTAGATAAATGTGTTGATCCATCAGAAGGGAAGGGTAGCCTACATTTTTTTCCCCGGAGAAAGGACAAATCGGGATAAGGAGGCTATTTTTCAGAAGGGACATCGTCAGGACAGTAAAATGTAATTTAGGGGGAAGCAACTTCAGTCCCTACCATTTCTTACTTTGCTCAAACAAAGTCTTTCTGGATAACATCTCAAAGGAATATCACACTCTCAAGTGTTCAAAGAGACTGTTGGGATATTTTTTGATAGCTTTTGAGGCTTCTCAGCCCTAGGATCTGTACTATCGTGCTACATTACACCCGAGGACATGTCTGCTGTGCGGCTGCTGCTCCTGTCTCTGCTTTGTGCCCTCTTTGTGTCCCTGTGCCATGGGGCCTGTGCAGAGGTGGACTCGGACACTGAGGCCGTTGCAGGCAAAGGGTTCAAACTGGGCTGCATCTCCTGTAAGATGAGGCCCGAGGTGGAGGCTTCTGCCACGGTCGACTGGTATTTCAAGGCCAAAGGGGAAGCTGACTTTGCACATATATATAATTACGATGAGGAGGGCCAGCACATTGTGGATGAGCGCTTTGAGGACCGCGTGGACTGGAGCGGCAGTAAGCAGAGCAATGACATACAGGATGCGTCCATCTACCTCTTCAATGTCACCTTCAATGACTCGGGCACCTACCGTTGCTTCTTCCACCGGCTCCTGACGTACGAGTTCTACGAATACCAGACCGTTGTCAGCAAGCTTGTGCACCTGACAGTGGTGGCTAAAGCCACCAGAGGGACTGCCTCCATAGTCTCTGAGGTGATGATGTACGTGTCCATCATCGGGCTACAGGCTTGGCTCTACATAGAGATGGTATACTGCTACAGAAAGATCTCTGCTGCAGGAGAGGAAGCATTACGAGAAAGCGCGAATGCAGAATATTTAGCTATTGCCTCGGAGAGTAAAGATAACTGTGGTGTGCAAGTGGCAGAATAACCCAGGAATTCAAGCAGTGCCATCTACATACTGGCCTCATCACCGATACGACCCCTTGTTTTGCATGACCCGGAAGATGTATAGTATCTTTGAATCTTTATTACCTTTCCTGTTACAATGTTAATGGATAAATGTGATATGATGACATGATTACTTTTAGAGTAGTATGTGTATGAATCCTATTTTTCAGTTGTAATGGTATCTCCCTCTAAAGTGTATGTACATTTATATTAAGAGGTATTGTGAGCATAtggacacaaggcgagacccaaatgcaggcacaggaagcagatggttgagctccaaTATTTATTAATCCAAGGGGTAGGCAAAATGTAGGTcagggacaggcgagagttcacgAACTGGGTCATAGTCCAAAACAGTACCAGGCGAAGGACAGTCTTTGAGGTCAGGTCAGACAGGGGGTTCAGTAACCAGATTGGAGTCCTAACAGTataaggggataggcaggcttaaagacagaacaggcagagtggtcaggcaggcaggttcagagtccaaacaggcaagggtcaaaaccaggaggactagaaccaaaagagactgggaaacaatagGAGCAAgaaaaaccgctggttgacttggcaaacaaggcaaactggcacagagagacaggaaacacagatatatacaccggggataataagcaacacctggaggaggtggagacgatcacaaggacaggtgaaacagatcagggtgtgacagtgagAGAATTAATCTGATTGAAGGGTTATAGCGAGATCACCttggaattagaatactagaatggacatgaacTTTCTTATGATAGAGTaaaaggtcagccattttggtaaAGGAGTTGGTCAACCACAATGGTCAGCGAGTGCTGTGAGAAGATGTTATTTAAAACAATGAATTATATGCACAGTAatgtttattagctagctagtctGCCAGTTTTAGTAGAATGATTCCATCATTTTTTTCTAAATGACTGCCAATATGTCCGACATTCCAAACAAACAATGTAGTCAATACACAGGCTGAAATCAGTTGGTGATATGACTTAGacaaaatgtaaatgcaacaagtaactgatattgtattatattataagATTCACAACTTTCCAAGAAAACAAACATTGAAAACATTTTTGAGGCAATTTATacagaacatttctataaaacCTGTATTtacaggtcaaaagtttggacacctactcattccaggattgtTCTTTAATGTTACTATTTtctaacacatggaataatgtagtaaccaacaaagcgttaaacaaattaaaatatgttttacattttagattattcaaagtagccaccctttgccttgatgacagctttgcacactcttggcattctctc
>TU1765628
AGACGCTGATTAGATTTATCAGATTTAGTTGATTTCGTAAAAATGTGTGGGCCTGTTCGCTGGTTGTGTGAGATAATGCTATATTATTTGAATACGCAATGCCAGCCCTGGCGAAACATCTCTTCAACAAGTAGCCTAGCCTACGGTGTTGCTCCATAAAAGAACAGCGCTGTGTAGATAAATGTGTTGATCCATCAGAAGGGAAGGGTAGCCTACATTTTTTTCCCCGGAGAAAGGACAAATCGGGATAAGGAGGCTATTTTTCAGAAGGGACATCGTCAGGACAGTAAAATTGTCCCTGTGCCATGGGGCCTGTGCAGAGGTGGACTCGGACACTGAGGCCGTTGCAGGCAAAGGGTTCAAACTGGGCTGCATCTCCTGTAAGATGAGGCCCGAGGTGGAGGCTTCTGCCACGGTCGACTGGTATTTCAAGGCCAAAGGGGAAGCTGACTTTGCACATCCACCAGAGGGACTGCCTCCATAGTCTCTGAGGTGATGATGTACGTGTCCATCATCGGGCTACAGGCTTGGCTCTACATAGAGATGGTATACTGCTACAGAAAGATCTCTGCTGCAGGAGAGGAAGCATTACGAGAAAGCGAATGCAGAATATTTAGCTATTGCCTCGGAGAGTAAAGATAACTGTGGTGTGCAAGTGGCAGAATAACCCAGGAATTCAAGCAGTGCCATCTACATACTGGCCTCATCACCGATACGACCCCTTGTTTTGCATGACCCGGAAGATGTATAGTATCTTTGAATCTTTATTACCTTTCCTGTTACAATGTTAATGGATAAATGTGATATGATGACATGATTACTTTTAGAGTAGTATGTGTATGAATCCTATTTTTCAGTTGTAATGGTATCTCCCTCTAAAGTGTATGTACATTTATATTAAGAGGTATTGTGAGCATAtggacacaaggcgagacccaaatgcaggcacaggaagcagatggttgagctccaaTATTTATTAATCCAAGGGGTAGGCAAAATGTAGGTcagggacaggcgagagttcacgAACTGGGTCATAGTCCAAAACAGTACCAGGCGAAGGACAGTCTTTGAGGTCAGGaattagaatactagaatggacatgaacTTTCTTATGATAGAGTaaaaggtcagccattttggtaaAGGAGTTGGTCAACCACAATGGTCAGCGAGTGCTGTGAGAAGATGTTATTTAAAACAATGAATTATATGCACAGTAatgtttattagctagctagtctGCCAGTTTTAGTAGAATGATTCCATCATTTTTTTCTAAATGACTGCCAATATGTCCGACATTCCAAACAAACAATGTAGTCAATACACAGGCTGAAATCAGTTGGTGATATGACTTAGacaaaatgtaaatgcaacaagtaactgatattgtattatattataagATTCACAACTTTCCAAGAAAACAAACATTGAAAACATTTTTGAGGCAATTTATacagaacatttctataaaacCTGTATTtaGGTTGACAATAATTCtattacacaatttctgatatatcacctgccttacttttattttcctgcataagtaaaagcaggaaatgcatcacctatgcctctactgccattcattccaatttTATTTTACTACAATGACTGCCATTATCATCCCATTCTTGAACTTTGAGGGTTTATTACATACCCGCTCAAGAAATGTCACAGGACCTCTGTGTTTATCACACTCTGTATTAATAAATCCATCCACTCCACCTGTTGTATGTCTTCTAGATAATGCACAATCACCA

Function

NR:

description
sodium channel subunit beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952542.1 False 2531 mRNA 0.43 7 34934608 34943891
TU1765628 True 1778 lncRNA 0.41 7 34933039 34943879

Neighbor

gene id symbol gene type direction distance location
zbtb22a LOC106588234 coding downstream 10652 34906715 ~ 34923956 (-)
sall3b LOC106588232 coding downstream 126108 34795394 ~ 34808500 (-)
atp9b atp9b coding downstream 139679 34735374 ~ 34794929 (-)
nfatc1 LOC106588230 coding downstream 229787 34645116 ~ 34704821 (-)
fbxl6 fbxl6 coding downstream 315241 34595231 ~ 34619367 (-)
LOC110496078 LOC106588238 coding upstream 53581 34997472 ~ 34999239 (-)
LOC110496079 LOC106588239 coding upstream 68119 35012010 ~ 35016157 (-)
LOC110496800 LOC106588240 coding upstream 73087 35016978 ~ 35018421 (-)
ago3b i2c3 coding upstream 107504 35051395 ~ 35093817 (-)
LOC110496081 LOC106588241 coding upstream 207460 35151351 ~ 35203984 (-)
G1542885 NA non-coding downstream 3368 34931007 ~ 34931240 (-)
G1542883 NA non-coding downstream 4683 34929647 ~ 34929925 (-)
G1542882 NA non-coding downstream 5229 34929163 ~ 34929379 (-)
G1542881 NA non-coding downstream 8662 34925723 ~ 34925946 (-)
G1542891 NA non-coding upstream 1320 34945211 ~ 34945415 (-)
G1542892 NA non-coding upstream 1747 34945638 ~ 34946099 (-)
G1542893 NA non-coding upstream 2557 34946448 ~ 34946678 (-)
G1542899 NA non-coding upstream 9771 34953662 ~ 34953872 (-)
G1542902 NA non-coding upstream 11163 34955054 ~ 34955261 (-)
G1541318 NA other downstream 772150 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1260377 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 1323715 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 1542856 33391339 ~ 33391752 (-)
G1542988 sast other upstream 193746 35137637 ~ 35138554 (-)
LOC110496085 NA other upstream 403004 35346895 ~ 35351655 (-)
G1543128 LOC106588245 other upstream 508727 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 551431 35492995 ~ 35499681 (-)

Expression


Co-expression Network