LOC110496078 (LOC106588238)


Basic Information

Item Value
gene id LOC110496078
gene name LOC106588238
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34997472 ~ 34999239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571759.2
tgcttagctccattccatttatttttcatcctgaaaaactcctgtccataatgattacaagcatacccataacatgatgcagtcaccactcTGCTTGAAAATTTGTAGAGTGGTACTAAGTAATGTGTTCTATTGGATTTGTcccaacataacactttgtattcaggacaaaagtgactttgcaaacaggatgcatgatttggaatatttgtatccTCTATAGGCTtccttctcttcactctgtcaattaggttagtattgtggagtaagtgTGGGGTACAAAGACGAGGTAGACATTAAAAACCATGTTaagcactattattgcacacagagtgagtccatgcaacttattatgtaactTGATAAGCAATTTTTCACCCTTTTCTCTTTCCAGTTGTGTCGTGAGTCTCCAAGTGTCTGAGACTGATGAAGTAGGCTAATCGCCATGCCGATCACTCATCTGTTGCTGTCTGTTTACATTGCCACCTTCCTGATTGGGGTACCTGCCAACATCCTGGCATTCTGCACCTTTTGCCAAAAGGTGCGCCGCAAACCTGCCCCCATTGACATCCTGCTCCTCAACCTGACCATCTCCGACCTCATCTTCCTCACTTTCCTGCCCTTCAAGATGAAGGAGGCTGTTGATGACATGCACTGGAACCTCCCCTTCTTCTTGTGTCCAGTCACTGGTTTCCTGTTCTACTCCACCATCTACAACAGCACCCTCCTCCTGACCGCGGTGAGTGTGGAGCGCTACCTTGGTGTGGCCTTCCCTATCAGATATGCCCTGTGTCACAGGCCACGCTATGCTGTGGTGGCCAGTATCATATGTTGGGTGGTGTCATCACTGAACCTTAGCGTTGTGTACATTGTGCCCTGCTCCCACTGGATATATAGCAATGGGACCATTATGGACGATCCCCCGACAACGTGCTACCTGAACTTCACCCAAGGCCAGCTCAGCATCCTTCTCCCAGTGCGTCTGGAGCTATTCCTGGTCCTCTTCTGCGTCCCCTTCCTGGTCTGCACCTTCTGCTATGTCAACTTCATCCGTATCCTGTCTCGGCTGCCCAACATCGGGCGGCGGCGGCGCCTGCGGGCCATTGGGCTGGCACTGGGCACCCTTTTGGTGTTTGCCCTCTGCTTTGGGCCCTACAACGTATCCCACGTGGTGGGGTTCGTCCGGAAAGACAGCGAGAGTTGGAGGGATGTAGCGTTGCTCTCCAGTACCCTCAATGCCTGCCTAGACCCCATCATCTTCTATTTCTCCTCAGTGGCTGTCAGGAGCATGCTCAGTCACTGCTTCAGGAGCTTCGTGGCTACACTACACATTTTAAAGTGTGAGAGGGGTCAAGTCTGATAGGGGTCAGCCTCCAAGACTGATAAATACAGAAAAACATGCCCCCCTCCAATTAGTCATGCATGAAGATGTATGTATGTTCAGTGCAATTATGTATATTATATGTATTAGGTATACTCTGTTATGTTATGTAACTGTTGGCAAAGATCATCTATGATAAATTACGTTCCCTAAAGCTGTACCACAATTATAGTATAACCATTACCCACACCTCCACAAACCATatttatatttaatttaaaaagtCATGAATAAATTGATCATCCGTATTACTTAAATCGTTTATATTACAGTACATGTGCTCTAACCAGTAGGTTACATCCAATAAAAAATATACTTGTTTTATTGGAATAAATAAATTAGAACCATAAGCTATAAGAGCACAGAGGTGGGTGTGAAAGATGTCCA

Function

NR:

description
free fatty acid receptor 3-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04326 FFAR3, GPR41; free fatty acid receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571759.2 True 1768 mRNA 0.45 1 34997472 34999239

Neighbor

gene id symbol gene type direction distance location
LOC110496076 LOC106588236 coding downstream 53581 34933039 ~ 34943891 (-)
zbtb22a LOC106588234 coding downstream 73516 34906715 ~ 34923956 (-)
sall3b LOC106588232 coding downstream 188972 34795394 ~ 34808500 (-)
atp9b atp9b coding downstream 202543 34735374 ~ 34794929 (-)
nfatc1 LOC106588230 coding downstream 292651 34645116 ~ 34704821 (-)
LOC110496079 LOC106588239 coding upstream 12771 35012010 ~ 35016157 (-)
LOC110496800 LOC106588240 coding upstream 17739 35016978 ~ 35018421 (-)
ago3b i2c3 coding upstream 52156 35051395 ~ 35093817 (-)
LOC110496081 LOC106588241 coding upstream 152112 35151351 ~ 35203984 (-)
LOC110496085 NA coding upstream 348705 35346895 ~ 35351655 (-)
G1542914 NA non-coding downstream 22717 34974476 ~ 34974755 (-)
G1542912 NA non-coding downstream 24377 34972215 ~ 34973095 (-)
G1542847 NA non-coding downstream 27954 34968643 ~ 34969518 (-)
G1542851 NA non-coding downstream 28924 34967990 ~ 34968548 (-)
G1542848 NA non-coding downstream 29595 34964360 ~ 34967877 (-)
G1542859 NA non-coding upstream 39969 35039208 ~ 35050281 (-)
G1542979 NA non-coding upstream 120738 35119977 ~ 35120250 (-)
G1542990 NA non-coding upstream 144585 35143824 ~ 35144167 (-)
G1542993 NA non-coding upstream 148402 35147641 ~ 35149555 (-)
G1542996 NA non-coding upstream 155073 35154312 ~ 35154536 (-)
G1541318 NA other downstream 835014 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1323241 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 1386579 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 1605720 33391339 ~ 33391752 (-)
G1542988 sast other upstream 138398 35137637 ~ 35138554 (-)
G1543128 LOC106588245 other upstream 453379 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 496083 35492995 ~ 35499681 (-)

Expression


Co-expression Network