LOC110496081 (LOC106588241)


Basic Information

Item Value
gene id LOC110496081
gene name LOC106588241
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35151351 ~ 35203984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951039.1
AAAAGGTGTACTCTAGCCTGAGcgaggacagagaggagcaaAAATACTTAGGGCCAGCACTGAAAATCCAGAGAcggtgagagaggacagagagggagggaatgagagacagACACCAAGATTGATCAAAGAGCAAAAGATTTGAAAAGCATCCAGCTCCAAGATGCCAGCTCTATGGCACTCCACGTTCTTCCTGGTGATTGTGCTGCTTGCCATCAGTAGGCCCAGCCTGGCATCTCAGGCAGGTAATGATGACCTTCAGATGGGCACAGAGCACAGGACTGACAAGGGCACAGAAAATGAAACAACGAACCTTATCACCACCCTGCCCATCGTCACCTGGAACTGGCATGAAATTCAATTCCCGTACCTGATAGTAGTCTGGATCCTGGTCAGCTGGCTCTGCAAACTCGTGTTCCAGCTGATCCCCAGCCTGACCAGTGTGATCCCGGAGAGCGGCCTCCTCATTTGCATCGGTTGGGGCCTGGGCGGCATCATCTACGGGGCAGACAAGGTGCAGTCCTTCAGGCTGCAGcccttcatcttcttcttctacctgcTGCCCCAGATCGTCCTGGACTCGGGCTACTCCATGCCCAACAAGCTGTTTTTCAGCAACTTGGGCTCCATCCTGGTTTACGCAGTTATTGGCACCTGCTGGAACGCTGCCACTTTGGGACTTGCCCTTTGGGGTTGCTGGTTGGGCGGGGCCATGGGTGATATCGACACTGGTCTTCTGCAGTTGCTGTTGTTTGGGAGTCTGATTGCTGCTGTGGACCCCGTGGCTGTGATTGCTGTGTTTGAGGAGGTCCATGTCAACGAGGTCCTGTACATCCTGGTGTTTGGGGAGTCCCTTCTCAACGACGGCGTCACAGTGGTGCTGTTCAATGTGTTTAATGCATTTGTGTCGCTTGGAGGGGCAAAAATCGACGCTGTAGAGATCATCAAAGGCATAATCTCGTTCTTCGTGGTGGCGGTTGGAGGCTCCCTGGTTGGTGTCGTCTTTGCTCTGCTGATCTCGCTCCTAACCAGATGCACCAAGAACATCCAGATCATCGAGCCAGGCTTCATCTTCATCCTGGGCTACCTCTCTTACCTCACAGCCGAGATGCTCTCGCTATCTCCTATCCTGTCGTGTACGTTCTATGGCGTCTGCTGTCAGAAGTATATCAATGCCAACATGGATGAGAGGTCAGTCAGCACGGTACGATACGCAATGAAGGTGTTCGCAAATGGCTCAGAGACCATCATCTTCGTCTTCCTCGGCATCACGGCCATAGATCCGTCTATATGGGTGTGGAACACAGCCTTTATCTTCCTCACACTCCTCTTCATCTTTGTGTTCAGGTTAATAGGGGTCTTTTTTCTCACCTGGATTCTCAACCAATACCGACTGGTTCCCTTGGAGTTTATTGATCAGGTAGTGATGGGCTATGGTGGCCTACGAGGGGCAGTAGCCTATGGCCTGGTGGTCTCGCTGGATGAGAAAAAGTACAAGGAGAAGAACATGATGATCAGCACCACCCTCCTAGTGGTGTACTTCACTGTCATGCTGCAGGGAATAACCATGAAACCACTGGTCAACTGGCTAAAAGTGAAGAGAGCTGCAGTGACAGAACGCACACTAGCTGAAAAAATACAGAATAGGACCTTTGACCACATTCTTGTCGCCATAGAGGATATTTCTGGACAAATAGGACATAATTACATGAGggacaaGTGGAATAACTTTGAGGAGAGGTGGTTGTACTGGCTCTTGATGACGCCCTCTGCCAAGAAGTCTTGTGACCACATATTCAACATCTTCCACAGACTCAACCTCAAGGATGCCATGAGCTATGTGAAAGAGGGTGAACGCAGAGGCTCATTGGCGTTCATTCGGAAAGAAACCAAGATTGATGTGGATTTCTATAAGAAGTTTGGTGCCAACTTCTCAGAGATGATGCCTTACATCATGACAGAAAATATGGGATCGGATCATGTTCCAGTCTCCTCCATCTTATGGAACAGTGTGCCCTCTGTCTGCCTGGACATGCATGAGCAGGACCTGACGATGAGGGAGTCAGAGGACTTTAATGCACACCATCTACTGCAGCAGCACTTGTACAGAGGCAAGAAACAGCACAGACACAGGTGCAGTCGGAAGCACCTCGAAGTCAACAAGGACAAGAATGAGGTGCAAGAGATCTTCCAGAGAACCATGAGGAGCCGTCTAGAGTCCTTCAAGTCAGCCAAAACAGGTGTCACTCCACCCAAGAAGATAACCAATCATCTAAAGAAAGACCAGCCACAAAAGATGCCACATGGAAAATCCACGGATAACAGTAAAAGCCATGCTTATGGGGATGAAGATTTTGAGTTTTCTGAGGGAGACAGTACCTCTAGTTGCAAGGCTGCTGACGGTTCATTCCCCATGAGAGCCTGTAGAGGTGCTGGAATCCTGAACCCAGCCTTCAATGCAGAGATGGACCCCATGCCACCAATGCAGCAGATTCCGCCATTGGCTGAAACCAATGGCAGATTGGCTGAAACCGAGGTGGACAGCAGCGCCGTGGTCCCTTCTCAGAGGGCTCAGCTGAGACTGCCCTGGACACCTAGAGTTAGAAGTTCATCTAGGGGTCATGATTGA
>TU1765778
CAGTAAGGGGCTTATCCCACAAGTGCTTAGCTTACCATAGGCAAGCTGCAACTGCAGGTAGCAGTTGCTTTACTGGGTCTGCACTAGTGGAAAGTCTCCTCCCATCGTAAAGATTCCATTCTCGGTTTCTGTTCCCCAGGGGATCCGGCTACTCGATCTGTTCGCGGCTCGCCTACAGACATCAAAGAACCCAAACTCCAGTGGAGGAATGGCGTCTTCTCTGTCTTCGAGGCTGTCCCATCTAAAGGACTGAGAGGGTGGGACCTGGTCGACCTCCATGTCAGGGGTCTTTTTTCTCACCTGGATTCTCAACCAATACCGACTGGTTCCCTTGGAGTTTATTGATCAGGTAGTGATGGGCTATGGTGGCCTACGAGGGGCAGTAGCCTATGGCCTGGTGGTCTCGCTGGATGAGAAAAAGTACAAGGAGAAGAACATGATGATCAGCACCACCCTCCTAGTGGTGTACTTCACTGTCATGCTGCAGGGAATAACCATGAAACCACTGGTCAACTGGCTAAAAGTGAAGAGAGCTGCAGTGACAGAACGCACACTAGCTGAAAAAATACAGAATAGGGTAACTATTTAGTCGGAAGTCTTTGTTGTTCATCAACCCAAAAGAATCAGACAACAAACCTTACATCTCTCTAATAAATACCCAAAGTAAAGTGTTTACTTTTTGTAAACTGTACTACACCACCTTTTTATACACAAGGGGATGTCCTCGGGACAAGTCAATCACAGGTCTGTCAAATGAACGACAAGGTATATTAAGAGGAGAACACACAAATAAATTAGTAGCAGAGCAAGATTCATGCAGACTATTAAAGCACATTCGTGATGAAAAACTCTTTGTGAGAGAGAGCACACATGGTATAATATTCTTCTAGTATAATAACACACTGGTGGTAATTGGCATGTGAATGCACACTGCTTCTGAATTAAATAGCTCCCTCTTAAGAACAGCCAGCCCAGAAGGTCTCTAGGGAAGTGGTGACACAACATACAAACAAACATTTATATGACAAAGAAAATTGTACTAATCTGCCCACTAAGGCAACCCCAAATCATTTGCATGGATACCAGATCATTTGCCAGGGCAGACTACACAGAAAAACCTCAAATCTACCGGGACACAAACTAACTCAACAGTAAGAATAGCACGCGCTCCAAAAACtctgaaaaataaaaacataattatAACCCTGGCTCATTTACACAATAGCAGTAtcaaacattttatattttagtagccctttcctgcagtcaaatgacctagtcgcctcatgggtggaatgtgatttaatatttttcataatttcattaaTAAACATTTTTGTAATATTGCAGTCTTTTGTGATGTATATTATCAAGTTTAATATTGGGATGTAAACTCAAAATTGAAAACATTTAaactttttttaagcccataaccatgtgtatgaAGTGTATACTTTGGTTTCAAAGTAATTTGTTTTAGAAACactctgtgaccctgatttagcccactgcagtaaaaggtgaaataaacaacatCATTAAATAGACTTGATTCACATTAATGTTAAAAGTGAATACCATTCAAATGAATGAGCTATACCTGTCTCCCAGCTCATACACTCACTACCGTCTTCCAAGCCACTTCTCCAAATTAGGAAAAATTAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951039.1 False 2629 mRNA 0.50 16 35151351 35203984
TU1765778 True 1665 TUCP 0.41 3 35175306 35180028

Neighbor

gene id symbol gene type direction distance location
ago3b i2c3 coding downstream 57534 35051395 ~ 35093817 (-)
LOC110496800 LOC106588240 coding downstream 132930 35016978 ~ 35018421 (-)
LOC110496079 LOC106588239 coding downstream 135194 35012010 ~ 35016157 (-)
LOC110496078 LOC106588238 coding downstream 152112 34997472 ~ 34999239 (-)
LOC110496076 LOC106588236 coding downstream 207460 34933039 ~ 34943891 (-)
LOC110496085 NA coding upstream 143960 35346895 ~ 35351655 (-)
si:ch73-347e22.4 LOC106588244 coding upstream 173815 35377799 ~ 35392845 (-)
LOC110496091 LOC106588245 coding upstream 196742 35400726 ~ 35407830 (-)
LOC118941136 NA coding upstream 203995 35407979 ~ 35415035 (-)
LOC118941138 NA coding upstream 211204 35415188 ~ 35419901 (-)
G1542993 NA non-coding downstream 1796 35147641 ~ 35149555 (-)
G1542990 NA non-coding downstream 7184 35143824 ~ 35144167 (-)
G1542979 NA non-coding downstream 31101 35119977 ~ 35120250 (-)
G1542859 NA non-coding downstream 101070 35039208 ~ 35050281 (-)
G1542914 NA non-coding downstream 176596 34974476 ~ 34974755 (-)
G1543076 NA non-coding upstream 67335 35271319 ~ 35271564 (-)
G1543064 NA non-coding upstream 75683 35279667 ~ 35280647 (-)
G1543063 NA non-coding upstream 78539 35282523 ~ 35283024 (-)
G1543081 NA non-coding upstream 102699 35306683 ~ 35306886 (-)
G1543089 NA non-coding upstream 112324 35316308 ~ 35316512 (-)
G1542988 sast other downstream 12797 35137637 ~ 35138554 (-)
atp9b atp9b other downstream 411712 34735374 ~ 34794929 (-)
G1541318 NA other downstream 988893 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1477120 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 1540458 33602474 ~ 33610948 (-)
G1543128 LOC106588245 other upstream 248634 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 291338 35492995 ~ 35499681 (-)
G1543346 LOC106588513 other upstream 807003 36010987 ~ 36012686 (-)
G1544806 NA other upstream 2097524 37301508 ~ 37302174 (-)
G1543001 NA non-coding downstream 1723 35173288 ~ 35173583 (-)
G1543000 NA non-coding downstream 9526 35165543 ~ 35165780 (-)
G1542999 NA non-coding downstream 10155 35164923 ~ 35165151 (-)
G1542996 NA non-coding downstream 20770 35154312 ~ 35154536 (-)
G1543013 NA non-coding upstream 11965 35191993 ~ 35192196 (-)

Expression


Co-expression Network