LOC110496082 (LOC106588242)


Basic Information

Item Value
gene id LOC110496082
gene name LOC106588242
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35237754 ~ 35324664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952544.1
TCGTGGCGAGTAGTGCGGACAAAATTGAGAAAAAAATCAGGGAAGCAACAGCTGTGTTGGAATGCTAACAAGATGGGTGTCAGATCTGATGACATGGAGTGGGAGGATGAGGGTCAAGGAATGAATGAAGAAGCAATGTGAAGGTTAAGTGCTGTAATTGGTGGTGTTGGGGATTTATTTGGTTTAGAATTTTATTTTCATGGTAGGTAGTACATAGTTGGTCTGATCATGATTGATCGAcattccagcacagtaggtggcggcatgcacttTAAACGTTGGTTTGTGGACCGCCATgataccacagaagaagaaggcGGTGATGAAGAGAGGAGACCATGTTGAATTAGCGTTTTATATGGAGTGAATTTAATCTAACAGTGACATAAGTAATTGATCTGCCGCAAACATTTATGATATATAACATCAAAGTGAGAGAAAGGTGGAACAGGTTTGAGTTGCTGAATAcaccaccactcacacacacagctacacacgtTGACAGAAAagctgagagaggagggagactcacCTGGAACAGAGGGGACAGACCGAAAGGAGCCCAAGGGGAACTTAAAGCTGCGTTGCTTTTGGACTACAGTTACCCTTGTTTGATTTTCAACATCAGGAAACTACTTTAACACGTGGATGGACATATACAGACAGAGTGGAAAACAAATGTTGAACAATAAGAACATTATTATTTTGATGAAATATTTGTACAAAGGACATCGATGTTGAGCAATTCAAATGGACTTGATGCAAAACAAGGAAATAAAAATATGTAAATGTACGTTTGAACAAAGATTTATATTACAGATGCTATTCCCCCGCTTCAAATAGCAGTTCTATTGCAGGAATTAAACTTTGATTATTGTTCACatataatgttctatattgtgTGCAGGTGCCGTATATTTATGCATTTGAATGCATATATCTCTTCATTTGGGAGAGCTCTTGTATAAATGCTATTTTTTTTCATACGGCAGTAAACTCTGTTGAAGGGGACCGAACTGCACgtacatatatatgtaaaaacgACAGACTTCTGTTGTAAAAGCTTTGGACAAAAAAACAAGATAATATTTGTTAATGCTTTATTAGACTCATCTACTTTTGAAGAGGCTTTTTAAGGgggcaaaaaaacagaaaatattaatattttgAGAATAAAAACAGGAAAGCGGAAATGGCAGCTGCCAGAACAGAGAACCTTGGTCCTGTCGTCCTGGGACTGAACAAGCAGAACGGGCAGCTTAGGGGGCTTCCTAAACCGGCTTCTCCCCAATCAGGACCCCTCGTCCTGGGCTCTCTGTCAGACGAGGCCACAGGTGCATCCCAGAAAGCGGGTGCTGCCCAGGAGGGAACTGGGATTAGGTTTGGAGATGACTGGAAAAAGAGCCTACAGCTCCCTCCCAAAGACACCAGGGTCAGAACCTCTGATGTAACGTCCACTAAGGGAAATGAGTTTGAGGACTACTGTCTGAAACGGGAGCTCCTGATGGGCATCTTTGAGATGGGCTGGGAGAAGCCCTCCCCTATCCAGGAGGAGAGCATTCCCATAGCCCTGTCAGGACGAGACATCCTGGCCCGAGCCAAGAATGGAACAGGGAAGAGTGgggcctacctcatccccatgctggAGAGAATAGACCTGAAGaaggactatatacaggcCATTGTGATGGTGCCCACTCGTGAGCTGGCCCTGCAGGTTAGCCAGATCAGTATCCAGATCAGTAAGCACCTGGGCGGCGTGAAGGTCATGGCCACCACGGGCGGCACCAACCTGCGAGATGACATCATGCGCCTGGACGAGACTGTGCATGTGGTCATAGCCACACCCGGCAGGATCCTAGACTTGATTAAGAAGGGCGTTGCCAAAGTGGATAGAGTCCAAATGATGGTGATGGATGAGGCAGACAAGCTGTTGTCTCAGGACTTTGTAGTGCTCATCGAGGATATCATCAGCTTCCTGGCCAAGGGTCGTCAGATCCTACTCTACTCTGCCACCTTCCCCATCAGCGTGCAGAAGTTCATGGCCAAGCACCTGCAGAAGCCCTATGAGATCAACCTGATGGAGGAACTGACTCTGAAGGGCATCACCCAGTACTATGCCTACGTCACTGAGAGACAAAAAGTCCACTGTCTCAACACGCTCTTCTCACGGCTGCAGATCAATCAGTCCATTATCTTCTGTAACTCCACCCAGAGAGTTGAGCTGCTGGCCAAGAAGATCACCCAGCTGGGCTACTCCTGCTTCTACATCCACGCCAAGATGATGCAGGAGTACAGAAATCGTGTGTTCCACGACTTCAGAAATGGACTCTGCAGAAATCTTGTCTGCACCGATCTGTTCACCAGAGGTATTGACATCCAAGCCGTCAATGTCGTCATCAACTTCGACTTCCCCAAGAACGCCGAGACATACCTGCATCGCATTGGAAGATCAGGGAGGTTTGGTCACCTGGGCCTGGCCATCAACCTGATCACCTCTGAGGACCGCTTCAACCTGAAGTCCATCGAGGACCAGCTGGTCACCGACATCAAGCCCATCCCTGGCAGCATCGACAAGAACCTGTACGTGGCCGAGTTCCACACCGCCAACCTAGACTGCGAGGTGGAGGAGGAGCTGAAGGAGACAGGCTGCCAACAGGAGGAGCCCTAGAACCCCTCAACTGGACAATAGGACATACCCAGCTTTTGCACAACATTCAGCTCTTGCACACAAGCTTCAGGCACCTCTTCAACTTCTCTTTTCGCAACCTTCAAAACCTGGCACATGGACGTTAAGGTCGAGTTGACTTTTTGCTGATTTGTATATTCTGTTCTTATTCCCCCTTGTTATTTCATTAAGAGCTGcctgcattttttttatttaaaatggtTTAACCATGTTGTTTTGCACCAAAGGTAGCTTGCCCAATGCACACTGAATGAGATCAATCAATCCTTTTTTGGCTTAAGACATGTAGGCTAATGTTTTTTGGATTGTATCCTGGTATTGCAAGGTAACATATCAGCTGAAAAACTTCAGAGATAGGTGAGGAACGTTGTCTTAAAAAAAGTAAGAACCATGCAAAATATTGATCAAGTTGTACTGTTTCCAGCTGAATATGTCGTCCACTTTTATGGTCAGCTTTGGAGGAGGACAGGTTTGTGTCATCAATGACACGAGGCCTATTGTTAACCGTAGCAACGACCACTAAGGGTAAAGAAAGCTTCAGAGTGTTGGAAAGCTCATTTCACTTACATGCATTTTTTATTGGAATTAAGATACTATATTTGTAGGTTTTAAACTTATTAA
>TU1764603
agagacagcagaagaagaaggcGGTGATGAAGAGAGGAGACCATGTTGAATTAGCGTTTTATATGGAGTGAATTTAATCTAACAGTGACATAAGTAATTGATCTGCCGCAAACATTTATGATATATAACATCAAAGTGAGAGAAAGGTGGAACAGGTTTGAGTTGCTGAATAcaccaccactcacacacacagctacacacgtTGACAGAAAagctgagagaggagggagactcacCTGGAACAGAGGGGACAGACCGAAAGGAGCCCAAGGGGAACTTAAAGCTGCGTTGCTTTTGGACTACAGTTACCCTTGTTTGATTTTCAACATCAGGAAACTACTTTAACACGTGGATGGACATATACAGACAGAGTGGAAAACAAATGTTGAACAATAAGAACATTATTATTTTGATGAAATATTTGTACAAAGGACATCGATGTTGAGCAATTCAAATGGACTTG
>TU1764602
TAAGTGCTGTAATTGGTGGTGTTGGGGATTTATTTGGTTTAGAATTTTATTTTCATGGTAGGTAGTACATAGTTGGTCTGATCATGATTGATCGAcattccagcacagtaggtggcggcatgcacttTAAACGTTGGTTTGTGGACCGCCATgataccacagaagaagaaggcGGTGATGAAGAGAGGAGACCATGTTGAATTAGCGTTTTATATGGAGTGAATTTAATCTAACAGTGACATAAGTAATTGATCTGCCGCAAACATTTATGATATATAACATCAAAGTGAGAGAAAGGTGGAACAGGTTTGAGTTGCTGAATAcaccaccactcacacacacagctacacacgtTGACAGAAAagctgagagaggagggagactcacCTGGAACAGAGGGGACAGACCGAAAGGAGCCCAAGGGGAACTTAAAGCTGCGTTGCTTTTGGACTACAGTTACCCTTGTTTGATTTTCAACATCAGGAAACTACTTTAACACGTGGATGGACATATACAGACAGAGTGGAAAACAAATGTTGAACAATAAGAACATTATTATTTTGATGAAATATTTGTACAAAGGACATCGATGTTGAGCAATTCAAATGGACTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952544.1 False 3310 mRNA 0.45 14 35244197 35324664
TU1764603 False 463 lncRNA 0.40 3 35237754 35245926
TU1764602 True 614 lncRNA 0.40 2 35244342 35245926

Neighbor

gene id symbol gene type direction distance location
olah sast coding upstream 104363 35131761 ~ 35139834 (+)
LOC110496075 LOC106588237 coding upstream 258009 34959423 ~ 34986188 (+)
LOC110496074 NA coding upstream 322446 34918537 ~ 34921751 (+)
mbpa LOC106588233 coding upstream 345784 34883492 ~ 34898413 (+)
LOC110496067 LOC106588229 coding upstream 604240 34633226 ~ 34640621 (+)
tomm40l LOC106588243 coding downstream 10384 35335048 ~ 35348295 (+)
LOC118941149 NA coding downstream 88107 35412771 ~ 35433941 (+)
LOC118941148 NA coding downstream 116479 35441143 ~ 35504636 (+)
LOC110496101 LOC106588519 coding downstream 564902 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 646393 35971057 ~ 35974902 (+)
G1541956 NA non-coding upstream 57446 35186519 ~ 35186751 (+)
G1541952 NA non-coding upstream 60863 35183025 ~ 35183334 (+)
G1541947 NA non-coding upstream 69403 35174560 ~ 35174794 (+)
G1541946 NA non-coding upstream 71190 35172761 ~ 35173007 (+)
G1541944 NA non-coding upstream 77745 35166232 ~ 35166452 (+)
G1541982 NA non-coding downstream 1026 35325690 ~ 35327753 (+)
G1542032 NA non-coding downstream 40174 35364838 ~ 35367546 (+)
G1542036 NA non-coding downstream 48174 35372838 ~ 35373207 (+)
G1542037 LOC106588244 non-coding downstream 49207 35373871 ~ 35386463 (+)
G1542038 NA non-coding downstream 62307 35386971 ~ 35387648 (+)
LOC110496058 LOC106588349 other upstream 1114538 34127192 ~ 34133734 (+)
G1540996 NA other upstream 1165123 34078718 ~ 34079074 (+)
LOC110496043 LOC106588212 other upstream 1706633 33535229 ~ 33537569 (+)
G1540551 NA other upstream 1753076 33489337 ~ 33491121 (+)
G1542052 LOC106588245 other downstream 77173 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 154171 35478835 ~ 35502933 (+)
G1542090 NA other downstream 204879 35529543 ~ 35606179 (+)
G1542253 NA other downstream 511172 35835836 ~ 35836617 (+)
G1541987 NA non-coding downstream 33283 35279209 ~ 35280296 (+)
G1542015 NA non-coding downstream 63717 35309643 ~ 35309861 (+)
G1542017 NA non-coding downstream 70706 35316632 ~ 35316832 (+)
G1541989 NA other downstream 36677 35282603 ~ 35283706 (+)

Expression


Co-expression Network