tomm40l (LOC106588243)


Basic Information

Item Value
gene id tomm40l
gene name LOC106588243
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35335048 ~ 35348295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952546.1
GTTCACCAATCAGCAGCCTCCAAACAGTGATGACCCCACCTTCAGCCCTTGAGAACCTTGCTGTCTTTTCCAAATCAGAAAAAGAGTCCATTTTGCAATCTATCAGCAAGTGTTGGTTGGAATGGGCAGTGTTTTGGCAGCCAGCTCCCCCAACCCGCCATTGGCTCCTGCTGGTGGTAGTCCTGGCGGCCCAGGGATGACGGTACCCCCAGGCTTCTCAATGCCCCCAGTATCACCTGTACTGCCTTCAGGCAATGCGGCACCCGGTCAGCAGGTGGAGGCAGAAGGCCCTCTGTCCAACCCTGGCACGTTTGAGGAGTGCCACCGCAAGTGCAAAGAGGTGTTCCCCATGCAGATGGAGGGTGTAAGACTAATCGTTAACAAGGGCCTGAGTAATCACTTCCAGGTGAATCACACAGTAATGCTCAGCACCCTAGGCGATTCCAGTTACAGGTTCGGTGCCACCTATGTGGGAACTAAGCAGATGGGTCCAGCAGAGTCCTTCCCAGTCATGGTGGGAGACATGGACAACAGCGGCAGCCTCAATGCCCAGGTCATTCATCAGATCTCCAACAGAGTCCGGTCCAAACTAGCCTTCCAGACGCAGCAGCAAAAGTTTGTGAACTGGCAAGGAGATTGTGAGGTCCGAGGAGAGGactttactgctgctgttacccTGGGCAACCCGGATGTCCTTGTAGGCTCTGGTATTATTGTAGCACACTACATCCAGTCCATAACCCCATCCCTGGCtttgggaggggagctggtttaCCATCGCAGGCCAGGAGAGGAAGGCACGGTCATGTCTCTAGCTGGCAGATACACAGGCAGTAACTTCATTGCCACATTGACATTAGGGGGAGCAGGGGCACATGCCTCCTACTACCACAAAGCCAACGACACGTTGCAGTTGGGTGTTGAGTTTGAGGCTAGCACCCGAATGCAGGAGACCAGTGTATCATTTGGCTACCAGCTAGATGTGCCTAAAGCCAATTTGCTCTTCAAAGGCTCCATAGATAGTAATTGGGTGGTGGGGGCCACACTAGAGAAGAAGCTACTTCCTCTGCCTCTTTCTTTGGTCCTGGGGTCCTTCCTCAACCACAAGAAGAACAAGTTCCAATGTGGTTTTGGCATCACCATCGGTTAGACTTACCAGAGTGGAGGAAAGCCTATAGGCAATCTTCACAGAAAGGACAGACCAAGCCTGGACTCAACACTGAGTCTCACATCACTTCAATTTGTCCCCATCTGACTACTAAGAAGTTCATTGTTGTTGGTTCCAAAGGTTAATTTTTCCTAAATAATGTGTtaaaatatacactatatatacagaagtatgtggacaccccttgaaattagtggattcggttatttcagccatacccgttgctgacaggtgtataaaatcgagcacacagccatgcaatctccatagacaaacattggcagtagaatggccttactgaagagcccaGTAACTTTTTCAATGTGGCACTGCCATAAGATACTACATTTACAACAAGGTCAGTTTGTCAcctttctgtcctgctagagctgttattgtaaagtggaaacgtctaggagcaacaatggctcagccatgaagtggtaaaccacacaagctcacagaactgccgagtgctgaagcgcgtataaattgtctgtcctcgtttgcaacacactctaagcaaagtcagcacaataactgtttgtcgggagcttcatgaatcccattgaacacctttgggatgaattggaacgccgactgcgagccaggcctaattgcccaacctcacctaatgctattgtggctgaatgctgtggggacttgcttccaatcaacatctagtggaaagccttcccagaactgtggaggctgttatagcgccaaggggggaccaactccatatcaatgcccatgattttggaatgagatgttcaacgagcaggtgtccacatacttttgaccatgtagtgtatataatcATTGAAAGGTTAAACAAAGATATGTAAATAAGGTGCATCTTTAGGACTAAAATAATCAATCGAATTATCAAAATTGGGGTTAAAATGAATGGGTCAGAGATTGAGGACAATGTGTTGATGAGATTGGACAATGGCCATATACTTCAGAGACTAACATATTGAGACCAACATAGCAGACAGCAGTAAAAGAGGACTCAGTAAAACACTTGCTGTTAGGAAACTATCAAATTATAGTACTTTTGTTTTTAGGTCTGTGCCGGTACAGTTTTGTTTTGGTcggtttgtttttatttattttgtgttgTATGGTCTATCTGCTTCTTTTCACTTGTTTGTTTTTTAGGTTGGGGAGGCAGAGGGCAGGAAAATCTTTTTCATAATCGTATAGATTACCTGTATATATCTATTGGGAAAAGGATAAATGCCATTTCTTACAAAATA
>XM_021571765.2
TGCCACACGTTGTTCAGAAGTGGGCTCATTTGCCCAATCCAAGTGCCACCTCAAGTAAGTAGGCGGGTCTTAGCTATGACGCATGGCAGTTTGAGGTATTCTTACGTTACTGCCGGGTGTTGCATCGTCTTCTGGAAATCACAACAATGGGCAGTGTTTTGGCAGCCAGCTCCCCCAACCCGCCATTGGCTCCTGCTGGTGGTAGTCCTGGCGGCCCAGGGATGACGGTACCCCCAGGCTTCTCAATGCCCCCAGTATCACCTGTACTGCCTTCAGGCAATGCGGCACCCGGTCAGCAGGTGGAGGCAGAAGGCCCTCTGTCCAACCCTGGCACGTTTGAGGAGTGCCACCGCAAGTGCAAAGAGGTGTTCCCCATGCAGATGGAGGGTGTAAGACTAATCGTTAACAAGGGCCTGAGTAATCACTTCCAGGTGAATCACACAGTAATGCTCAGCACCCTAGGCGATTCCAGTTACAGGTTCGGTGCCACCTATGTGGGAACTAAGCAGATGGGTCCAGCAGAGTCCTTCCCAGTCATGGTGGGAGACATGGACAACAGCGGCAGCCTCAATGCCCAGGTCATTCATCAGATCTCCAACAGAGTCCGGTCCAAACTAGCCTTCCAGACGCAGCAGCAAAAGTTTGTGAACTGGCAAGGAGATTGTGAGGTCCGAGGAGAGGactttactgctgctgttacccTGGGCAACCCGGATGTCCTTGTAGGCTCTGGTATTATTGTAGCACACTACATCCAGTCCATAACCCCATCCCTGGCtttgggaggggagctggtttaCCATCGCAGGCCAGGAGAGGAAGGCACGGTCATGTCTCTAGCTGGCAGATACACAGGCAGTAACTTCATTGCCACATTGACATTAGGGGGAGCAGGGGCACATGCCTCCTACTACCACAAAGCCAACGACACGTTGCAGTTGGGTGTTGAGTTTGAGGCTAGCACCCGAATGCAGGAGACCAGTGTATCATTTGGCTACCAGCTAGATGTGCCTAAAGCCAATTTGCTCTTCAAAGGCTCCATAGATAGTAATTGGGTGGTGGGGGCCACACTAGAGAAGAAGCTACTTCCTCTGCCTCTTTCTTTGGTCCTGGGGTCCTTCCTCAACCACAAGAAGAACAAGTTCCAATGTGGTTTTGGCATCACCATCGGTTAGACTTACCAGAGTGGAGGAAAGCCTATAGGCAATCTTCACAGAAAGGACAGACCAAGCCTGGACTCAACACTGAGTCTCACATCACTTCAATTTGTCCCCATCTGACTACTAAGAAGTTCATTGTTGTTGGTTCCAAAGGTTAATTTTTCCTAAATAATGTGTtaaaatatacactatatatacagaagtatgtggacaccccttgaaattagtggattcggttatttcagccatacccgttgctgacaggtgtataaaatcgagcacacagccatgcaatctccatagacaaacattggcagtagaatggccttactgaagagcccaGTAACTTTTTCAATGTGGCACTGCCATAAGATACTACATTTACAACAAGGTCAGTTTGTCAcctttctgtcctgctagagctgttattgtaaagtggaaacgtctaggagcaacaatggctcagccatgaagtggtaaaccacacaagctcacagaactgccgagtgctgaagcgcgtataaattgtctgtcctcgtttgcaacacactctaagcaaagtcagcacaataactgtttgtcgggagcttcatgaatcccattgaacacctttgggatgaattggaacgccgactgcgagccaggcctaattgcccaacctcacctaatgctattgtggctgaatgctgtggggacttgcttccaatcaacatctagtggaaagccttcccagaactgtggaggctgttatagcgccaaggggggaccaactccatatcaatgcccatgattttggaatgagatgttcaacgagcaggtgtccacatacttttgaccatgtagtgtatataatcATTGAAAGGTTAAACAAAGATATGTAAATAAGGTGCATCTTTAGGACTAAAATAATCAATCGAATTATCAAAATTGGGGTTAAAATGAATGGGTCAGAGATTGAGGACAATGTGTTGATGAGATTGGACAATGGCCATATACTTCAGAGACTAACATATTGAGACCAACATAGCAGACAGCAGTAAAAGAGGACTCAGTAAAACACTTGCTGTTAGGAAACTATCAAATTATAGTACTTTTGTTTTTAGGTCTGTGCCGGTACAGTTTTGTTTTGGTcggtttgtttttatttattttgtgttgTATGGTCTATCTGCTTCTTTTCACTTGTTTGTTTTTTAGGTTGGGGAGGCAGAGGGCAGGAAAATCTTTTTCATAATCGTATAGATTACCTGTATATATCTATTGGGAAAAGGATAAATGCCATTTCTTACAAAATA
>XM_021571766.2
AGCAATTTCAGCGAGGTTTCATTGAAAATAGGCAGCctaaagattgtactttttgcgTTGCTGAGGATCTTGTGAATTAGGCTTTTAATTATTTCCCGAGAAGGTGTTTCATCCGTGTCTTCTATAAGAACATCAGGATATAAATGGGCAGTGTTTTGGCAGCCAGCTCCCCCAACCCGCCATTGGCTCCTGCTGGTGGTAGTCCTGGCGGCCCAGGGATGACGGTACCCCCAGGCTTCTCAATGCCCCCAGTATCACCTGTACTGCCTTCAGGCAATGCGGCACCCGGTCAGCAGGTGGAGGCAGAAGGCCCTCTGTCCAACCCTGGCACGTTTGAGGAGTGCCACCGCAAGTGCAAAGAGGTGTTCCCCATGCAGATGGAGGGTGTAAGACTAATCGTTAACAAGGGCCTGAGTAATCACTTCCAGGTGAATCACACAGTAATGCTCAGCACCCTAGGCGATTCCAGTTACAGGTTCGGTGCCACCTATGTGGGAACTAAGCAGATGGGTCCAGCAGAGTCCTTCCCAGTCATGGTGGGAGACATGGACAACAGCGGCAGCCTCAATGCCCAGGTCATTCATCAGATCTCCAACAGAGTCCGGTCCAAACTAGCCTTCCAGACGCAGCAGCAAAAGTTTGTGAACTGGCAAGGAGATTGTGAGGTCCGAGGAGAGGactttactgctgctgttacccTGGGCAACCCGGATGTCCTTGTAGGCTCTGGTATTATTGTAGCACACTACATCCAGTCCATAACCCCATCCCTGGCtttgggaggggagctggtttaCCATCGCAGGCCAGGAGAGGAAGGCACGGTCATGTCTCTAGCTGGCAGATACACAGGCAGTAACTTCATTGCCACATTGACATTAGGGGGAGCAGGGGCACATGCCTCCTACTACCACAAAGCCAACGACACGTTGCAGTTGGGTGTTGAGTTTGAGGCTAGCACCCGAATGCAGGAGACCAGTGTATCATTTGGCTACCAGCTAGATGTGCCTAAAGCCAATTTGCTCTTCAAAGGCTCCATAGATAGTAATTGGGTGGTGGGGGCCACACTAGAGAAGAAGCTACTTCCTCTGCCTCTTTCTTTGGTCCTGGGGTCCTTCCTCAACCACAAGAAGAACAAGTTCCAATGTGGTTTTGGCATCACCATCGGTTAGACTTACCAGAGTGGAGGAAAGCCTATAGGCAATCTTCACAGAAAGGACAGACCAAGCCTGGACTCAACACTGAGTCTCACATCACTTCAATTTGTCCCCATCTGACTACTAAGAAGTTCATTGTTGTTGGTTCCAAAGGTTAATTTTTCCTAAATAATGTGTtaaaatatacactatatatacagaagtatgtggacaccccttgaaattagtggattcggttatttcagccatacccgttgctgacaggtgtataaaatcgagcacacagccatgcaatctccatagacaaacattggcagtagaatggccttactgaagagcccaGTAACTTTTTCAATGTGGCACTGCCATAAGATACTACATTTACAACAAGGTCAGTTTGTCAcctttctgtcctgctagagctgttattgtaaagtggaaacgtctaggagcaacaatggctcagccatgaagtggtaaaccacacaagctcacagaactgccgagtgctgaagcgcgtataaattgtctgtcctcgtttgcaacacactctaagcaaagtcagcacaataactgtttgtcgggagcttcatgaatcccattgaacacctttgggatgaattggaacgccgactgcgagccaggcctaattgcccaacctcacctaatgctattgtggctgaatgctgtggggacttgcttccaatcaacatctagtggaaagccttcccagaactgtggaggctgttatagcgccaaggggggaccaactccatatcaatgcccatgattttggaatgagatgttcaacgagcaggtgtccacatacttttgaccatgtagtgtatataatcATTGAAAGGTTAAACAAAGATATGTAAATAAGGTGCATCTTTAGGACTAAAATAATCAATCGAATTATCAAAATTGGGGTTAAAATGAATGGGTCAGAGATTGAGGACAATGTGTTGATGAGATTGGACAATGGCCATATACTTCAGAGACTAACATATTGAGACCAACATAGCAGACAGCAGTAAAAGAGGACTCAGTAAAACACTTGCTGTTAGGAAACTATCAAATTATAGTACTTTTGTTTTTAGGTCTGTGCCGGTACAGTTTTGTTTTGGTcggtttgtttttatttattttgtgttgTATGGTCTATCTGCTTCTTTTCACTTGTTTGTTTTTTAGGTTGGGGAGGCAGAGGGCAGGAAAATCTTTTTCATAATCGTATAGATTACCTGTATATATCTATTGGGAAAAGGATAAATGCCATTTCTTACAAAATA
>XM_036952545.1
AGCAATTTCAGCGAGGTTTCATTGAAAATAGGCAGCctaaagattgtactttttgcgTTGCTGAGGATCTTGTGAATTAGGCTTTTAATTATTTCCCGAGAAGGTGTTTCATCCGTGTCTTCTATAAGAACATCAGGATATAGTAGAATGGGCAGTGTTTTGGCAGCCAGCTCCCCCAACCCGCCATTGGCTCCTGCTGGTGGTAGTCCTGGCGGCCCAGGGATGACGGTACCCCCAGGCTTCTCAATGCCCCCAGTATCACCTGTACTGCCTTCAGGCAATGCGGCACCCGGTCAGCAGGTGGAGGCAGAAGGCCCTCTGTCCAACCCTGGCACGTTTGAGGAGTGCCACCGCAAGTGCAAAGAGGTGTTCCCCATGCAGATGGAGGGTGTAAGACTAATCGTTAACAAGGGCCTGAGTAATCACTTCCAGGTGAATCACACAGTAATGCTCAGCACCCTAGGCGATTCCAGTTACAGGTTCGGTGCCACCTATGTGGGAACTAAGCAGATGGGTCCAGCAGAGTCCTTCCCAGTCATGGTGGGAGACATGGACAACAGCGGCAGCCTCAATGCCCAGGTCATTCATCAGATCTCCAACAGAGTCCGGTCCAAACTAGCCTTCCAGACGCAGCAGCAAAAGTTTGTGAACTGGCAAGGAGATTGTGAGGTCCGAGGAGAGGactttactgctgctgttacccTGGGCAACCCGGATGTCCTTGTAGGCTCTGGTATTATTGTAGCACACTACATCCAGTCCATAACCCCATCCCTGGCtttgggaggggagctggtttaCCATCGCAGGCCAGGAGAGGAAGGCACGGTCATGTCTCTAGCTGGCAGATACACAGGCAGTAACTTCATTGCCACATTGACATTAGGGGGAGCAGGGGCACATGCCTCCTACTACCACAAAGCCAACGACACGTTGCAGTTGGGTGTTGAGTTTGAGGCTAGCACCCGAATGCAGGAGACCAGTGTATCATTTGGCTACCAGCTAGATGTGCCTAAAGCCAATTTGCTCTTCAAAGGCTCCATAGATAGTAATTGGGTGGTGGGGGCCACACTAGAGAAGAAGCTACTTCCTCTGCCTCTTTCTTTGGTCCTGGGGTCCTTCCTCAACCACAAGAAGAACAAGTTCCAATGTGGTTTTGGCATCACCATCGGTTAGACTTACCAGAGTGGAGGAAAGCCTATAGGCAATCTTCACAGAAAGGACAGACCAAGCCTGGACTCAACACTGAGTCTCACATCACTTCAATTTGTCCCCATCTGACTACTAAGAAGTTCATTGTTGTTGGTTCCAAAGGTTAATTTTTCCTAAATAATGTGTtaaaatatacactatatatacagaagtatgtggacaccccttgaaattagtggattcggttatttcagccatacccgttgctgacaggtgtataaaatcgagcacacagccatgcaatctccatagacaaacattggcagtagaatggccttactgaagagcccaGTAACTTTTTCAATGTGGCACTGCCATAAGATACTACATTTACAACAAGGTCAGTTTGTCAcctttctgtcctgctagagctgttattgtaaagtggaaacgtctaggagcaacaatggctcagccatgaagtggtaaaccacacaagctcacagaactgccgagtgctgaagcgcgtataaattgtctgtcctcgtttgcaacacactctaagcaaagtcagcacaataactgtttgtcgggagcttcatgaatcccattgaacacctttgggatgaattggaacgccgactgcgagccaggcctaattgcccaacctcacctaatgctattgtggctgaatgctgtggggacttgcttccaatcaacatctagtggaaagccttcccagaactgtggaggctgttatagcgccaaggggggaccaactccatatcaatgcccatgattttggaatgagatgttcaacgagcaggtgtccacatacttttgaccatgtagtgtatataatcATTGAAAGGTTAAACAAAGATATGTAAATAAGGTGCATCTTTAGGACTAAAATAATCAATCGAATTATCAAAATTGGGGTTAAAATGAATGGGTCAGAGATTGAGGACAATGTGTTGATGAGATTGGACAATGGCCATATACTTCAGAGACTAACATATTGAGACCAACATAGCAGACAGCAGTAAAAGAGGACTCAGTAAAACACTTGCTGTTAGGAAACTATCAAATTATAGTACTTTTGTTTTTAGGTCTGTGCCGGTACAGTTTTGTTTTGGTcggtttgtttttatttattttgtgttgTATGGTCTATCTGCTTCTTTTCACTTGTTTGTTTTTTAGGTTGGGGAGGCAGAGGGCAGGAAAATCTTTTTCATAATCGTATAGATTACCTGTATATATCTATTGGGAAAAGGATAAATGCCATTTCTTACAAAATA

Function

NR:

description
mitochondrial import receptor subunit TOM40 homolog

GO: NA

KEGG:

id description
K11518 TOM40; mitochondrial import receptor subunit TOM40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952546.1 False 2430 mRNA 0.46 10 35335048 35348295
XM_021571765.2 False 2455 mRNA 0.47 10 35335356 35348295
XM_021571766.2 False 2452 mRNA 0.46 10 35335507 35348295
XM_036952545.1 True 2456 mRNA 0.46 10 35335507 35348295

Neighbor

gene id symbol gene type direction distance location
LOC110496082 LOC106588242 coding upstream 10384 35237754 ~ 35324664 (+)
olah sast coding upstream 195214 35131761 ~ 35139834 (+)
LOC110496075 LOC106588237 coding upstream 348860 34959423 ~ 34986188 (+)
LOC110496074 NA coding upstream 413297 34918537 ~ 34921751 (+)
mbpa LOC106588233 coding upstream 436635 34883492 ~ 34898413 (+)
LOC118941149 NA coding downstream 64476 35412771 ~ 35433941 (+)
LOC118941148 NA coding downstream 92848 35441143 ~ 35504636 (+)
LOC110496101 LOC106588519 coding downstream 541271 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 622762 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 650904 35999199 ~ 36021773 (+)
G1541982 NA non-coding upstream 7295 35325690 ~ 35327753 (+)
G1542017 NA non-coding upstream 18216 35316632 ~ 35316832 (+)
G1542015 NA non-coding upstream 25187 35309643 ~ 35309861 (+)
G1541987 NA non-coding upstream 54752 35279209 ~ 35280296 (+)
G1542032 NA non-coding downstream 16543 35364838 ~ 35367546 (+)
G1542036 NA non-coding downstream 24543 35372838 ~ 35373207 (+)
G1542037 LOC106588244 non-coding downstream 25576 35373871 ~ 35386463 (+)
G1542038 NA non-coding downstream 38676 35386971 ~ 35387648 (+)
G1542043 NA non-coding downstream 44659 35392954 ~ 35393179 (+)
G1541989 NA other upstream 51342 35282603 ~ 35283706 (+)
LOC110496058 LOC106588349 other upstream 1205389 34127192 ~ 34133734 (+)
G1540996 NA other upstream 1255974 34078718 ~ 34079074 (+)
LOC110496043 LOC106588212 other upstream 1797484 33535229 ~ 33537569 (+)
G1542052 LOC106588245 other downstream 53542 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 130540 35478835 ~ 35502933 (+)
G1542090 NA other downstream 181248 35529543 ~ 35606179 (+)
G1542253 NA other downstream 487541 35835836 ~ 35836617 (+)

Expression


Co-expression Network