LOC110496085


Basic Information

Item Value
gene id LOC110496085
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35346895 ~ 35351655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469509.2
ATAAATAAGGTAAAAGCACTGAATGTGTGAGTATCCCTAACCTTGCCAAAAGACAAAGCGTCATGAATGGgtcagtggttcaccaatcagggccttgattgGCTAGGCAACAGTAACAAGGAGTGATGTGTAATACATTTTTCTTTGGACACAAATGTTCTCGCAACGTTCCCCaacatgtctagaacattaatatcttatgttctgagaacacaatcatgttctgtgtatgtttggtggaacagtgatggaatattctcctaaaaaaaaaaactggacacatgaatgttcttTCGAACGTCCCATAAAAAGCGTCTAGAACATTGTTGTATATTCTGAGAATATTGTATGTTCTGCTTGACATTAAGGGCATGCCCTAATGTTCTAACTAACACAAAAGGTTCTCATAAGGTTTTTGTTACATAGAATGTTCCCTCTAATTAACTGGACACTCAACATTAGGGGAACATTACACAAACGTTCTCTCCCTCGAACTGTTAGCTGGGAAGACACTAGCTGCTTCCAGGTATCTTTTTTTATCACACTGGCTACAATATCTGGGATGAGAAACAGAGTTGGATGTTTTCTTCACCAATTGTCTATTTCTCCATTAACAGCCAGTCATGAAGGTCCTAGTGCTGCTCGCGCTTGCTGTTTTCACTGGGTGCAAAACTTATGTTCTGTGGCAGGACCAGTCTAAGTGGATCAGACAGTGGTGCCACACAGTCAAAGTGCCTATGCTGTGAACCAGTACACTGTGGCCAGGTGACTCCTCTGACTCAGGACCTGCTGGGAAGGCCAAACAACTGAAGGCTCACCTGGAGAAGGAACTGAGCACTGGCTGAAGGCCACTCTTCTCCTGAAGAGTGAGGAGCTGAAGGGAAGCCTGGAGAAGGAACTGAGCACTGGCTGAAGGCCACTCTTCTCCTGAAGAGTGAGGAGCTGAAGGGAAGCCTGGAGAAGGAACTGAGCACTGGTTGAAGGCCACTCTTCTCCTGAAGAGTGAGGAGCTGAAGGGAAGCCTGGAGAAGAAACTGAGCACTGGCTAAAGGCCACTCTTCTCCTGAAGAGTGAGGAGCTGAAGGGAAGCCTGGAGAAGGAACTGAGCACTGGCTAAAGGCCACTCTTCTCCTGAAGAGTGAGGAGCTGAAGGGAAGCCTGGAGAAGGAACTGAGCACTGGCTAAAGGCCACACTTCTCCCAAAGAGTGAGGAGCTGAAGGGAAGCCTGGAGAAGAGTATGTAGCAGCTGCAGGCCGAGCTGGGCCCCTAGCTGAAGCAGAAGTGGCCAGAACCTGGAGGAGTTCCAGAATGTCATGATTTCCCTGACCCAGAGCTCGAAGACTGAGCTGACTCAGAGAACACAGGAGCTCCAGCAGAATCTAGCCCCATATGGAGAGGACTTGACGACCCAACTGCCATTAAGAAGTGCCAGTAATCAGACTGATTTGACTTGTTCTACTAGAACTGCGTCCTGATTAATAATTTTCCATCAAAGTCCAAAAGGGgcaatatgtacagtatactgaCAGAGTATTGTTTGTCTCATACATAATAAACAAACACACGTCTCTGTTTCAAGTTAAATACGAAGCCTAATGCAATAACAGTCAACTTAAAAATAGTATCATATGTTATATCAAATTTATAACCGTGAACAAAAGAAATGAACACAACAATTTAAGATTTTAttgagttaaagttcatataaggaaatcagtcaattgaaataaattcacgAGGCtgtaatctatagatttcacatgactgggaacacatatgaatctgttagtcacagataccttaaataaaaaagtaggggcgtgggtcagaaatccagtcagtatctgatgtgaccatTTGCCTGTGGAATGAAGTCCCACTTCTTTTTAATCGCTTTGCGaatttgctggatattggcgggaactgtaacacgctgtcgtacaccttgatccagagcatcccaaacatgctcaatgggtgatatgtctggtgggtatgcaggccatggaagaactgggacattttcagcttccgggaaatgtgtacagatccttgagacatggggccatgcataaTCACGCTGAAACATGGTGTTGGCGGAAGATGAATGGcccgacaatgggcctcaggatctcatcacggtatctctgtgcattcaaattgccagcgataaaatgcaattatgttcgttgtccgtagcttatgcctgccccacCGCCATCCCAGGGCACTCTGCTCACaatattgacatcagcaaaccgctcaaccacatgtggtctgcagttgtgaaggCGGTTGGACGTACagcaaaattctctaaaacgacattgaggcagcttatggtagtgATATTAACAGGAAatgctctagtggacattcctgctgtcagcatgcctactcaaaacttgagacatctgtggcattatgttgtgacaaaactgcacattttagagtggccttttagtgtccccagcacaaggtgagcctgtgtaatgatcatgttgtttaaccagcttcttgatataccacaactgtcaggtggatggattattttggtaaagaagaaatgctcaccaacagggatgtaaacaaatttgtgcacaaattgagagaaataagtttttttgtgcatatggaacatttcagggatcttttatatcagctcatgaaatatgggaccaacactttccatgttgcgcctatatttttgttcagtgtaaatgtaTGTACCACTATTGTTTCACATGATCAGTtattggactcaccatctcctgaCCAATATCTACATGTGACTCAGGACTATATTACAGAAGATGTGCAGGATTCTATCATCAATAGAATAATCACATCTACTGTTGCCCTCTTGAAAAGGGTCTCAATTTCTTCAAGCAAACTTTCCTACATATCAGCATATTTGTCAGTATTATCATGTGTGATTTATATAAATTAAACTCATGAGCAGCATTCAGCTTATTCTCATCTTTTTAAAACAATTCAGGCTCTGTCAACTATGAGCAGAGAATTTGAAGCAATAAGAAACAAAACCAATTCTCTCTGTATTTTGTAAGAAATGGCATTTATCCTTTTCCCAATAGATATATACAGGTAATCTATACGATTATGAAAAAGATTTTCCTGCCCTCTGCCTCCCCAACCTAAAAAACAAACAAGTGAAAAGAAGCAGATAGACCATAcaacacaaaataaataaaaacaaaccgACCAAAACAAAACTGTACCGGCACAGACCTAAAAACAAAAGTACTATAATTTGATAGTTTCCTAACAGCAAGTGTTTTACTGAGTCCTCTTTTACTGCTGTCTGCTATGTTGGTCTCAATATGTTAGTCTCTGAAGTATATGGCCATTGTCCAATCTCATCAACACATTGTCCTCAATCTCTGACCCA
>TU1765900
gagttaaagttcatataaggaaatcagtcaattgaaataaattcacgAGGCtgtaatctatagatttcacatgactgggaacacatatgaatctgttagtcacagataccttaaataaaaaagtaggggcgtgggtcagaaatccagtcagtatctgatgtgaccatTTGCCTGTGGAATGAAGTCCCACTTCTTTTTAATCGCTTTGCGaatttgctggatattggcgggaactgtaacacgctgtcgtacaccttgatccagagcatcccaaacatgctcaatgggtgatatgtctggtgggtatgcaggccatggaagaactgggacattttcagcttccgggaaatgtgtacagatccttgagacatggggccatgcataaTCACGCTGAAACATGGTGTTGGCGGAAGATGAATGGcccgacaatgggcctcaggatctcatcacggtatctctgtgcattcaaattgccagcgataaaatgcaattatgttcgttgtccgcagcttatggtagtgATATTAACAGGAAatgctctagtggacattcctgctgtcagcatgcctactcaaaacttgagacatctgtggcattatgttgtgacaaaactgcacattttagagtggccttttagtgtccccagcacaaggtgagcctgtgtaatgatcatgttgtttaaccagcttcttgatataccacaactgtcaggtggatggattattttggtaaagaagaaatgctcaccaacagggatgtaaacaaatttgtgcacaaattgagagaaataagtttttttgtgcatatggaacatttcagggatcttttatatcagctcatgaaatatgggaccaacactttccatgttgcgcctatatttttgttcagtgtaaatgtaTGTACCACTATTGTTTCACATGATCAGTtattggactcaccatctcctgaCCAATATCTACATGTGACTCAGGACTATATTACAGAAGATGTGCAGGATTCTATCATCAATAGAATAATCACATCTACTGTTGCCCTCTTGAAAAGGGTCTCAATTTCTTCAAGCAAACTTTCCTACATATCAGCATATTTGTCAGTATTATCATGTGTGATTTATATAAATTAAACTCATGAGCAGCATTCAGCTTATTCTCATCTTTTTAAAACAATTCAGGCTCTGTCAACTATGAGCAGAGAATTTGAAGCAATAAGAAACAAAACCAATTCTCTCTGTATTTTGTAAGAAATGGCATTTATCCTTTTCCCAATAGATATATACAGGTAATCTATACGATTATGAAAAAGATTTTCCTGCCCTCTGCCTCCCCAACCactagatgttgattggaagcaagtccccacagcattcagccacaatagcattaggtgaggttgggcaattaggcctggctcgcagtcggcgttccaattcatcccaaaggtgttcaatgggattcatgaagctcccgacaaacagttattgtgctgactttgcttagagtgtgttgcaaacgaggacagacaatttatacgcgcttcagcactcggcagttctgtgagcttgtgtggtttaccacttcatggctgagccattgttgctcctagacgtttccactttacaataacagctctagcaggacagaaaggTGACAAACTGACCTTGTTGTAAATGTAGTATCTTATGGCAGTGCCACATTGAAAAAGTTACtgggctcttcagtaaggccattctactgccaatgtttgtctatggagattgcatggctgtgtgctcgattttatacacctgtcagcaacgggtatggctgaaataaccgaatccactaatttcaaggggtgtccacatacttctgtatatatagtgtatattttaACACATTATTTAGGAAAAATTAACCTTTGGAACCAACAACAATGAACTTCTTAGTAGTCAGATGGGGACAAATTGAAGTGATGTGAGACTCAGTGTTGAGTCCAGGCTTGGTCTGTCCTTTCTGTGAAGATTGCCTATAGGCTTTCCTCCACTCTGGTAAGTCTAACCGATGGTGATGCCAAAACCACATTGGAACTTGTTCTTCTTGTGGTTGAGGAAGGACCCCAGGACCAAAGAAAGAGGCAGAGGAAGTAGCTTCTTCTCTAGTGTGGCCCCCACCACC

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469509.2 False 3410 mRNA 0.42 3 35347944 35351655
TU1765900 True 2153 TUCP 0.41 3 35346895 35349662

Neighbor

gene id symbol gene type direction distance location
LOC110496081 LOC106588241 coding downstream 143960 35151351 ~ 35203984 (-)
ago3b i2c3 coding downstream 254127 35051395 ~ 35093817 (-)
LOC110496800 LOC106588240 coding downstream 329523 35016978 ~ 35018421 (-)
LOC110496079 LOC106588239 coding downstream 331787 35012010 ~ 35016157 (-)
LOC110496078 LOC106588238 coding downstream 348705 34997472 ~ 34999239 (-)
si:ch73-347e22.4 LOC106588244 coding upstream 26144 35377799 ~ 35392845 (-)
LOC110496091 LOC106588245 coding upstream 49071 35400726 ~ 35407830 (-)
LOC118941136 NA coding upstream 56324 35407979 ~ 35415035 (-)
LOC118941138 NA coding upstream 63533 35415188 ~ 35419901 (-)
LOC110496802 LOC106588245 coding upstream 70719 35422374 ~ 35427024 (-)
G1543086 NA non-coding downstream 13642 35332272 ~ 35334302 (-)
G1543088 NA non-coding downstream 17790 35327890 ~ 35330154 (-)
G1543087 NA non-coding downstream 20154 35325842 ~ 35327790 (-)
G1543093 NA non-coding downstream 26896 35320778 ~ 35321048 (-)
G1543092 NA non-coding downstream 27460 35319807 ~ 35320484 (-)
G1543097 NA non-coding upstream 22193 35373848 ~ 35375167 (-)
G1543096 NA non-coding upstream 23776 35375431 ~ 35376793 (-)
G1543118 NA non-coding upstream 44711 35396366 ~ 35396641 (-)
G1543122 NA non-coding upstream 48599 35400254 ~ 35400492 (-)
G1543124 NA non-coding upstream 49073 35400728 ~ 35408945 (-)
G1542988 sast other downstream 209390 35137637 ~ 35138554 (-)
atp9b atp9b other downstream 608305 34735374 ~ 34794929 (-)
G1541318 NA other downstream 1185486 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1673713 33657641 ~ 33674304 (-)
G1543128 LOC106588245 other upstream 100963 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 143667 35492995 ~ 35499681 (-)
G1543346 LOC106588513 other upstream 659332 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1949853 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2570500 37922153 ~ 37930745 (-)

Expression


Co-expression Network