LOC110496091 (LOC106588245)


Basic Information

Item Value
gene id LOC110496091
gene name LOC106588245
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35400726 ~ 35407830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571782.2
attttataataattGCTCAAGGAAATAACTCTCCACAAGTGTCATCAGTGTCTTGTGAAAGAACAGGGGTCATAGACAACATCTTATTTATTTCAGGGAGCGGAAATTAAAAACGTTGTTCCACTTCCCCTTTAGTCGATCTTTCACCCGCCACAACGTCCGGTTGAAATTCaaatcgctagctagctaaacaattacaACAAAGGCCGATTAAATATCTGGCGACTTTCATGACAAACGATATCTGATAGAAGTGTAGACAGCACCAGCTACGCAAGGATTGTACCAAGTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAATGGCGTCCGGGGAAGGGGCAACGGCTTCGGAAGAAGGGGAAGGGGCAACGGCTTCGGAAGAAGGGGAAGGGGCAATGGAGTCGGAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCTGATGAAGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGACAACTGCACCTTTGAAGTGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaactgggtAGGCCGAGGAAGTACCTGCTGTCacccgaggaggaagaggagagaaagatactGAAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCGGGGATCCCCCTGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGTTAGAGGTGCCCACTTACAGAAGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCCCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCTGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGTTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCAATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGAGCAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTTTTGCTTTCTCAACTAACCTATGTGTCTGTTGGTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTGTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctcTCCGTAAGCTCTGTAGTTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCCTAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATCATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGTTTTTGATGTTTTTAATCTCAATAAAACCTAAAATATGACT
>XM_021571784.2
tagctatgGTGATTAAttgcactgccaaggtggagaggaaGTCCTGGAAAATAGACATCGTTGTGGATGCGGCGGAATGTTTCCTGGGCCTGAAAGACTTCTTGGCAGAGGAGTTGCATGGAGTATTGTCACAAGCCTCTCAGTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAATGGCGTCCGGGGAAGGGGCAACGGCTTCGGAAGAAGGGGAAGGGGCAACGGCTTCGGAAGAAGGGGAAGGGGCAATGGAGTCGGAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCTGATGAAGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGACAACTGCACCTTTGAAGTGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaactgggtAGGCCGAGGAAGTACCTGCTGTCacccgaggaggaagaggagagaaagatactGAAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCGGGGATCCCCCTGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGTTAGAGGTGCCCACTTACAGAAGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCCCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCTGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGTTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCAATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGAGCAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTTTTGCTTTCTCAACTAACCTATGTGTCTGTTGGTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTGTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctcTCCGTAAGCTCTGTAGTTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCCTAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATCATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGTTTTTGATGTTTTTAATCTCAATAAAACCTAAAATATGACT
>XM_036952596.1
CAATCCATAAGTAATACTGACGTCTGCAgagtctgactctcagccgagTTCCCCGACTCTACCCAGCGTTTATTGACAAGATTATTCCCGTCATTCTTAgtttagctaaatggtatagtcgttgtgcattctcaatggacatttgggtcttttcgtaaattcgctctggctatctacagtactctgatttcagagcactctcctcTGAGTGTAATGAATGTATGAGCGCTCAACCCCcattgaatatggctggtgtcagtaaacttCAGCAAAAGAGCgtaatttacagtcacagttacagtcaccaacgctctggaaaactgcctaaccagctctgctaggTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAATGGCGTCCGGGGAAGGGGCAACGGCTTCGGAAGAAGGGGAAGGGGCAACGGCTTCGGAAGAAGGGGAAGGGGCAATGGAGTCGGAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCTGATGAAGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGACAACTGCACCTTTGAAGTGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaactgggtAGGCCGAGGAAGTACCTGCTGTCacccgaggaggaagaggagagaaagatactGAAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCGGGGATCCCCCTGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGTTAGAGGTGCCCACTTACAGAAGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCCCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCTGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGTTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCAATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGAGCAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTTTTGCTTTCTCAACTAACCTATGTGTCTGTTGGTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTGTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctcTCCGTAAGCTCTGTAGTTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCCTAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATCATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGTTTTTGATGTTTTTAATCTCAATAAAACCTAAAATATGACT

Function

NR:

description
chromosomal protein D1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571782.2 False 2930 mRNA 0.42 2 35400726 35404746
XM_021571784.2 False 2783 mRNA 0.42 2 35400726 35405239
XM_036952596.1 True 2982 mRNA 0.42 2 35400726 35407830

Neighbor

gene id symbol gene type direction distance location
si:ch73-347e22.4 LOC106588244 coding downstream 7881 35377799 ~ 35392845 (-)
LOC110496085 NA coding downstream 49071 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 coding downstream 196742 35151351 ~ 35203984 (-)
ago3b i2c3 coding downstream 306909 35051395 ~ 35093817 (-)
LOC110496800 LOC106588240 coding downstream 382305 35016978 ~ 35018421 (-)
LOC118941136 NA coding upstream 149 35407979 ~ 35415035 (-)
LOC118941138 NA coding upstream 7358 35415188 ~ 35419901 (-)
LOC110496802 LOC106588245 coding upstream 14544 35422374 ~ 35427024 (-)
LOC118941137 NA coding upstream 21741 35429571 ~ 35436004 (-)
LOC118941147 LOC106588245 coding upstream 28329 35436159 ~ 35440127 (-)
G1543122 NA non-coding downstream 234 35400254 ~ 35400492 (-)
G1543118 NA non-coding downstream 4085 35396366 ~ 35396641 (-)
G1543096 NA non-coding downstream 23933 35375431 ~ 35376793 (-)
G1543097 NA non-coding downstream 25559 35373848 ~ 35375167 (-)
G1543103 NA non-coding downstream 40156 35340402 ~ 35360570 (-)
G1543155 NA non-coding upstream 14502 35422332 ~ 35472010 (-)
G1543161 NA non-coding upstream 69917 35477747 ~ 35485186 (-)
G1543125 LOC106588245 non-coding upstream 71005 35478835 ~ 35502036 (-)
G1543163 NA non-coding upstream 76177 35484007 ~ 35491478 (-)
G1543133 NA non-coding upstream 85168 35492998 ~ 35500613 (-)
G1542988 sast other downstream 262172 35137637 ~ 35138554 (-)
atp9b atp9b other downstream 661087 34735374 ~ 34794929 (-)
G1541318 NA other downstream 1238268 34161927 ~ 34162458 (-)
G1543128 LOC106588245 other upstream 44788 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 87492 35492995 ~ 35499681 (-)
G1543346 LOC106588513 other upstream 603157 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1893678 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2514325 37922153 ~ 37930745 (-)

Expression


Co-expression Network