LOC110496802 (LOC106588245)


Basic Information

Item Value
gene id LOC110496802
gene name LOC106588245
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35422374 ~ 35427024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952597.1
gctatgGTGATTaatggcactgccaaggtggagaggaaGTCCTGGAAAATAGACATTGTTGTGGATGCGACGGAATGTTTCCTGGGACTGAAAGACTTCTTGGCAGAGGAGTTGCATGGAGTATTGTCACAAGCCTCTCAGTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGGGGCAACAATGTCGGAAGAAGGGGCAACAATGTCGGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACGGCTTCGGAAGAAGGGGCAATTGCGTCGAAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCCGATGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGCGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaattgggtagGCCGAGGAAGTACCTGTCacccgaggaggaagaggagagaaagatactGAAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCAGGGATCCCCCCGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGATAGAGGTGCCAACTTACAGACGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCTCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCCGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGCTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCGATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGACAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTCTTGCTTTCTCAACTAACCTATGTGTCTGTTTGCTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTTTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctcTCCGTAAGCTCTGTAGTTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATAATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGtttttgatgtttttttaatCTCAATAAAACCTCAAATATGAC

Function

NR:

description
serine/arginine-rich splicing factor SR45-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952597.1 True 2764 mRNA 0.42 3 35422374 35427024

Neighbor

gene id symbol gene type direction distance location
LOC118941138 NA coding downstream 2473 35415188 ~ 35419901 (-)
LOC118941136 NA coding downstream 7339 35407979 ~ 35415035 (-)
LOC110496091 LOC106588245 coding downstream 14544 35400726 ~ 35407830 (-)
si:ch73-347e22.4 LOC106588244 coding downstream 29529 35377799 ~ 35392845 (-)
LOC110496085 NA coding downstream 70719 35346895 ~ 35351655 (-)
LOC118941137 NA coding upstream 2547 35429571 ~ 35436004 (-)
LOC118941147 LOC106588245 coding upstream 9135 35436159 ~ 35440127 (-)
LOC118941146 LOC106588245 coding upstream 16238 35443262 ~ 35446995 (-)
LOC118941144 LOC106588245 coding upstream 23326 35450350 ~ 35454885 (-)
LOC118941142 LOC106588245 coding upstream 30410 35457434 ~ 35464220 (-)
G1543124 NA non-coding downstream 13429 35400728 ~ 35408945 (-)
G1543122 NA non-coding downstream 21882 35400254 ~ 35400492 (-)
G1543118 NA non-coding downstream 25733 35396366 ~ 35396641 (-)
G1543096 NA non-coding downstream 45581 35375431 ~ 35376793 (-)
G1543097 NA non-coding downstream 47207 35373848 ~ 35375167 (-)
G1543161 NA non-coding upstream 50723 35477747 ~ 35485186 (-)
G1543125 LOC106588245 non-coding upstream 51811 35478835 ~ 35502036 (-)
G1543163 NA non-coding upstream 56983 35484007 ~ 35491478 (-)
G1543133 NA non-coding upstream 65974 35492998 ~ 35500613 (-)
G1543154 NA non-coding upstream 84448 35511472 ~ 35511985 (-)
LOC110496081 LOC106588241 other downstream 242346 35151351 ~ 35203984 (-)
G1542988 sast other downstream 283820 35137637 ~ 35138554 (-)
atp9b atp9b other downstream 682735 34735374 ~ 34794929 (-)
G1541318 NA other downstream 1259916 34161927 ~ 34162458 (-)
G1543128 LOC106588245 other upstream 25594 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 68298 35492995 ~ 35499681 (-)
G1543346 LOC106588513 other upstream 583963 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1874484 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2495131 37922153 ~ 37930745 (-)

Expression


Co-expression Network