LOC118941146 (LOC106588245)


Basic Information

Item Value
gene id LOC118941146
gene name LOC106588245
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35443262 ~ 35446995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952616.1
GCCTGCTTGAGATCCGGGGCTGTCTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGGGGCAACAATGTCGGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACGGCTTCGAAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCCGATGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGCGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaattgggtagGCCGAGGAAGTACCTGTCacccgaggaggaagaggagagaaagatactGAAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCAGGGATCCCCCCGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGATAGAGGTGCCAACTTACAGACGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCCCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCCGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGCTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCAATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGAGCAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTCTTGCTTTCTCAACTAACCTATGTGTCTGTTTGCTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTTTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctcTCCGTAAGCTCTGTAGTTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATAATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGtttttgatgtttttttaatCTCAATAAAACCTCAAATATGACTT
>XM_036952618.1
gccttccGACCGTTCTACTCACATTGTTCTAAGTCACGCCTCCTGCTTCGCTGTTGTTGGCAATGCCCACGTTGGTAGTTAAAATGTACACCACAACACATTACTCATGGAACTACTTCCGTGTTATGCAGACATACTCACACTTGGCACCATCGAGTGGGAAGCCCTAAGTAGTTCACAAGACCTCCTAGGAAGTGAGCTGGAAGGAAAGAAAGGAGCCAGGTTGCAAGAAAACAGATGAAAGAAGGGGCAACAATGTCGGAAGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACAATGTCGGATGAAGGGGCAACGGCTTCGAAAGAAGGGGCAATGGATGCCACTGGTAGTGAAGAGGAGTCCGATGCCTTGTCTAATGGCAGCCCCATACCACCTAAGAGGGGAAGGGGTAGGCCCAAAGGATCAGGCTCCAAGAAACCTAAGATACTGAGGGTACTAGACAAGCAGCCACGGGGCAGGCCACGTAAAGTGGTTGACCCTAATGCTGTTTCAGCAGAGCGTGGCCGGCCCAAAAAagttcagcaaaaaaaaaaattgggtagGCCGAGGAAGTACCTGTCacccgaggaggaagaggagagaaagatactGAAAAGCCAACCTAGAGTGTGGAAGCCGCTCGGAAGGCCGCGCATCCATCCCCGCAGGGATCCCCCCGCCACACCCACCTCTGCCGAGCCACGGAGAAGAGGCCGTCCACTCAAGGCATCAACAGATAGAGGTGCCAACTTACAGACGAACCCACCTCCAACTTCTAAAGTTTCAAAGCCCCCCGCTAAAGATGATTCCCCGCGAAAGAGTGGCCGCCCCTTAGGCTCCTTCAAAGCCAAGAGAGCAGCAGAGACGGATAGGTCCAACAGTTCACCCTCAGCCAAACAGGGTTGCACTGTTTCTCCAATAGTAAGGCTTTACCGCCGCTCCAACGGTAAAGCAAATGTGTTCGATGAAGCTGCCTTCCAAGCCCAGAGGCAAAAAGGCAAGAGAAAGTCTGTGAACGCTGATTATACAGCGTATGATTCAGAGGAGGAAAATGAAGATACACAGAGAAATGAGGATGAAGTCTTTTCTCTAGTAGAAGATGACAAAGAAGAGGAAATTAAACCACGCAATGGTCATGGCAAGGCTAGTAAACCTGGTAAGGTAGTGGCAGCTATTAAGAAAAAAGAAGTGGTTGTTCCTAAGAGGGGGGGCAGAAAGCCTGGCTCAATCAAAAAGGTTGTAAAGTAAAAGGAACCTGGGCGGAGCAGACTGAACGAGTATCAGTAGCATCTTGTAAGatgtttttttaacattttattatcTCTTACCCAGCTCTTTCTTGCTTTCTCAACTAACCTATGTGTCTGTTTGCTCTTGCTGTTATTTTTTATGGTTTGATGCCTTCGTGGAAACCTTGTGGAAAAGAAAAGTACTTTTTGTACTTCCTTGGTCATCTATAGCTTGAATGATGTGAAGACAATTTCATTGACAGTTGTTAATCTTGTATTATTCTGTTCAGACTTATCCCATTTAGATTTTTTCACTGGTACTGTCATTGATACAGTTTCTAATTCCATACACATCCTATAGTTGATGATATTCTCATTGAGGTTTGTTAATCTTGTATTGGTCTGTGCAGATTTGTCCAAATAAGCTCAAATGGTTTAAATCAATTGAATTAGttaagtattttgttttttgttttttatctcTCCGTAAGCTCTGTAGTTTTCGAATTGCTAATGTCTTCTAATTTTATTTGCCTGAATTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATAATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGtttttgatgtttttttaatCTCAATAAAACCTCAAATATGA

Function

NR:

description
lens epithelium-derived growth factor-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952616.1 False 2629 mRNA 0.42 2 35443262 35446995
XM_036952618.1 True 2759 mRNA 0.42 2 35443265 35446362

Neighbor

gene id symbol gene type direction distance location
LOC118941147 LOC106588245 coding downstream 3135 35436159 ~ 35440127 (-)
LOC118941137 NA coding downstream 7258 35429571 ~ 35436004 (-)
LOC110496802 LOC106588245 coding downstream 16238 35422374 ~ 35427024 (-)
LOC118941138 NA coding downstream 23361 35415188 ~ 35419901 (-)
LOC118941136 NA coding downstream 28227 35407979 ~ 35415035 (-)
LOC118941144 LOC106588245 coding upstream 3355 35450350 ~ 35454885 (-)
LOC118941142 LOC106588245 coding upstream 10439 35457434 ~ 35464220 (-)
LOC118941145 LOC106588245 coding upstream 17512 35464507 ~ 35469032 (-)
LOC118941143 LOC106588245 coding upstream 24589 35471584 ~ 35476106 (-)
LOC118941139 NA coding upstream 31663 35478658 ~ 35483335 (-)
G1543124 NA non-coding downstream 34317 35400728 ~ 35408945 (-)
G1543122 NA non-coding downstream 42770 35400254 ~ 35400492 (-)
G1543118 NA non-coding downstream 46621 35396366 ~ 35396641 (-)
G1543096 NA non-coding downstream 66469 35375431 ~ 35376793 (-)
G1543097 NA non-coding downstream 68095 35373848 ~ 35375167 (-)
G1543161 NA non-coding upstream 30752 35477747 ~ 35485186 (-)
G1543125 LOC106588245 non-coding upstream 31840 35478835 ~ 35502036 (-)
G1543163 NA non-coding upstream 37012 35484007 ~ 35491478 (-)
G1543133 NA non-coding upstream 46003 35492998 ~ 35500613 (-)
G1543154 NA non-coding upstream 64477 35511472 ~ 35511985 (-)
LOC110496085 NA other downstream 93600 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 263234 35151351 ~ 35203984 (-)
G1542988 sast other downstream 304708 35137637 ~ 35138554 (-)
atp9b atp9b other downstream 703623 34735374 ~ 34794929 (-)
G1541318 NA other downstream 1280804 34161927 ~ 34162458 (-)
G1543128 LOC106588245 other upstream 5623 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 48327 35492995 ~ 35499681 (-)
G1543346 LOC106588513 other upstream 563992 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1854513 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2475160 37922153 ~ 37930745 (-)

Expression


Co-expression Network