LOC118941150


Basic Information

Item Value
gene id LOC118941150
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35519535 ~ 35679900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037451.1
acacaggcacacacacccgGGCTGACTCCTTCCCTCACACGCCTACTATCCACTTTCGCCTGAGACCGCAGCCAGCGCAGGGCtcagttttttatttgattttttatttgCCTTGCTTGCTTTGGGTCTTTCCCTCTTGTACAGCGAGACGAGTCCCATTTCACCCCTCCTCTGCCCCTGAAAACATAGGCCCTGGATTGTCCCTGCATCAGACTGCATGCTACCAATTGATTTGTGCATCTACTCCTCCCTATTATTTTAGCTCTTTATATTAAAAATTGCTCTCTAGCTTTAATGTAAAATTCGGTTCATTTTGAGTAATTTCTTCACATACCCATTCTGGAAGAGAGGACGAAGAAAAGAAGAGAACGCTCACGGAATGGACAGATGAAAGGGGACAGCAGAAAAAAGAGTGAGAAAATGGAGAGCATGTTCTGTGGGAGAGcaagagagACCTGACCTATGCACCCAACATTGCCAACCCCATTCCATGTAGCCCAAGACCTGAAAAGAATGCTGTGGTCTACTCTTGTCTTGAGTCCGTGGAAACTTGCCACTAAGGAGTAACAATGGAAAGAATTTCAGTCCAGCCTAAGTAAGGTAACATCTCTGGCAAGTTTGGAGGTTTAGAGATGAGCCATTATGAGGTGGAGCCGTTCACCaacccaacacacaacacaattATATGGTATCCAAACTAGTGGCAGATTGACTCTTTCTTTCAGGGATCGTCATAAGTAAGTTTCCCACTAACTGCTGTTCGCCGTTTCGCTACAAAAGCCTTTATACACCTCCCGCTATCATTGTTGTGTTGTACTTTTATCCTCAAATAGATTCACATAAGTATATTTAGAGACTTGACTTATATCTAAGCATGTTTTGTTGTC
>TU1765941
ATCCACTTTCGCCTGAGACCGCAGCCAGCGCAGGGCtcagttttttatttgattttttatttgCCTTGCTTGCTTTGGGTCTTTCCCTCTTGTACAGCGAGACGAGTCCCATTTCACCCCTCCTCTGCCCCTGAAAACATAGGCCCTGGATTGTCCCTGCATCAGACTGCATGCTACCAATTGATTTGTGCATCTACTCCTCCCTATTATTTTAGCTCTTTATATTAAAAATTGCTCTCTAGCTTTAATGTAAAATTCGGTTCATTTTGAGTAATTTCTTCACATACCCATTCTGGAAGAGAGGACGAAGAAAAGAAGAGAACGCTCACGGAATGGACAGATGAAAGGGGACAGCAGAAAAAAGAGTGAGAAAATGGAGAGCATGTTCTGTGGGAGAGcaagagagACCTGACCTATGCACCCAACATTGCCAACCCCATTCCATGTAGCCCAAGACCTGAAAAGAATGCTGTGGTCTACTCTTGTCTTGAGTCCGTGGAAACTTGCCACTAAGGAGTAACAATGGAAAGAATTTCAGTCCAGCCTAAGTAAGGTAACATCTCTGGCAAGTTTGGAGGTTTAGAGATGAGCCATTATGAGGTGGAGCCGTTCACCaacccaacacacaacacaattATATGGTATCCAAACTAGTGGCAGATTGACTCTTTCTTTCAGGGATCGTCATAAGTCACAGGTGAGGTCCTTGGGAACAAGGCTGCATGCAAGTTCATCAGAATTTGGgtgaataaaaaaaactattaggTAGAAGGATGTAATCGGGATCAAGAAGATGTCATTGGATGAACAGCCaaggaaacacagaaatatcacCACCTAAAGCACCAGTTACCCTACTGGAAATATCACCACCTAAAGCATCAGTTACCCTACTGGAAATATCACCACCTAAAGCACCAGTTACCCTACTGGAAATATCACCACCTAAAGCATCAGTTACCCTACTGGAAATATCACCACCTAAAGCACCAGTTACCCTACTGGAAATATCACCACCTAAAGCACCAGTTACCGTACTGGAAATATCACCACCTAAAGCACCATATAACCCTACTGGAAATATCACCACCTAAAGCACCAGTTACCGTACTGGAAATATCACCGCCTAAAGCACCAGTTACCCTACTGGAAAAATCACTGCCTAAAGCACCAGTTACCCTACTGGAAATATCACCGCCTAAAGCACCAATTACCCTACTGGAAATATCACCGCCTAAAGCACCAGT
>TU1765942
ACACAGACGTAAagacacacatgcgcgcacacagaCTGCAAGATGGGCGAGACAAGTCGTCACGCCTGAAAACAACACAAGGGTAACATCTCTGGCAAGTTTGGAGGTTTAGAGATGAGCCATTATGAGGTGGAGCCGTTCACCaacccaacacacaacacaattATATGGTATCCAAACTAGTGGCAGATTGACTCTTTCTTTCAGGGATCGTCATAAGTCACAGGTGAGGTCCTTGGGAACAAGGCTGCATGCAAGTTCATCAGAATTTGGgtgaataaaaaaaactattaggTAGAAGGATGTAATCGGGATCAAGAAGATGTCATTGGATGAACAGCCaaggaaacacagaaatatcacCACCTAAAGCACCAGTTACCCTACTGGAAATATCACCACCTAAAGCATCAGTTACCCTACTGGAAATATCACCACCTAAAGCACCAGTTACCCTACTGGAAATATCACCACCTAAAGCATCAGTTACCCTACTGGAAATATCACCACCTAAAGCACCAGTTACCCTACTGGAAATATCACCACCTAAAGCACCAGTTACCGTACTGGAAATATCACCACCTAAAGCACCATATAACCCTACTGGAAATATCACCACCTAAAGCACCAGTTACCGTACTGGAAATATCACCGCCTAAAGCACCAGTTACCCTACTGGAAAAATCACTGCCTAAAGCACCAGTTACCCTACTGGAAATATCACCGCCTAAAGCACCAATTACCCTACTGGAAATATCACCGCCTAAAGCACCAGT

Function

NR:

description
PREDICTED: zinc finger protein ZFAT-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037451.1 False 887 mRNA 0.44 4 35520123 35679900
TU1765941 False 1247 lncRNA 0.44 5 35519535 35679853
TU1765942 True 776 lncRNA 0.44 3 35519535 35522106

Neighbor

gene id symbol gene type direction distance location
LOC110496088 NA coding downstream 12784 35500146 ~ 35507339 (-)
LOC118941140 NA coding downstream 20442 35492995 ~ 35499681 (-)
LOC118941141 NA coding downstream 31606 35485826 ~ 35488517 (-)
LOC118941139 NA coding downstream 36788 35478658 ~ 35483335 (-)
LOC118941143 LOC106588245 coding downstream 44017 35471584 ~ 35476106 (-)
LOC110496097 LOC105009768 coding upstream 38055 35717955 ~ 35721190 (-)
LOC110496098 LOC106588247 coding upstream 61452 35741352 ~ 35808050 (-)
LOC110496099 LOC106588248 coding upstream 129066 35808966 ~ 35816670 (-)
LOC110496100 LOC106588520 coding upstream 191785 35871685 ~ 35882464 (-)
LOC110496102 LOC106570058 coding upstream 232105 35912005 ~ 35918139 (-)
G1543148 NA non-coding downstream 2187 35517139 ~ 35517936 (-)
G1543154 NA non-coding downstream 8138 35511472 ~ 35511985 (-)
G1543125 LOC106588245 non-coding downstream 18087 35478835 ~ 35502036 (-)
G1543133 NA non-coding downstream 19510 35492998 ~ 35500613 (-)
G1543163 NA non-coding downstream 28645 35484007 ~ 35491478 (-)
G1543265 NA non-coding upstream 72131 35752031 ~ 35752372 (-)
G1543285 NA non-coding upstream 163277 35843177 ~ 35843412 (-)
G1543288 NA non-coding upstream 180736 35860636 ~ 35860835 (-)
G1543291 NA non-coding upstream 189912 35869812 ~ 35870192 (-)
G1543297 NA non-coding upstream 205764 35885664 ~ 35885894 (-)
G1543128 LOC106588245 other downstream 15966 35452618 ~ 35504157 (-)
LOC110496085 NA other downstream 170461 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 340095 35151351 ~ 35203984 (-)
G1542988 sast other downstream 381569 35137637 ~ 35138554 (-)
G1543346 LOC106588513 other upstream 331087 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1621608 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2242255 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 2467690 38121576 ~ 38152320 (-)
G1546053 NA other upstream 2485350 38165250 ~ 38214049 (-)

Expression


Co-expression Network