LOC110496099 (LOC106588248)


Basic Information

Item Value
gene id LOC110496099
gene name LOC106588248
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35808966 ~ 35816670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571794.2
AGGTGcaatcaacaaggcaggttttgtcgcacctggactattGTTCAGTCATgttgtcaggtgccacaaaaagggactAAGGAAAATTGCATTTGGCTCAGAACagttggatgtacacagagagctactATTAATgtaaatctctcctggctcaaagtggaggaggtTGAATGCACAGAGCTGTCTGAACTACTGGCGCACAGCTCTGATACCCATGCTACAATAGGTGTCAAAATGGAGTTCGGTAATGTTATGTTGGATATAGAGCAGATCGTTCTGGGGGAAGAGGTGATGACCAGTAGCACAGCATCCATCATCAAACCACAGACTGTCCCTGCTCCCCAACCCTATCAGCATGACAGCGTACAGTGTTTTCAGTGCTTCATTACATTCTGTAATGCCAAGTCCAGGGAGAGACACATGAGGAAGAGCCATCGTGAGGAATACAAGCagtcgctccagcagACAGATACGCTGTTCACCTGTTATGTGTGCGATCGTACCttctcctcctctgaggagctgACGCAGCACCAGGCCTCACACAGCCTGGAAGACAAGCCCTTCTGCTGCACCCACTGCCAGGGAAGCTTCCGGACTTTCTCTGAGttgacagtccaCCGGCGACAGCTGTGCAAGGAGCGTCAGTGTGCGTGCAAGAACTGTGGCATGGTATTGCGGGGCCCAAACCAGTTACGCACCCACTGCCTCACCCAGCACCCCCAGCtgatggaagaggaggatgatgacACCAAGACTCATCGTTGTGGCAAGTGCGGCCGCAGGTTTGAGATGGAGGTGGAGCTTGTGCTGCACCAGGAAAACTTTGTGGGTCATCGGCATTGTGACGCAAAAGTCCCAGCCAAACAACGCGGACGCCCTCCCAAGAAAGTGTCTGTGGCTGAGCCAAAGTCTGCTGAGCGAGAGGCAGCTAATGGAGAGAAGAGTGGGAAAGCTGGCGATGGGGGAGAGGAGTTTGTGGCAAAAGGAGGGAAACGACCAGGTCTACCCCATAAGGAGGAGCTCCAAATTCCCTGTCCTAAAGCTGAGTGTGACCTCATGTTCTCCTCTGTTGCCCTTCTCCGGGCCCACAAGAAGGAGAAGCACAGGCGGCCACCTCCACCTCTCAAGACTCACCCCTGCTCTGAGTGTGAAGAGAGCTATACTCGACCGGAGCAGCTCAAAGCCCACATGGCCATGGCTCACGGCTACGGCCAACACAACTGCCCTACCTGCGGCAAGACCTTTGGCCGGGAGAGCAACCTAAAGGCACACCAGAAGACCCACACTGAGGGAGAGGCAACAGACAAATAAAATAGATAATCTGGGGAAAGGAGAATGTCATCATGGTCAATTTATGTAAtggttaaaggtgcaatatgcagaaattgcttaccattttctggttgctaaaattctaatagtttgcctaattttagTTTGTGATAAAACAAGCAATGTATAGAATAGATAATCattataccatctaaaccactgtgaaatatattgtcAGCTGTTTGAGACTGGTGTACAAACCCAAAAGTAAAAGCCACAAAATGAAACTTAAGGGAgtcatagaaatagcgcacatagaacatatctactgcttcttagacttgtttTCGATGAGTTGTTTGCTTTCTATAACTCATATTTCTATGTGGATTTGGTCGGGTTACCTAAAAAGTTTCATGCTGCAGCTTTTAAGGGTTGGAAAAATATAATTTGGTTAAAACAGGCATTGACGTGGGTGGGTTTTTTATGTTCAAGATGGGAGTTTGGAGTATGTGACATACCATTATGGATAAGCACTTGGTTGGATCATTAGCTTGTTCCTGGTTGCTCCCACGGATTATTTTGAAATGCTTTTAGAACCCTCTAATGATGTGTACATGATCGTGAATTTCAACTGCCAGCCCCCTTCCAGGGTAGGAATCTATTTCCATATTACCTCAAATGTGAGCAGATTTAGTAACTTATCATATTGATTTTAGTAGGAAATCAATGGGTTTTATGGTttgcattttagtcatttagcagatgcgcttatccagagcaacttacaggagcaattagggttaagttctttgctcaagggcacatcaacagatttgtcatctagtcagctcgggattcgacctttcagttactggcccatcgCTCTTAATCGCTGGGCAACCTACCGCCTTCAACATTCCACTCATCATTTAGTTTACGTTCCTGTCAAGGCATCTTCTGAtcatgtaaatgtatatatattggTCCGGAGAATATATTATTCTGTGAAGGATGTCGTTGTTGTGATATGATCTTGTACTTTTTTCATCCATAATTAAAGAGTAAGGAGTAATTTTTAAA
>XM_036952625.1
AATTCCGCGATGGCAAAGCCCGCCAGCCTTCCCAGCTAGCACGCTAAATCATAATTAAGTTCCCCAATCATTTGATCCACGGCGCATTTTTATTAAATTAGTTGTAGCTGGGTAGTTATTGAAACAAGTACCCAAAGGTTCACATTTGCTAGCTATTAGTTTCCAATTAACATTAAGGGTGGGTTCGTAAATTAACTCTGGCTATAAAGTCTGAGTGCCATAGCGCAGAATaattgatgaatttatgaacggCCAGagcgcactccagattgaatttacgaacacactgGACTGTGTGTGGACCTCAATTCGTcgttcaatcacccacgtgggtatgtGCTCCTTAACACCAATGAGGTGTCAAAATGGAGTTCGGTAATGTTATGTTGGATATAGAGCAGATCGTTCTGGGGGAAGAGGTGATGACCAGTAGCACAGCATCCATCATCAAACCACAGACTGTCCCTGCTCCCCAACCCTATCAGCATGACAGCGTACAGTGTTTTCAGTGCTTCATTACATTCTGTAATGCCAAGTCCAGGGAGAGACACATGAGGAAGAGCCATCGTGAGGAATACAAGCagtcgctccagcagACAGATACGCTGTTCACCTGTTATGTGTGCGATCGTACCttctcctcctctgaggagctgACGCAGCACCAGGCCTCACACAGCCTGGAAGACAAGCCCTTCTGCTGCACCCACTGCCAGGGAAGCTTCCGGACTTTCTCTGAGttgacagtccaCCGGCGACAGCTGTGCAAGGAGCGTCAGTGTGCGTGCAAGAACTGTGGCATGGTATTGCGGGGCCCAAACCAGTTACGCACCCACTGCCTCACCCAGCACCCCCAGCtgatggaagaggaggatgatgacACCAAGACTCATCGTTGTGGCAAGTGCGGCCGCAGGTTTGAGATGGAGGTGGAGCTTGTGCTGCACCAGGAAAACTTTGTGGGTCATCGGCATTGTGACGCAAAAGTCCCAGCCAAACAACGCGGACGCCCTCCCAAGAAAGTGTCTGTGGCTGAGCCAAAGTCTGCTGAGCGAGAGGCAGCTAATGGAGAGAAGAGTGGGAAAGCTGGCGATGGGGGAGAGGAGTTTGTGGCAAAAGGAGGGAAACGACCAGGTCTACCCCATAAGGAGGAGCTCCAAATTCCCTGTCCTAAAGCTGAGTGTGACCTCATGTTCTCCTCTGTTGCCCTTCTCCGGGCCCACAAGAAGGAGAAGCACAGGCGGCCACCTCCACCTCTCAAGACTCACCCCTGCTCTGAGTGTGAAGAGAGCTATACTCGACCGGAGCAGCTCAAAGCCCACATGGCCATGGCTCACGGCTACGGCCAACACAACTGCCCTACCTGCGGCAAGACCTTTGGCCGGGAGAGCAACCTAAAGGCACACCAGAAGACCCACACTGAGGGAGAGGCAACAGACAAATAAAATAGATAATCTGGGGAAAGGAGAATGTCATCATGGTCAATTTATGTAAtggttaaaggtgcaatatgcagaaattgcttaccattttctggttgctaaaattctaatagtttgcctaattttagTTTGTGATAAAACAAGCAATGTATAGAATAGATAATCattataccatctaaaccactgtgaaatatattgtcAGCTGTTTGAGACTGGTGTACAAACCCAAAAGTAAAAGCCACAAAATGAAACTTAAGGGAgtcatagaaatagcgcacatagaacatatctactgcttcttagacttgtttTCGATGAGTTGTTTGCTTTCTATAACTCATATTTCTATGTGGATTTGGTCGGGTTACCTAAAAAGTTTCATGCTGCAGCTTTTAAGGGTTGGAAAAATATAATTTGGTTAAAACAGGCATTGACGTGGGTGGGTTTTTTATGTTCAAGATGGGAGTTTGGAGTATGTGACATACCATTATGGATAAGCACTTGGTTGGATCATTAGCTTGTTCCTGGTTGCTCCCACGGATTATTTTGAAATGCTTTTAGAACCCTCTAATGATGTGTACATGATCGTGAATTTCAACTGCCAGCCCCCTTCCAGGGTAGGAATCTATTTCCATATTACCTCAAATGTGAGCAGATTTAGTAACTTATCATATTGATTTTAGTAGGAAATCAATGGGTTTTATGGTttgcattttagtcatttagcagatgcgcttatccagagcaacttacaggagcaattagggttaagttctttgctcaagggcacatcaacagatttgtcatctagtcagctcgggattcgacctttcagttactggcccatcgCTCTTAATCGCTGGGCAACCTACCGCCTTCAACATTCCACTCATCATTTAGTTTACGTTCCTGTCAAGGCATCTTCTGAtcatgtaaatgtatatatattggTCCGGAGAATATATTATTCTGTGAAGGATGTCGTTGTTGTGATATGATCTTGTACTTTTTTCATCCATAATTAAAGAGTAAGGAGTAATTTTTAAA
>XM_036952624.1
GGTTGTAGCTCGTTATAAGTATAcatttgtacatttatttttaccTCGGCTTTTCATGTTCATTCccaaattatttaaaaaacacTTTCATGAACACCTAAGACAACATAATACTATTTTAGCATGGTCTCGGAAAATGTCTACTatcttatttttttccccctcgcgTTTGTTTTGTCTGCATTGCTTGACTACAGTTTTAGGTGTCAAAATGGAGTTCGGTAATGTTATGTTGGATATAGAGCAGATCGTTCTGGGGGAAGAGGTGATGACCAGTAGCACAGCATCCATCATCAAACCACAGACTGTCCCTGCTCCCCAACCCTATCAGCATGACAGCGTACAGTGTTTTCAGTGCTTCATTACATTCTGTAATGCCAAGTCCAGGGAGAGACACATGAGGAAGAGCCATCGTGAGGAATACAAGCagtcgctccagcagACAGATACGCTGTTCACCTGTTATGTGTGCGATCGTACCttctcctcctctgaggagctgACGCAGCACCAGGCCTCACACAGCCTGGAAGACAAGCCCTTCTGCTGCACCCACTGCCAGGGAAGCTTCCGGACTTTCTCTGAGttgacagtccaCCGGCGACAGCTGTGCAAGGAGCGTCAGTGTGCGTGCAAGAACTGTGGCATGGTATTGCGGGGCCCAAACCAGTTACGCACCCACTGCCTCACCCAGCACCCCCAGCtgatggaagaggaggatgatgacACCAAGACTCATCGTTGTGGCAAGTGCGGCCGCAGGTTTGAGATGGAGGTGGAGCTTGTGCTGCACCAGGAAAACTTTGTGGGTCATCGGCATTGTGACGCAAAAGTCCCAGCCAAACAACGCGGACGCCCTCCCAAGAAAGTGTCTGTGGCTGAGCCAAAGTCTGCTGAGCGAGAGGCAGCTAATGGAGAGAAGAGTGGGAAAGCTGGCGATGGGGGAGAGGAGTTTGTGGCAAAAGGAGGGAAACGACCAGGTCTACCCCATAAGGAGGAGCTCCAAATTCCCTGTCCTAAAGCTGAGTGTGACCTCATGTTCTCCTCTGTTGCCCTTCTCCGGGCCCACAAGAAGGAGAAGCACAGGCGGCCACCTCCACCTCTCAAGACTCACCCCTGCTCTGAGTGTGAAGAGAGCTATACTCGACCGGAGCAGCTCAAAGCCCACATGGCCATGGCTCACGGCTACGGCCAACACAACTGCCCTACCTGCGGCAAGACCTTTGGCCGGGAGAGCAACCTAAAGGCACACCAGAAGACCCACACTGAGGGAGAGGCAACAGACAAATAAAATAGATAATCTGGGGAAAGGAGAATGTCATCATGGTCAATTTATGTAAtggttaaaggtgcaatatgcagaaattgcttaccattttctggttgctaaaattctaatagtttgcctaattttagTTTGTGATAAAACAAGCAATGTATAGAATAGATAATCattataccatctaaaccactgtgaaatatattgtcAGCTGTTTGAGACTGGTGTACAAACCCAAAAGTAAAAGCCACAAAATGAAACTTAAGGGAgtcatagaaatagcgcacatagaacatatctactgcttcttagacttgtttTCGATGAGTTGTTTGCTTTCTATAACTCATATTTCTATGTGGATTTGGTCGGGTTACCTAAAAAGTTTCATGCTGCAGCTTTTAAGGGTTGGAAAAATATAATTTGGTTAAAACAGGCATTGACGTGGGTGGGTTTTTTATGTTCAAGATGGGAGTTTGGAGTATGTGACATACCATTATGGATAAGCACTTGGTTGGATCATTAGCTTGTTCCTGGTTGCTCCCACGGATTATTTTGAAATGCTTTTAGAACCCTCTAATGATGTGTACATGATCGTGAATTTCAACTGCCAGCCCCCTTCCAGGGTAGGAATCTATTTCCATATTACCTCAAATGTGAGCAGATTTAGTAACTTATCATATTGATTTTAGTAGGAAATCAATGGGTTTTATGGTttgcattttagtcatttagcagatgcgcttatccagagcaacttacaggagcaattagggttaagttctttgctcaagggcacatcaacagatttgtcatctagtcagctcgggattcgacctttcagttactggcccatcgCTCTTAATCGCTGGGCAACCTACCGCCTTCAACATTCCACTCATCATTTAGTTTACGTTCCTGTCAAGGCATCTTCTGAtcatgtaaatgtatatatattggTCCGGAGAATATATTATTCTGTGAAGGATGTCGTTGTTGTGATATGATCTTGTACTTTTTTCATCCATAATTAAAGAGTAAGGAGTAATTTTTAAA
>XM_021571793.2
ATACAGGAAAGCACTTTTATTCTGAAGGATTCCAAAAATCCGTGACCTGGAAGTACTTCACAGCAGTGCATCGTTGGATACTTTCAAAGGTGTCAAAATGGAGTTCGGTAATGTTATGTTGGATATAGAGCAGATCGTTCTGGGGGAAGAGGTGATGACCAGTAGCACAGCATCCATCATCAAACCACAGACTGTCCCTGCTCCCCAACCCTATCAGCATGACAGCGTACAGTGTTTTCAGTGCTTCATTACATTCTGTAATGCCAAGTCCAGGGAGAGACACATGAGGAAGAGCCATCGTGAGGAATACAAGCagtcgctccagcagACAGATACGCTGTTCACCTGTTATGTGTGCGATCGTACCttctcctcctctgaggagctgACGCAGCACCAGGCCTCACACAGCCTGGAAGACAAGCCCTTCTGCTGCACCCACTGCCAGGGAAGCTTCCGGACTTTCTCTGAGttgacagtccaCCGGCGACAGCTGTGCAAGGAGCGTCAGTGTGCGTGCAAGAACTGTGGCATGGTATTGCGGGGCCCAAACCAGTTACGCACCCACTGCCTCACCCAGCACCCCCAGCtgatggaagaggaggatgatgacACCAAGACTCATCGTTGTGGCAAGTGCGGCCGCAGGTTTGAGATGGAGGTGGAGCTTGTGCTGCACCAGGAAAACTTTGTGGGTCATCGGCATTGTGACGCAAAAGTCCCAGCCAAACAACGCGGACGCCCTCCCAAGAAAGTGTCTGTGGCTGAGCCAAAGTCTGCTGAGCGAGAGGCAGCTAATGGAGAGAAGAGTGGGAAAGCTGGCGATGGGGGAGAGGAGTTTGTGGCAAAAGGAGGGAAACGACCAGGTCTACCCCATAAGGAGGAGCTCCAAATTCCCTGTCCTAAAGCTGAGTGTGACCTCATGTTCTCCTCTGTTGCCCTTCTCCGGGCCCACAAGAAGGAGAAGCACAGGCGGCCACCTCCACCTCTCAAGACTCACCCCTGCTCTGAGTGTGAAGAGAGCTATACTCGACCGGAGCAGCTCAAAGCCCACATGGCCATGGCTCACGGCTACGGCCAACACAACTGCCCTACCTGCGGCAAGACCTTTGGCCGGGAGAGCAACCTAAAGGCACACCAGAAGACCCACACTGAGGGAGAGGCAACAGACAAATAAAATAGATAATCTGGGGAAAGGAGAATGTCATCATGGTCAATTTATGTAAtggttaaaggtgcaatatgcagaaattgcttaccattttctggttgctaaaattctaatagtttgcctaattttagTTTGTGATAAAACAAGCAATGTATAGAATAGATAATCattataccatctaaaccactgtgaaatatattgtcAGCTGTTTGAGACTGGTGTACAAACCCAAAAGTAAAAGCCACAAAATGAAACTTAAGGGAgtcatagaaatagcgcacatagaacatatctactgcttcttagacttgtttTCGATGAGTTGTTTGCTTTCTATAACTCATATTTCTATGTGGATTTGGTCGGGTTACCTAAAAAGTTTCATGCTGCAGCTTTTAAGGGTTGGAAAAATATAATTTGGTTAAAACAGGCATTGACGTGGGTGGGTTTTTTATGTTCAAGATGGGAGTTTGGAGTATGTGACATACCATTATGGATAAGCACTTGGTTGGATCATTAGCTTGTTCCTGGTTGCTCCCACGGATTATTTTGAAATGCTTTTAGAACCCTCTAATGATGTGTACATGATCGTGAATTTCAACTGCCAGCCCCCTTCCAGGGTAGGAATCTATTTCCATATTACCTCAAATGTGAGCAGATTTAGTAACTTATCATATTGATTTTAGTAGGAAATCAATGGGTTTTATGGTttgcattttagtcatttagcagatgcgcttatccagagcaacttacaggagcaattagggttaagttctttgctcaagggcacatcaacagatttgtcatctagtcagctcgggattcgacctttcagttactggcccatcgCTCTTAATCGCTGGGCAACCTACCGCCTTCAACATTCCACTCATCATTTAGTTTACGTTCCTGTCAAGGCATCTTCTGAtcatgtaaatgtatatatattggTCCGGAGAATATATTATTCTGTGAAGGATGTCGTTGTTGTGATATGATCTTGTACTTTTTTCATCCATAATTAAAGAGTAAGGAGTAATTTTTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571794.2 False 2358 mRNA 0.46 5 35808966 35815792
XM_036952625.1 False 2489 mRNA 0.45 5 35808966 35816244
XM_036952624.1 False 2335 mRNA 0.45 5 35808966 35816572
XM_021571793.2 True 2221 mRNA 0.46 5 35808966 35816670

Neighbor

gene id symbol gene type direction distance location
LOC110496098 LOC106588247 coding downstream 916 35741352 ~ 35808050 (-)
LOC110496097 LOC105009768 coding downstream 87776 35717955 ~ 35721190 (-)
LOC118941150 NA coding downstream 129066 35519535 ~ 35679900 (-)
LOC110496088 NA coding downstream 301627 35500146 ~ 35507339 (-)
LOC118941140 NA coding downstream 309285 35492995 ~ 35499681 (-)
LOC110496100 LOC106588520 coding upstream 55015 35871685 ~ 35882464 (-)
LOC110496102 LOC106570058 coding upstream 95335 35912005 ~ 35918139 (-)
LOC110496103 LOC106588514 coding upstream 101623 35918293 ~ 35971717 (-)
LOC110496104 LOC106588515 coding upstream 158623 35975293 ~ 35980948 (-)
LOC110496109 LOC106588511 coding upstream 255025 36068180 ~ 36077299 (-)
G1543265 NA non-coding downstream 56594 35752031 ~ 35752372 (-)
G1543148 NA non-coding downstream 291030 35517139 ~ 35517936 (-)
G1543154 NA non-coding downstream 296981 35511472 ~ 35511985 (-)
G1543133 NA non-coding downstream 308353 35492998 ~ 35500613 (-)
G1543285 NA non-coding upstream 26507 35843177 ~ 35843412 (-)
G1543288 NA non-coding upstream 43966 35860636 ~ 35860835 (-)
G1543291 NA non-coding upstream 53142 35869812 ~ 35870192 (-)
G1543297 NA non-coding upstream 68994 35885664 ~ 35885894 (-)
G1543321 NA non-coding upstream 155088 35971758 ~ 35972855 (-)
G1543128 LOC106588245 other downstream 304809 35452618 ~ 35504157 (-)
LOC110496085 NA other downstream 459304 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 628938 35151351 ~ 35203984 (-)
G1542988 sast other downstream 670412 35137637 ~ 35138554 (-)
G1543346 LOC106588513 other upstream 194317 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1484838 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2105485 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 2330920 38121576 ~ 38152320 (-)
G1546053 NA other upstream 2348580 38165250 ~ 38214049 (-)

Expression


Co-expression Network