LOC110496100 (LOC106588520)


Basic Information

Item Value
gene id LOC110496100
gene name LOC106588520
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35871685 ~ 35882464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571795.2
ATCTCAGTCATATGACCGCGGTGTTTAGGGTTTCATTGAGTGTGGCTGTTGCGGCCTGCGCTACTAAGGAAGTTAGACGTTACTTTTTGACGAAAATGTGTCAGTTTGTaactttcacgaggttggagcAATAAAATGTTCGACTTACTTAAGACGTTTCGAATCTAGGTTCACGGTATTCTCGTCTCTGGTTTTAGAAACTCTGTGGTTCTACAGTGTAGCAATTGTTTTGCCTTCATTCCACAGTATCACAACTTTCTTTGTCAAAGAGCCGAGAGAATACGGAACTGAGTTACCAGCATGGTTGCAACGGCTGGTTTGATGGGGCTACAAAGCCGACTCGCAGTGCTTTTCTCGGTTGTGCTATCTCCGTGTCTATGCACCGCTCTTGTCCAGaTTAAACCCCTGGTTTATGATGAGCAGTTGCTGTGGGTGAGTGGCGGGGCAGGGGAGGTGGGCACCTACCGGATCCCACTGCTCTCCTTTACCCCCAAGGGCAGTCTGCTGGCCTTCGCTGAGGCCCGGAAGAACTCTGCCAATGATGTGGGGGCCAAGTTCCTTGCCATGCGACGCTCCACAGACCGAGGTGCCACGTGGTCTCCCACCTCCTTCATATTGGATGATGGCTACTTGGTTGACGGGCTGAACCTGGGTTCTGTGGTGGTGGATGAGGAGACTGGCTCTGTGCTGCTGATCTACTCGATGTGCTTCCACCAGTACCAGTGTGACCCTGCCAGTATTATGTTGGTGGAGAGCATGGATGACGGTCTCAGCTGGAGCCCACCAAGGAACCTCTCGGTCCAGCTAGGGGTTAAGAACTTTGCCCCCGGGCCTGGCTTTGGCATTCAGAAGCACTACCCTCCTGCCAAGGGGCGCCTGGTGGTGTGTGGACATGGCACACTGGAGGGTGACGGGGTCTTCTGTATTCTGAGTGACGATCACGGGCGAAACTGGAAGAATGGTGCCGCACTGAAGAGTATCCCCTACAACCAGCCCAAACAAGCCCTGGACTTCAACCCAGACGAGTGCCAGCCTGTAGAGATGGAGGACGGTAGCATCGTCATCAACGTGCGCAACCAGAACAACTACCACTGCCGCTGCCGCATGGTGGTGCGCAGCCTGGACGGGGGTGAGACTCTACCTGTGGAGCAGCTGGTGTTTGACCCCATCCTGATAGACCCAACGGTAGCAGCAGGGGCGCTGCAGAAGGAGGGCGTGATGTACTTCACCAACCCAGCTGACAGTACCCACAGGATCAATCTAACCCTGCGCTGGTCTCTGACCAATGGCACATCGTGGGAGAAGAACACTGTGCAGATCTGGGCGGGCCCAAGTGGCTACTCCTGCATGACGTCACTTACGAGCGGCAGCGCAGAGGACAGGAAGTTCATCTTTGTCATCTACGAGAAAGGCCACAAAGACTACGATGAGACCATCTCCTTCGCCAAGATCCACCTCTACGGTGGATGGTAGTAGAATAAGGCTGGGGTGGGGGACTAGGTAGAGTCTGCCTCTAACCACTGGTCCAAGGTCTGTGTTCTTAGTGTCTTGGTGTGCTGAACTAGcatcagtttagccttttttttagatcataatgaattagATTATatagatcctagatcagcattttTACTCAGATACTTTTTGAATACAGGCCCAGATATTTTTATCCTCTTaagtggttatggttaggttgGATTTTTATCCAAGATCTGTGGTTAGGAGCAGGTTCTACCTCCAGCCGGGGAGGGAAAGGGAAGAGGATGTTGAAGATTCTCTCAGGACGGAGGACTCATGGGACTTTGCAGCACCACTTTGTTTTGATTGGTGGAGGGAGACATACAAACTACTCCTGTTTTTATTGTACCAATAATGACAGTTGTGTGCCACTTTATCCTAAGGTGGGCTTTTAAATATATCAGGGTTGGTTTCATTAGGGCACACATTAGGGCAAAAACATTCTGCAACAGGAAATGGGAAGTTCAgctagtccctccctgttttagtctgttttcctccatttggtgcctaatatACATGTTATTAGTATGGTCCAAGCACAGGTGTCCTGTCCTTTACTGAAGATATGATAGTCTGTAATAATTGGTGGGATGTTGGTGTAGCTACGCTTCCTTTCTGTTGAGGCTCCTATagctgagaggggggggggggggggggggagtttgcCCCCCCccggtccacacacacacacacacacacatcacaaaatAAAAGAGATGGGTGGAAGGCAAATATTTAGAGGGTTATGTGTCACCAAGCCATAAAAATATTGGGAAAGACTTGCAACTGCTATTTCCATATGGCAAAAAAAGGTAAAAATACAGCTTTAGACATTTTAATGCCTAGTAAATGCAGCTCCCAGCCCTCTGCCTCCCAGTCCATAACAGAATGGTTGCACTTTAACAATGTCAAGGAATTTTTTACGGTTTCCTTTTTTTGAAGGATGGTTCTTGCCAACTTTTGACGTGAGAGATGTTTGTATGATGAGACCGTTTTATGTGAGTGAATTGACTCGTAAAATGATTGACTCAATAGGACATGTATAGTTTGAATACCATCAACTTGATGTTGTTTTTACGAGGCATGGCGCCAGGGATCTGTCATTTCATTCACCCATTTGGTGCTATAAGTTGAAAGTATAATAATCAACTGTGATTGTGTCACAAATACTTCAACTCAGTGTTGCTGTAGCAGATTTGATCAGTCTCATCTAGCTAGCGCACTCCACAGCAGATGTAGTTTTCCTCAGTTCACCTTCCTGAACCCTTCTGTGAAGCTGACATACTGATATGAAATAGATTCCTTGTTTAGTGGTAAGACACTGCATCTGGTTAATTGCACATAAGGATTTGATTGGTCATTTATTCGAAAGTGATTTTGGTTAGAAACTGTTGCCTTGTATTGAGGAATCTGGATGCATGTGAACTCATTGTGTCAAGTTGAATTGCCAATGTTATGGTCTTTTAAGTGCACTTGATTTTGTATTATATTTAGCATATATTCTTCTCTTACTGTAAGCTAATTCTCTATCTTACACCCTTTATTATCCTCCCTTTCCTGAAAGTGTGTACATTTAATAGAAGGGCTTCCTATGTTGATGACCTTTTAAGATTTGTGGTTTTAATATTTCAGGTAAGATTTTCTGATAGTGTTTAaaggaggtgtgatgtgtgtctgagtattaatataatatatatacgtTTAGATACTGTACAATTTGTGGAAAATATGTGAACTGAGCAGCAATTGAGCCACACTGTGTGGAAACATACTGTTAAAATTGTTCCAGATATTACAATTGTATTAAGCCTCTTGTAATGTTTTGGGATATCCCCTGGGTCTGTAGATTATGTAAAGTATCCTGTACTTCCCTGAAAAGTATgtgaaatattatttttgttagcCACGCCCTGTTTCATGCTGTGTGGGTGAACATTAGATTCAAATGGAGATTTTGGAACAAAGAAATCGTACACAAATGTACACTGTAAGACAAAATGTAAGATGTGGCTGTAAGAGAAGGTTAGAAAAGAGAATAATGCAGATATCCTTAACTATTTTGTTTGTCACACTTATAGAAGTAATATAAATATTTTTCTTTATGATAGTGTTGCCAGAATCTTATAGTAGAATCACAGTgtcttctaaaatgtattatgtgTTAGGCATTAAAGCCAAATTTATAATGGGGAGTGAACAAAATTCATAATTATTGAAGATACTAAATAAAACTAGCATTCATAGA

Function

NR:

description
sialidase-1

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K01186 NEU1; sialidase-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571795.2 True 3766 mRNA 0.44 6 35871685 35882464

Neighbor

gene id symbol gene type direction distance location
LOC110496099 LOC106588248 coding downstream 55015 35808966 ~ 35816670 (-)
LOC110496098 LOC106588247 coding downstream 63635 35741352 ~ 35808050 (-)
LOC110496097 LOC105009768 coding downstream 150495 35717955 ~ 35721190 (-)
LOC118941150 NA coding downstream 191785 35519535 ~ 35679900 (-)
LOC110496088 NA coding downstream 364346 35500146 ~ 35507339 (-)
LOC110496102 LOC106570058 coding upstream 29541 35912005 ~ 35918139 (-)
LOC110496103 LOC106588514 coding upstream 35829 35918293 ~ 35971717 (-)
LOC110496104 LOC106588515 coding upstream 92829 35975293 ~ 35980948 (-)
LOC110496109 LOC106588511 coding upstream 189231 36068180 ~ 36077299 (-)
LOC110496110 LOC106588509 coding upstream 201670 36084134 ~ 36100917 (-)
G1543291 NA non-coding downstream 1493 35869812 ~ 35870192 (-)
G1543288 NA non-coding downstream 10850 35860636 ~ 35860835 (-)
G1543285 NA non-coding downstream 28273 35843177 ~ 35843412 (-)
G1543265 NA non-coding downstream 119313 35752031 ~ 35752372 (-)
G1543297 NA non-coding upstream 3200 35885664 ~ 35885894 (-)
G1543321 NA non-coding upstream 89294 35971758 ~ 35972855 (-)
G1543343 NA non-coding upstream 125173 36007637 ~ 36034838 (-)
G1543360 NA non-coding upstream 155585 36038049 ~ 36038260 (-)
G1543363 NA non-coding upstream 158670 36041134 ~ 36041539 (-)
G1543128 LOC106588245 other downstream 367528 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 374703 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 522023 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 691657 35151351 ~ 35203984 (-)
G1542988 sast other downstream 733131 35137637 ~ 35138554 (-)
G1543346 LOC106588513 other upstream 128523 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1419044 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2039691 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 2265126 38121576 ~ 38152320 (-)
G1546053 NA other upstream 2282786 38165250 ~ 38214049 (-)

Expression


Co-expression Network