LOC110496101 (LOC106588519)


Basic Information

Item Value
gene id LOC110496101
gene name LOC106588519
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35889566 ~ 35908363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952626.1
CCTGTGGGGCAAGAGTTAATGTGTGACAGTCCCAGCCCATAGCAGCAGACCACCAGACCAGAGTCATGACAACCTGCAGAACATCTGCTAAACTCACTGGCATCCAGATCAACTCACACACCAGCTGGGACAACAACGCTAAGAGTTTGTAGCTGTTGAAAGCAGAGCGATAACTTGGCTGTGTATTGTGCGTTGAAGACTGACCCTGTTGAGGGTCTCGTCATCATGGATGAGATGGAGGACAAGACTTCTGTGCATTCAGACGAGAGTGATGTTGAAGCTGACCTAAGACGATCATCCAAGATCCAGCCAGAAAACAGAAGAACATCTAGATGGAAGAATGGTCAGTGTGTGCTGGCAGTACCAACCTCCTCCATGCTGAGCCCCAGGTTTGATCTGTCGCTCTGCAGGGCTCTGCTGGAGAGGGACGGCTTTCAGATTCCTGTGGAAGACTTTGAGACACCACTAGACATAGCACTGGATGTGCCATCGGTCAGGAGATACCTGTTCCTTAACTCTTCTCTCATCCACTTCATCATGGCACCGATTATATATGTGGTGATATGGTGTGCTGTGTTCTCCACTCTTCATATGTATCTCTCGGTCACTGACTACTGGgtcctctgcctgtctgtcagtctggtcGCCATCTTCCTCACCACATTCATCATCGTCATCCTCTACTATAGTAACAAGGAGATAAACATCAACATTGACGTGCGACTCATCCAGGTGAATGAGAGGCTGAGCCAACATATGCTGCTGGTGGGCGTGGCTGACTGGGTGCAGAACTGCACTGGAACTCTACAGCTGTTCATTGTGTACTGGGATACAGCCCGCTGCTTGAGGACACTGACTGAAACTCTAGAGGAGATGAGCTTTGTCGGAGACGAGGCCCAGAAGAGACTCGAGAAGAGAATGTCCCACCTTGTCCTGGTGTCAGAGGTCATGACCCTTGACCCTGTGGCGGTGGAGTCAAGTGTTAATGAAGGTTCTGATGAGGAAAGGCCCCTCTTGATGAACGATGAGGCTGGAGGCAGTACCTCAACCAGCCAGAGGGAGGACACCAAACTCACTACTAACTACATTTTGGTACCGGACCAAATACTACCAGCTCAGGCCAAAGCACTCCAACTTCTACTGACCTACGGTGCGGTGTATGTCAAGCTGTTGCTATCTGAAAAGCTGCCAAACTCCACACACCACCCCCTACACCACAGGAGGAATCACTGCACCACTGCCTCCCTTTGTCTCTGTCAGTATATAAAAACCAAGGTCCTAGGATTATAAGACTGGGACACTGAAACGCTGATGCGTTCCACTTTAAATAATATGTTACTGTAGGACAATAGAATATTTGCACTGACAATATAAAAGTCACGATTTAGTACCCACTTGTGTACGTTTTGCATTAAATTATACAAACAATAAATGTATATCTTTAAGAGGTTTGTCCTTATGTAGACAGGGATATTAATTTACGGTACATGCTAAGACATTTTGGGAGTGCATTTAGATAAACAGGGCAAAgtatgaataagaatatgttcttaactgacttgtctagttaaataaatacaaataaaaagg
>XM_036952627.1
CAGACCACCAGACCAGAGTCATGACAACCTGCAGAACATCTGCTAAACTCACTGGCATCCAGATCAACTCACACACCAGCTGGGACAACAACGCTAAGGTAGAGTTTGTAGCTGTTGAAAGCAGAGCGATAACTTGGCTGTGTATTGTGCGTTGAAGACTGACCCTGTTGAGGGTCTCGTCATCATGGATGAGATGGAGGACAAGACTTCTGTGCATTCAGACGAGAGTGATGTTGAAGCTGACCTAAGACGATCATCCAAGATCCAGCCAGAAAACAGAAGAACATCTAGATGGAAGAATGGTCAGTGTGTGCTGGCAGTACCAACCTCCTCCATGCTGAGCCCCAGGTTTGATCTGTCGCTCTGCAGGGCTCTGCTGGAGAGGGACGGCTTTCAGATTCCTGTGGAAGACTTTGAGACACCACTAGACATAGCACTGGATGTGCCATCGGTCAGGAGATACCTGTTCCTTAACTCTTCTCTCATCCACTTCATCATGGCACCGATTATATATGTGGTGATATGGTGTGCTGTGTTCTCCACTCTTCATATGTATCTCTCGGTCACTGACTACTGGgtcctctgcctgtctgtcagtctggtcGCCATCTTCCTCACCACATTCATCATCGTCATCCTCTACTATAGTAACAAGGAGATAAACATCAACATTGACGTGCGACTCATCCAGGTGAATGAGAGGCTGAGCCAACATATGCTGCTGGTGGGCGTGGCTGACTGGGTGCAGAACTGCACTGGAACTCTACAGCTGTTCATTGTGTACTGGGATACAGCCCGCTGCTTGAGGACACTGACTGAAACTCTAGAGGAGATGAGCTTTGTCGGAGACGAGGCCCAGAAGAGACTCGAGAAGAGAATGTCCCACCTTGTCCTGGTGTCAGAGGTCATGACCCTTGACCCTGTGGCGGTGGAGTCAAGTGTTAATGAAGGTTCTGATGAGGAAAGGCCCCTCTTGATGAACGATGAGGCTGGAGGCAGTACCTCAACCAGCCAGAGGGAGGACACCAAACTCACTACTAACTACATTTTGGTACCGGACCAAATACTACCAGCTCAGGCCAAAGCACTCCAACTTCTACTGACCTACGGTGCGGTGTATGTCAAGCTGTTGCTATCTGAAAAGCTGCCAAACTCCACACACCACCCCCTACACCACAGGAGGAATCACTGCACCACTGCCTCCCTTTGTCTCTGTCAGTATATAAAAACCAAGGTCCTAGGATTATAAGACTGGGACACTGAAACGCTGATGCGTTCCACTTTAAATAATATGTTACTGTAGGACAATAGAATATTTGCACTGACAATATAAAAGTCACGATTTAGTACCCACTTGTGTACGTTTTGCATTAAATTATACAAACAATAAATGTATATCTTTAAGAGGTTTGTCCTTATGTAGACAGGGATATTAATTTACGGTACATGCTAAGACATTTTGGGAGTGCATTTAGATAAACAGGGCAAAgtatgaataagaatatgttcttaactgacttgtctagttaaataaatacaaataaaaagg
>XM_036952628.1
CTCTTTTAGTCAttgtaggagttggcaagacagcaaaaacagatctgggaccaggctaacggAACTGTGTTGCTGTGGTCAGATGCACTGTGTATTTCACGCTGACGGGTCTCGTCATCATGGATGAGATGGAGGACAAGACTTCTGTGCATTCAGACGAGAGTGATGTTGAAGCTGACCTAAGACGATCATCCAAGATCCAGCCAGAAAACAGAAGAACATCTAGATGGAAGAATGGTCAGTGTGTGCTGGCAGTACCAACCTCCTCCATGCTGAGCCCCAGGTTTGATCTGTCGCTCTGCAGGGCTCTGCTGGAGAGGGACGGCTTTCAGATTCCTGTGGAAGACTTTGAGACACCACTAGACATAGCACTGGATGTGCCATCGGTCAGGAGATACCTGTTCCTTAACTCTTCTCTCATCCACTTCATCATGGCACCGATTATATATGTGGTGATATGGTGTGCTGTGTTCTCCACTCTTCATATGTATCTCTCGGTCACTGACTACTGGgtcctctgcctgtctgtcagtctggtcGCCATCTTCCTCACCACATTCATCATCGTCATCCTCTACTATAGTAACAAGGAGATAAACATCAACATTGACGTGCGACTCATCCAGGTGAATGAGAGGCTGAGCCAACATATGCTGCTGGTGGGCGTGGCTGACTGGGTGCAGAACTGCACTGGAACTCTACAGCTGTTCATTGTGTACTGGGATACAGCCCGCTGCTTGAGGACACTGACTGAAACTCTAGAGGAGATGAGCTTTGTCGGAGACGAGGCCCAGAAGAGACTCGAGAAGAGAATGTCCCACCTTGTCCTGGTGTCAGAGGTCATGACCCTTGACCCTGTGGCGGTGGAGTCAAGTGTTAATGAAGGTTCTGATGAGGAAAGGCCCCTCTTGATGAACGATGAGGCTGGAGGCAGTACCTCAACCAGCCAGAGGGAGGACACCAAACTCACTACTAACTACATTTTGGTACCGGACCAAATACTACCAGCTCAGGCCAAAGCACTCCAACTTCTACTGACCTACGGTGCGGTGTATGTCAAGCTGTTGCTATCTGAAAAGCTGCCAAACTCCACACACCACCCCCTACACCACAGGAGGAATCACTGCACCACTGCCTCCCTTTGTCTCTGTCAGTATATAAAAACCAAGGTCCTAGGATTATAAGACTGGGACACTGAAACGCTGATGCGTTCCACTTTAAATAATATGTTACTGTAGGACAATAGAATATTTGCACTGACAATATAAAAGTCACGATTTAGTACCCACTTGTGTACGTTTTGCATTAAATTATACAAACAATAAATGTATATCTTTAAGAGGTTTGTCCTTATGTAGACAGGGATATTAATTTACGGTACATGCTAAGACATTTTGGGAGTGCATTTAGATAAACAGGGCAAAgtatgaataagaatatgttcttaactgacttgtctagttaaataaatacaaataaaaagg

Function

NR:

description
transmembrane protein 268-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952626.1 False 1590 mRNA 0.47 10 35889566 35908363
XM_036952627.1 False 1549 mRNA 0.46 10 35889611 35908363
XM_036952628.1 True 1484 mRNA 0.46 9 35895380 35908363

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 384930 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 455625 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 541271 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 564902 35237754 ~ 35324664 (+)
olah sast coding upstream 749732 35131761 ~ 35139834 (+)
LOC110496105 LOC106588516 coding downstream 62694 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 90836 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 115530 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 173746 36076661 ~ 36091606 (+)
LOC110496805 LOC106588507 coding downstream 239340 36147703 ~ 36158391 (+)
G1542296 NA non-coding upstream 1058 35888294 ~ 35888508 (+)
G1542295 NA non-coding upstream 2156 35887160 ~ 35887410 (+)
G1542283 NA non-coding upstream 15378 35871601 ~ 35874188 (+)
G1542281 NA non-coding upstream 20578 35868787 ~ 35868988 (+)
G1542280 NA non-coding upstream 21165 35868201 ~ 35868401 (+)
G1542292 LOC106573797 non-coding downstream 790 35909153 ~ 35940375 (+)
G1542370 NA non-coding downstream 144515 36052878 ~ 36058125 (+)
G1542389 NA non-coding downstream 192872 36101235 ~ 36101463 (+)
G1542391 NA non-coding downstream 195503 36103866 ~ 36104133 (+)
med30 LOC106570051 non-coding downstream 226731 36135094 ~ 36197363 (+)
G1542282 NA other upstream 19008 35870237 ~ 35870558 (+)
G1542262 NA other upstream 43370 35845814 ~ 35846196 (+)
G1542254 yo84 other upstream 52023 35836677 ~ 35837543 (+)
G1542253 NA other upstream 52949 35835836 ~ 35836617 (+)
G1542090 NA other upstream 343587 35529543 ~ 35606179 (+)
G1542324 LOC106588514 other downstream 52838 35961201 ~ 35963705 (+)
G1544007 NA other downstream 855931 36764294 ~ 36765233 (+)
G1544137 NA other downstream 954560 36862923 ~ 36863183 (+)
G1544455 NA other downstream 1147620 37055983 ~ 37056487 (+)

Expression


Co-expression Network