LOC110496102 (LOC106570058)


Basic Information

Item Value
gene id LOC110496102
gene name LOC106570058
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35912005 ~ 35918139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952633.1
TATCCTATTCTGTGAAACATAATGTCATTTACAGTCAACTATCTAACCCTAAATCAAAATCATGATCCGTTCTAGACTCATGCTCATGTTATGACAGCAAGCCACGGGTATAAAGAGTTGTCAGCATAGCATAAAAAGTATTCAAATCCAATATCCGGTCATCTCTTTAAAGGGTTGGTTTCGGGTTTTCCAGCTCAGTGACATATGTATTTCCCAGTCTCGGCTGTCTCTTTAAGACAACGATAGCTTTGTGTCTGATTAATTCAATGTAACGAGAGATGCATTGGAGAAACCTATTTTCCGCTGTTACTGTGGATGTACCAGCTACAGAGAGTGTGAAAAAACTGGACATGTATTTCCTATTGGTCATGATCATCGGATAATCCAATTGGCGGTTATCATGTACTAAAGTTATAACGTGATACCGTTATTATAGGCAACGGATGTGGGGATACAAAAAATATGGATTTAAATTAGCTGGAAATTGAGTCTCCATAATTTCATCATTTTTCTGTAAGGGGATTTACCAAAAGTCGTTTTGGAGGAATAATAATATTTACATTAAATTGTTTGGAGGGGAGTTTTATTCTGACTGCACGAAATGTCTGAAAAACACGGAGGTTATCAAGgtCTGGAGGACTCCAATCGGCAGGCCATGTCCCAACCCATGCAGCAAATGCAGCCCCCTCCATACCTCCCATCCCAGGACCCTAACATTGGCCAACAACACCCCAATATGCAGCACCCCAACATGCAGCACCCCAACATGCAGCACCCCAACATGCAGCACCCCAACATGCACCCCCCCAGCTGTGGCCCCCAGCCCAACTACCCCCCTCCACCCCCGCCCCCTGGCTCCGATGGCTACCAGGAGACCCAGTTCCACAATGGCTCCTACGGACACCCAGGGGCCCCACAGGGCTACACAGTCCAGACCCAGGGTCCAGGAGGGGGGGTCCCACATGCCCCTGTAGGGTATTTTCAACCAGGATACCCTCTCCAGCTGCAGCCCTGCACAGCCTATGTTCCTGTCTACCCCATGGCGTCGggACAGCCCTACCAGGGGATGCCCCAGGGTCAGATGGGCATGCAGATGCCCCATGGCATCGCTCTGATGGAGCCCCGGCGCCCTCCTCACGACTACCTGCCCATCGCTGTGCTCACCACCGTCTGCTGCTTCTGGCCCACAGGAATCATAGCCATCATCAAGGCAGTACAGGTGCGTACAGCAGTGGCCAGGGGGGACATGGTGACGGCAGAGATAGCGTCCCGCGAGGCGCGTAACTTCTCCTTCATCAGCCTGGCGGTGGGCATTGCCTCCATCGTCCTGTGTACCATCCTCACCGTGGTAGTCATCATCGCCTCCCAACACCATGACGATGACTGGGAACCCTAATACATAACACAGTGTGGCATCATGGGATGTGTAGTTTTGGGTGGAGATTGAAGAATAAGAGCACCGGAATTCACTCTCTGAAACTGGTATGTTATAttggggggtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatataacacacacacacacacacacatatattggggtgtgtgtgtgtatatatatatatatatgcatcctgtgtactgtatacagtactgACCTGACCTAATGACTACTAACGGGTTGAGAACCAATCACACTTATATTCAATTGCCAAAACAAATAGATACACATTACTTGCCAGTATTACTTACCATTTACACTCGGATATAATAGCGCTCCATAGCACTTATGGGGGAAACAGAGTACATACACAGAGGCattaaagggcaattccaccacATTTCAACCTCATTTTCATTATCTATAGCACagtaccagtgtctacatatgtgaaaacggCGCATGACATCATCAAATGAGATTCACAGTGACGTGGGGAGTAAGAAAATGCCCTCCATCTGGCTAGAAACTTgttgcaggttttgaaaatcaGAGTTTTTCTTACTTTTCCTCCTGCCTTATCACAGAGAATAATCTTTAGGACCTTCTTCTCTTTTTAACCACAGAGCATAGAAACGTGCaattttcacatatgtagacactggtatggtgctggagataatgaatatgaggttgaaaagtgtcAGAATTGCCCTTTAACTATGAATTACAGATGAATTTATGGTCCCCTTGAACCTAGGTAGACCAAACCATGGATCACAATGTATCTTGATAAACTATTTAAGCCTTCACAAAACTGCCAAAAATATCACAAATCATGACTGACATTAGTGCCATATATAAATAGTATTGTGTAAGGAGGTTGTTTTGAATTACTTCTAATATAAATACTTTTATTGAATTGTGTTTAGTCATTTATAGTTTTTGATTTATGATTTTCATAAACACCCGCATCTGACGATAGTatttagaaaaaaatatttattaaatGGATCGTATAAATTATAGTATAAGACTGCCAAACAGACGTAGGTATGGAGGGATACAAATGATCAGTATTCATTTTACACACAATCAAATGGAAAGTAAATAAAGACATATTGTTGTCTTATTATGAGATTAATATATGAAAATTGTGGACAAAAAGATTGGGATTTTTCTCCTGAGATGAATGACATCTCTATTTTAAAGTTGTGCTGGCGGAGGGATACACCATAGGGTGTACTGTGACCGTGTCTTTCCCCCCGCCTTTTTTTTATGACATGGGACTATTTTAGCTACATTGACAAATTGTTTGTTGCATAAGATTGTTTAATACTTGTTCACTTTATTTCTGTATGTATTTAGGTATCTTATAATTGATTAGTTTATTTATAATATTTATTTTTCATAGATTATTAGCATGTCACCATTATGTTTGAGTTGAAATCAATAGTTTATTGTACCCCTATTGGCCTACAAAACcttaactaaactcagcaaaaaaagaaatgtcctctcactgtcaacagcgtttattttcagcaaacttaacatgtgtaaatatttgtatgaacataacaagattcaacaactgagacataaactgaaca
>XM_036952634.1
TATCCTATTCTGTGAAACATAATGTCATTTACAGTCAACTATCTAACCCTAAATCAAAATCATGATCCGTTCTAGACTCATGCTCATGTTATGACAGCAAGCCACGGGTATAAAGAGTTGTCAGCATAGCATAAAAAGTATTCAAATCCAATATCCGGTCATCTCTTTAAAGGGTTGGTTTCGGGTTTTCCAGCTCAGTGACATATGTATTTCCCAGTCTCGGCTGTCTCTTTAAGACAACGATAGCTTTGTGTCTGATTAATTCAATGTAACGAGAGATGCATTGGAGAAACCTATTTTCCGCTGTTACTGTGGATGTACCAGCTACAGAGAGTGTGAAAAAACTGGACATGTATTTCCTATTGGTCATGATCATCGGATAATCCAATTGGCGGTTATCATGTACTAAAGTTATAACGTGATACCGTTATTATAGGCAACGGATGTGGGGATACAAAAAATATGGATTTAAATTAGCTGGAAATTGAGTCTCCATAATTTCATCATTTTTCTGTAAGGGGATTTACCAAAAGTCGTTTTGGAGGAATAATAATATTTACATTAAATTGTTTGGAGGGGAGTTTTATTCTGACTGCACGAAATGTCTGAAAAACACGgtCTGGAGGACTCCAATCGGCAGGCCATGTCCCAACCCATGCAGCAAATGCAGCCCCCTCCATACCTCCCATCCCAGGACCCTAACATTGGCCAACAACACCCCAATATGCAGCACCCCAACATGCAGCACCCCAACATGCAGCACCCCAACATGCAGCACCCCAACATGCACCCCCCCAGCTGTGGCCCCCAGCCCAACTACCCCCCTCCACCCCCGCCCCCTGGCTCCGATGGCTACCAGGAGACCCAGTTCCACAATGGCTCCTACGGACACCCAGGGGCCCCACAGGGCTACACAGTCCAGACCCAGGGTCCAGGAGGGGGGGTCCCACATGCCCCTGTAGGGTATTTTCAACCAGGATACCCTCTCCAGCTGCAGCCCTGCACAGCCTATGTTCCTGTCTACCCCATGGCGTCGggACAGCCCTACCAGGGGATGCCCCAGGGTCAGATGGGCATGCAGATGCCCCATGGCATCGCTCTGATGGAGCCCCGGCGCCCTCCTCACGACTACCTGCCCATCGCTGTGCTCACCACCGTCTGCTGCTTCTGGCCCACAGGAATCATAGCCATCATCAAGGCAGTACAGGTGCGTACAGCAGTGGCCAGGGGGGACATGGTGACGGCAGAGATAGCGTCCCGCGAGGCGCGTAACTTCTCCTTCATCAGCCTGGCGGTGGGCATTGCCTCCATCGTCCTGTGTACCATCCTCACCGTGGTAGTCATCATCGCCTCCCAACACCATGACGATGACTGGGAACCCTAATACATAACACAGTGTGGCATCATGGGATGTGTAGTTTTGGGTGGAGATTGAAGAATAAGAGCACCGGAATTCACTCTCTGAAACTGGTATGTTATAttggggggtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatataacacacacacacacacacacatatattggggtgtgtgtgtgtatatatatatatatatgcatcctgtgtactgtatacagtactgACCTGACCTAATGACTACTAACGGGTTGAGAACCAATCACACTTATATTCAATTGCCAAAACAAATAGATACACATTACTTGCCAGTATTACTTACCATTTACACTCGGATATAATAGCGCTCCATAGCACTTATGGGGGAAACAGAGTACATACACAGAGGCattaaagggcaattccaccacATTTCAACCTCATTTTCATTATCTATAGCACagtaccagtgtctacatatgtgaaaacggCGCATGACATCATCAAATGAGATTCACAGTGACGTGGGGAGTAAGAAAATGCCCTCCATCTGGCTAGAAACTTgttgcaggttttgaaaatcaGAGTTTTTCTTACTTTTCCTCCTGCCTTATCACAGAGAATAATCTTTAGGACCTTCTTCTCTTTTTAACCACAGAGCATAGAAACGTGCaattttcacatatgtagacactggtatggtgctggagataatgaatatgaggttgaaaagtgtcAGAATTGCCCTTTAACTATGAATTACAGATGAATTTATGGTCCCCTTGAACCTAGGTAGACCAAACCATGGATCACAATGTATCTTGATAAACTATTTAAGCCTTCACAAAACTGCCAAAAATATCACAAATCATGACTGACATTAGTGCCATATATAAATAGTATTGTGTAAGGAGGTTGTTTTGAATTACTTCTAATATAAATACTTTTATTGAATTGTGTTTAGTCATTTATAGTTTTTGATTTATGATTTTCATAAACACCCGCATCTGACGATAGTatttagaaaaaaatatttattaaatGGATCGTATAAATTATAGTATAAGACTGCCAAACAGACGTAGGTATGGAGGGATACAAATGATCAGTATTCATTTTACACACAATCAAATGGAAAGTAAATAAAGACATATTGTTGTCTTATTATGAGATTAATATATGAAAATTGTGGACAAAAAGATTGGGATTTTTCTCCTGAGATGAATGACATCTCTATTTTAAAGTTGTGCTGGCGGAGGGATACACCATAGGGTGTACTGTGACCGTGTCTTTCCCCCCGCCTTTTTTTTATGACATGGGACTATTTTAGCTACATTGACAAATTGTTTGTTGCATAAGATTGTTTAATACTTGTTCACTTTATTTCTGTATGTATTTAGGTATCTTATAATTGATTAGTTTATTTATAATATTTATTTTTCATAGATTATTAGCATGTCACCATTATGTTTGAGTTGAAATCAATAGTTTATTGTACCCCTATTGGCCTACAAAACcttaactaaactcagcaaaaaaagaaatgtcctctcactgtcaacagcgtttattttcagcaaacttaacatgtgtaaatatttgtatgaacataacaagattcaacaactgagacataaactgaaca

Function

NR:

description
proline-rich transmembrane protein 1-like

GO: NA

KEGG:

id description
K23896 PRRT1; proline-rich transmembrane protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952633.1 False 3043 mRNA 0.42 5 35912005 35918139
XM_036952634.1 True 3031 mRNA 0.42 4 35912005 35918139

Neighbor

gene id symbol gene type direction distance location
LOC110496100 LOC106588520 coding downstream 29541 35871685 ~ 35882464 (-)
LOC110496099 LOC106588248 coding downstream 95335 35808966 ~ 35816670 (-)
LOC110496098 LOC106588247 coding downstream 103955 35741352 ~ 35808050 (-)
LOC110496097 LOC105009768 coding downstream 190815 35717955 ~ 35721190 (-)
LOC118941150 NA coding downstream 232105 35519535 ~ 35679900 (-)
LOC110496103 LOC106588514 coding upstream 154 35918293 ~ 35971717 (-)
LOC110496104 LOC106588515 coding upstream 57154 35975293 ~ 35980948 (-)
LOC110496109 LOC106588511 coding upstream 153556 36068180 ~ 36077299 (-)
LOC110496110 LOC106588509 coding upstream 165995 36084134 ~ 36100917 (-)
ext1b LOC103365060 coding upstream 277996 36196135 ~ 36308398 (-)
G1543297 NA non-coding downstream 26111 35885664 ~ 35885894 (-)
G1543291 NA non-coding downstream 41813 35869812 ~ 35870192 (-)
G1543288 NA non-coding downstream 51170 35860636 ~ 35860835 (-)
G1543285 NA non-coding downstream 68593 35843177 ~ 35843412 (-)
G1543265 NA non-coding downstream 159633 35752031 ~ 35752372 (-)
G1543321 NA non-coding upstream 53619 35971758 ~ 35972855 (-)
G1543343 NA non-coding upstream 89498 36007637 ~ 36034838 (-)
G1543360 NA non-coding upstream 119910 36038049 ~ 36038260 (-)
G1543363 NA non-coding upstream 122995 36041134 ~ 36041539 (-)
G1543364 NA non-coding upstream 124261 36042400 ~ 36043159 (-)
G1543128 LOC106588245 other downstream 407848 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 415023 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 562343 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 731977 35151351 ~ 35203984 (-)
G1542988 sast other downstream 773451 35137637 ~ 35138554 (-)
G1543346 LOC106588513 other upstream 92848 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1383369 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2004016 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 2229451 38121576 ~ 38152320 (-)
G1546053 NA other upstream 2247111 38165250 ~ 38214049 (-)

Expression


Co-expression Network