LOC110496103 (LOC106588514)


Basic Information

Item Value
gene id LOC110496103
gene name LOC106588514
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35918293 ~ 35971717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952631.1
ATTAAGTAAGATAATGTATTAATATTGAGATACATATCGTATTACATATGGCAATTTGACCTACTTCCGCCTTTGCCATTTCCGAAAAGACAGTGAACTGCTGCACCAACTTTCATCTGCGGTGGAGAAATGGAAAGAATAGATCTTCCCCCTGTGGGCCCCACAGATCTCCCGCTATCCCTGCTGGAGATGGGTTGCTCTGGCAGGTTTGAGCTCATCACACATCCACAGCCCAATGACCAGCCCCTGTATCCACAAAGCACGCTCCCCCATGGACTCCCTCCCACCAGTGTGGGCCTGGAGGCAGAGGTAGAGAAGCGCTTCCTACGCGACCCTGCCTGGCTTCCCATACACGATACCGACGCTGCCTTCCACAGATTTCTGAAGCTGGCTGAGCGAGATGTTCGTGTGGACTCTCTTCTTCATTGCTCttcatctcctctccactctggCATCTCAGTAGTCAGAGATCCAACGACAGGAATGCTTTTGGACTTCACTGAGGTGTTACTGGGGGACACAGGCATCTCTGCTAAGAATTCAATGTCCCTGCAGCGTCCACCAAACCCTAATCCCTCTGAGAGTCTCCGAGGAAGCAACACCAACTACCCCTTTCTGCCCGGTGGTATGGACGAGCTGACACTGGAGCAAATCAAGACGAAATCCGAGCTGGAGGAAGACATAGACTTTGAGAACGGGTTACTCACAGTGCCCCCTGGACTTAAAGTTGGGATGGACTTCAGTGACAAAGATGCCAAAACCACAAAGGGAGAAATCAATCTCCTGTCCCTCCTATCCACCTTTGACGACATCGTAGACTCCCAGCCTgaggcagaggagaaagagaaaggactTGGAAGCGGAGATGCTCCAAAACTACCCAGAACCAACAGCCTGGAAGACCTGGGGATCAAGGACTCTCCCTCTATACCTGGGACCACCTCGACAGAGAAGAAAGATGGAGGAACGACCAAACCAGGAGAGGGCCACGAGGAGAGGAAAAGATGGGCAATCCCAGTAGACATCACCTCCCCTTGCGATGACTTCTACAAACGCATCCCCAACCCTGCCTTCAAGTATCCCTTTGAGTTGGACACGTTCCAGAAACAGGCAGTGTTGAGGCTGGAGGCCCATGAGTCTGTGTTTGTGGCAGCTCACACATCAGCAGGCAAAACCGTGGTGGCAGAATACGCCATAGCTCTCTCACAAAAACACATGACcagGACCATCTACACCTCCCCCATCAAGGCGCTGTCCAATCAGAAGTTCCGGGACTTCAAGACCACCTTTGGGGATGTGGGGCTGCTGACTGGGGATGTCCAGCTGAGTCCTGAAGCCTCCTGTCTCATCATGACCACTGAGATATTGAGGTCCATGCTCTATAACGGTTCAGAGGTCATCAGAGATTTAGAGTGGGTGATCTTTGACGAAGTTCACTACATCAATGATGCTGAGaGAGGAGTGGTGTGGGAGGAGGTTCTGATCATGTTACCTGACCACGTCAGCATTATTCTGCTGAGTGCCACTGTCCCCAACGCTGTGGAGTTCAGTGAGTGGATCGGgcgcATTAAGAAGAAGCACATCTATGTGATCAGCACAGCGAAGAGACCTGTGCCTCTGGAGCACTACCTGTACACAGGCAACAGTACCAAGACCCAGAAAGAGATGTTCCTACTGCTGGACCCTACAGGCAACTTCCAAACCAAAGGGTACTATTCTGCAATAGATGCCAAAAAGGAACGCACCAGTAAACACGCCCAGTCCTTTGGGACGAAAAATGCATCTCAGAAGACTACACCCAACCAGgACCGGGCGGTGTGGCTTTCCCTCCTCCACTTCCTGTCCCAGCGCCAGCAGACCCCCGTCGTGGCGTTCACCTTCTCCAGGACGCGCTGCGACGACAACGCCCGCTCTCTAGCCTCCATGGACCTCACCAGCTCGGGGGAGAAGAGCGACATCCACTCCTTCTTCCAGAAGAGCCTGAGCCGCCTCAGGGGAGGGGACCGCCAGCTGCCCCAGATCCTGTTGATGAGGGACCTGCTGAAGAGGGGGATCGCCGTGCATCACAGCGGCATCCTGCCAATCCTAAAGGAGGTCATTGAGATGCTGTTCTCACGGGGGCTAGTAAAGgttctGTTTGCCACTGAGACGTTTGCTATGGGAGTGAATATGCCCGCGAGGACAGTTGTGTTTGACAGCATACGGAAACACGATGGTACCGGCTTCCGAAACCTTCTGCCTGgCGAGTATATCCAAATGGCTGGTAGAGCTGGTAGGAGAGGTCTGGATGCCACAGGCACTGTCATCATCCTCTGCAAGTCAGGGGTACATGATATGGGAGAACTACATGTAATGATGCTGGGGAAGCCCACAGTGCTGCAGTCCCAGTTCAGGCTGACCTACACCATGATTCTCAACCTGCTGCGTGTGGAGGCCCTCCGAGTTACCGACATGATGAGGAGGAGCTTCTCTGAGagccacagagacacacaggcCCATGAGCAGCAGATCGGTCAGCTGAAACagactctgtcctctcttcctcctctggaCACGGAGGGTCAGCTGTCTGACCTACTGCCGTACTACTACACTGTCACTGAGCTACGCATCACCGCTGAGGCgctgcagTGTGCAGTTCTGGGGTCCGTGAATGGGTTGAAGGCTCTCTCCGTGGGACGAGTGGTAGTGGTCAACAACAAACAGCACTTCAACGCCCTTGGAGTCCTCCTacagGTGTCCAGCGACTCAGTGAATCGTACATTTACCGCTCTCGTCATCTGTGAGAAAGGCaacgaggagggaggaggggacagcCGCAACTCCAGTGCCTTCCCCCACCTCTACAACACTGCCCTCTTTCTACCTGAGGGTCCCTGCAGTCACACGGTCCAGAAGCTGAAGCTACAGGACGTGTCAGCCATCACGGTCAAGACCCTGAAGGTGATCCCTGACCGAATCATTGACAACTATAACAAGAGGCAGCAGGCAcgcttcagGCTTGATCCTCCGGGCCAAGCCATCTCCACGGCAACCCAGGAGCTCCTGCGATTGGCGGAGGCCAACCCAGGCGGGGTGGTGACCCTTGACGCGGTGAATGACCTCCAGCTGAAGAGTGTGGATGTGGTGGAGGGCACCATGAGGCTGCGCATGCTGCAGGACAGCCTCAAAGACTTCAACTGCATCCACTCACCCACCTtctcagaacagTTTCTGCGGGTGCAGGAGAGGATGAGTGTTCAGGAGGAGCTGGACAAACTGCTCTTCCTCATCTCAGATCAGTCCCTGTCTCTACTGCCAGAGTACCACCAGAGAATCAAGGTGCTCCAGTCCCTGCAGTACGTGGACAATAGTGGTGCTGTGCAGCTGAAGGGCAGGGTGGCCTGCCAGATCAGTAGCCATGAGCTGCTCCTCACAGAGCTACTGTTTGAGAACGCCCTGAGTCCCCTGGCCCCTGAGGAGAGCGCCGCCCTGCTGTCCTGTCTGGTCTTTCAACAGAAGACCCAGGTGGAGCCCCACATCACCAACACACTGCAGGAGGGTATTGAGAGAGTGCTGGCAGTGGCCCAGCGTATTGGGGAACTGCAGAGGGACTGTGGGATAACCCAGACAGCTGAAGAATTTGTGGGCCAATTCAAGTTTGGCCTGACCGAAGTGGTATACTGCTGGGCCAGAGGCATGCCATTTGCAGAGATTGCACAGTTAACAGACGTCCAGGAGGGCACGGTGGTGCGCTGCATCCAGAGACTAGACGAGGTGCTGAAGGAGGTGCGCCAGGCAGCCCGCATCGTGGGAGACTCGGTCCTGGGCAGCAAGATGGAGAAGGCCTCCCTGGCCATTCGCAGAGACATCGTGTTCACTGCTTCGCTCTACACACACTGAGATTTGAAGGGAGAGAatggggggaagagggagagcgagagagggtgtaGATAGTGTTTGTATTGTAGGTGAAAgagtgtggagaggaggagatagagaggatgtAGGTACGGTATTATAGGTGAGAGAGTGCCAAGGTGCCTGAGCCAAGTCCCAAGCTCGATCAATGTGTGTGAGCATGGTGGGAGAATGGGTGAGTGTATgagggaggagtgtgtgtttgtgtgcgattGTATGGACATACAATTGTTTACCTGAGTCCTAATTAAATTCCTGGACATGGAAAGGGAATGCTCTTAAACAAATCAGACCAAAGTAGTAATGATAATGaaattatttgtaatttattGTACAGTAATAAAATCCACTGTGGACTAACA
>XM_036952629.1
CGTACACAGTTGTTATGGCGCATGAGTAAGAAAAATCACTATTCAACTTGCTAAAATTTATGGAATAAGTCAATTATAAGGAATGCATGGCCTACACTTGACAACATTAAATCTTCCCCCTGTGGGCCCCACAGATCTCCCGCTATCCCTGCTGGAGATGGGTTGCTCTGGCAGGTTTGAGCTCATCACACATCCACAGCCCAATGACCAGCCCCTGTATCCACAAAGCACGCTCCCCCATGGACTCCCTCCCACCAGTGTGGGCCTGGAGGCAGAGGTAGAGAAGCGCTTCCTACGCGACCCTGCCTGGCTTCCCATACACGATACCGACGCTGCCTTCCACAGATTTCTGAAGCTGGCTGAGCGAGATGTTCGTGTGGACTCTCTTCTTCATTGCTCttcatctcctctccactctggCATCTCAGTAGTCAGAGATCCAACGACAGGAATGCTTTTGGACTTCACTGAGGTGTTACTGGGGGACACAGGCATCTCTGCTAAGAATTCAATGTCCCTGCAGCGTCCACCAAACCCTAATCCCTCTGAGAGTCTCCGAGGAAGCAACACCAACTACCCCTTTCTGCCCGGTGGTATGGACGAGCTGACACTGGAGCAAATCAAGACGAAATCCGAGCTGGAGGAAGACATAGACTTTGAGAACGGGTTACTCACAGTGCCCCCTGGACTTAAAGTTGGGATGGACTTCAGTGACAAAGATGCCAAAACCACAAAGGGAGAAATCAATCTCCTGTCCCTCCTATCCACCTTTGACGACATCGTAGACTCCCAGCCTgaggcagaggagaaagagaaaggactTGGAAGCGGAGATGCTCCAAAACTACCCAGAACCAACAGCCTGGAAGACCTGGGGATCAAGGACTCTCCCTCTATACCTGGGACCACCTCGACAGAGAAGAAAGATGGAGGAACGACCAAACCAGGAGAGGGCCACGAGGAGAGGAAAAGATGGGCAATCCCAGTAGACATCACCTCCCCTTGCGATGACTTCTACAAACGCATCCCCAACCCTGCCTTCAAGTATCCCTTTGAGTTGGACACGTTCCAGAAACAGGCAGTGTTGAGGCTGGAGGCCCATGAGTCTGTGTTTGTGGCAGCTCACACATCAGCAGGCAAAACCGTGGTGGCAGAATACGCCATAGCTCTCTCACAAAAACACATGACcagGACCATCTACACCTCCCCCATCAAGGCGCTGTCCAATCAGAAGTTCCGGGACTTCAAGACCACCTTTGGGGATGTGGGGCTGCTGACTGGGGATGTCCAGCTGAGTCCTGAAGCCTCCTGTCTCATCATGACCACTGAGATATTGAGGTCCATGCTCTATAACGGTTCAGAGGTCATCAGAGATTTAGAGTGGGTGATCTTTGACGAAGTTCACTACATCAATGATGCTGAGaGAGGAGTGGTGTGGGAGGAGGTTCTGATCATGTTACCTGACCACGTCAGCATTATTCTGCTGAGTGCCACTGTCCCCAACGCTGTGGAGTTCAGTGAGTGGATCGGgcgcATTAAGAAGAAGCACATCTATGTGATCAGCACAGCGAAGAGACCTGTGCCTCTGGAGCACTACCTGTACACAGGCAACAGTACCAAGACCCAGAAAGAGATGTTCCTACTGCTGGACCCTACAGGCAACTTCCAAACCAAAGGGTACTATTCTGCAATAGATGCCAAAAAGGAACGCACCAGTAAACACGCCCAGTCCTTTGGGACGAAAAATGCATCTCAGAAGACTACACCCAACCAGgACCGGGCGGTGTGGCTTTCCCTCCTCCACTTCCTGTCCCAGCGCCAGCAGACCCCCGTCGTGGCGTTCACCTTCTCCAGGACGCGCTGCGACGACAACGCCCGCTCTCTAGCCTCCATGGACCTCACCAGCTCGGGGGAGAAGAGCGACATCCACTCCTTCTTCCAGAAGAGCCTGAGCCGCCTCAGGGGAGGGGACCGCCAGCTGCCCCAGATCCTGTTGATGAGGGACCTGCTGAAGAGGGGGATCGCCGTGCATCACAGCGGCATCCTGCCAATCCTAAAGGAGGTCATTGAGATGCTGTTCTCACGGGGGCTAGTAAAGgttctGTTTGCCACTGAGACGTTTGCTATGGGAGTGAATATGCCCGCGAGGACAGTTGTGTTTGACAGCATACGGAAACACGATGGTACCGGCTTCCGAAACCTTCTGCCTGgCGAGTATATCCAAATGGCTGGTAGAGCTGGTAGGAGAGGTCTGGATGCCACAGGCACTGTCATCATCCTCTGCAAGTCAGGGGTACATGATATGGGAGAACTACATGTAATGATGCTGGGGAAGCCCACAGTGCTGCAGTCCCAGTTCAGGCTGACCTACACCATGATTCTCAACCTGCTGCGTGTGGAGGCCCTCCGAGTTACCGACATGATGAGGAGGAGCTTCTCTGAGagccacagagacacacaggcCCATGAGCAGCAGATCGGTCAGCTGAAACagactctgtcctctcttcctcctctggaCACGGAGGGTCAGCTGTCTGACCTACTGCCGTACTACTACACTGTCACTGAGCTACGCATCACCGCTGAGGCgctgcagTGTGCAGTTCTGGGGTCCGTGAATGGGTTGAAGGCTCTCTCCGTGGGACGAGTGGTAGTGGTCAACAACAAACAGCACTTCAACGCCCTTGGAGTCCTCCTacagGTGTCCAGCGACTCAGTGAATCGTACATTTACCGCTCTCGTCATCTGTGAGAAAGGCaacgaggagggaggaggggacagcCGCAACTCCAGTGCCTTCCCCCACCTCTACAACACTGCCCTCTTTCTACCTGAGGGTCCCTGCAGTCACACGGTCCAGAAGCTGAAGCTACAGGACGTGTCAGCCATCACGGTCAAGACCCTGAAGGTGATCCCTGACCGAATCATTGACAACTATAACAAGAGGCAGCAGGCAcgcttcagGCTTGATCCTCCGGGCCAAGCCATCTCCACGGCAACCCAGGAGCTCCTGCGATTGGCGGAGGCCAACCCAGGCGGGGTGGTGACCCTTGACGCGGTGAATGACCTCCAGCTGAAGAGTGTGGATGTGGTGGAGGGCACCATGAGGCTGCGCATGCTGCAGGACAGCCTCAAAGACTTCAACTGCATCCACTCACCCACCTtctcagaacagTTTCTGCGGGTGCAGGAGAGGATGAGTGTTCAGGAGGAGCTGGACAAACTGCTCTTCCTCATCTCAGATCAGTCCCTGTCTCTACTGCCAGAGTACCACCAGAGAATCAAGGTGCTCCAGTCCCTGCAGTACGTGGACAATAGTGGTGCTGTGCAGCTGAAGGGCAGGGTGGCCTGCCAGATCAGTAGCCATGAGCTGCTCCTCACAGAGCTACTGTTTGAGAACGCCCTGAGTCCCCTGGCCCCTGAGGAGAGCGCCGCCCTGCTGTCCTGTCTGGTCTTTCAACAGAAGACCCAGGTGGAGCCCCACATCACCAACACACTGCAGGAGGGTATTGAGAGAGTGCTGGCAGTGGCCCAGCGTATTGGGGAACTGCAGAGGGACTGTGGGATAACCCAGACAGCTGAAGAATTTGTGGGCCAATTCAAGTTTGGCCTGACCGAAGTGGTATACTGCTGGGCCAGAGGCATGCCATTTGCAGAGATTGCACAGTTAACAGACGTCCAGGAGGGCACGGTGGTGCGCTGCATCCAGAGACTAGACGAGGTGCTGAAGGAGGTGCGCCAGGCAGCCCGCATCGTGGGAGACTCGGTCCTGGGCAGCAAGATGGAGAAGGCCTCCCTGGCCATTCGCAGAGACATCGTGTTCACTGCTTCGCTCTACACACACTGAGATTTGAAGGGAGAGAatggggggaagagggagagcgagagagggtgtaGATAGTGTTTGTATTGTAGGTGAAAgagtgtggagaggaggagatagagaggatgtAGGTACGGTATTATAGGTGAGAGAGTGCCAAGGTGCCTGAGCCAAGTCCCAAGCTCGATCAATGTGTGTGAGCATGGTGGGAGAATGGGTGAGTGTATgagggaggagtgtgtgtttgtgtgcgattGTATGGACATACAATTGTTTACCTGAGTCCTAATTAAATTCCTGGACATGGAAAGGGAATGCTCTTAAACAAATCAGACCAAAGTAGTAATGATAATGaaattatttgtaatttattGTACAGTAATAAAATCCACTGTGGACTAACA

Function

NR:

description
helicase SKI2W

GO: NA

KEGG:

id description
K12599 SKI2, SKIV2L; antiviral helicase SKI2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952631.1 False 4262 mRNA 0.54 29 35918293 35971612
XM_036952629.1 True 4230 mRNA 0.54 29 35918293 35971717

Neighbor

gene id symbol gene type direction distance location
LOC110496102 LOC106570058 coding downstream 154 35912005 ~ 35918139 (-)
LOC110496100 LOC106588520 coding downstream 35829 35871685 ~ 35882464 (-)
LOC110496099 LOC106588248 coding downstream 101623 35808966 ~ 35816670 (-)
LOC110496098 LOC106588247 coding downstream 110243 35741352 ~ 35808050 (-)
LOC110496097 LOC105009768 coding downstream 197103 35717955 ~ 35721190 (-)
LOC110496104 LOC106588515 coding upstream 3576 35975293 ~ 35980948 (-)
LOC110496109 LOC106588511 coding upstream 99978 36068180 ~ 36077299 (-)
LOC110496110 LOC106588509 coding upstream 112417 36084134 ~ 36100917 (-)
ext1b LOC103365060 coding upstream 224418 36196135 ~ 36308398 (-)
samd12 LOC106588503 coding upstream 364798 36336515 ~ 36461461 (-)
G1543297 NA non-coding downstream 32399 35885664 ~ 35885894 (-)
G1543291 NA non-coding downstream 48101 35869812 ~ 35870192 (-)
G1543288 NA non-coding downstream 57458 35860636 ~ 35860835 (-)
G1543285 NA non-coding downstream 74881 35843177 ~ 35843412 (-)
G1543265 NA non-coding downstream 165921 35752031 ~ 35752372 (-)
G1543321 NA non-coding upstream 41 35971758 ~ 35972855 (-)
G1543343 NA non-coding upstream 35920 36007637 ~ 36034838 (-)
G1543360 NA non-coding upstream 66332 36038049 ~ 36038260 (-)
G1543363 NA non-coding upstream 69417 36041134 ~ 36041539 (-)
G1543364 NA non-coding upstream 70683 36042400 ~ 36043159 (-)
G1543128 LOC106588245 other downstream 414136 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 421311 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 568631 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 738265 35151351 ~ 35203984 (-)
G1542988 sast other downstream 779739 35137637 ~ 35138554 (-)
G1543346 LOC106588513 other upstream 39270 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1329791 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 1950438 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 2175873 38121576 ~ 38152320 (-)
G1546053 NA other upstream 2193533 38165250 ~ 38214049 (-)

Expression


Co-expression Network