LOC110496108 (LOC106588512)


Basic Information

Item Value
gene id LOC110496108
gene name LOC106588512
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36023893 ~ 36068107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952636.1
TCAAGGGGCGGGAATGTTACACCGCGCGTGCAGGCAGGTGCGCGTCACACAACAGGTGCGTTCGTGATGTCACAACCCTAGTTACTGGAGCTCGAGGGAGAAAGATTTATTCAACGCTTTGCTTTTTCTGTGCATAAAGTACGTTTTACACGATTATAAACTagtagaggtggagggaaggattGAAAATGGGTAAAAACCTAAAGGAAGAGAACTCGGAGTCGTCGGAATATGGGGAACCTGCTCAGTATGACCCCACCTTCAATGGACCTGTTCGGAAAAGAGGCTGCACTGACATCATCTGCTGTGTTCTCTTCATTGTCGTTATCCTTGGCTACATGGCGGTGGGGATTTTGGCCTGGCTTTATGGTGATCCTCGACATGTCCTCTATCCACGGAACTCTACTGGAATGTTCTGTGGCATCGGGCCCAATAAAGCTCAACCCAGTGTGTTTTACTTTGACATACTGAAATGTGTCACATCAATCAACATCATGGCCGCCACCCTTAATGGGTTACAGTGCCCCACCACACAGGTGTGTGTGGAAAAGTGCCCAGATGTGTTCTGGGCTCTCAATCCTATTGCCTACTTACCGAATGCCAAGCCACAAGACTACTTCAACCAATCACTCTGCGTGCCATCCTTTGACCTAGCAGGAACTACACTGAAAGTTAAGGAAATTGTGGATCAAGAGCTGTGTCCGTTCTTCTACACTCCTACTATCTCTGTGCTGGGAAGATGCCTACCTGATGTTACCGCTCTGAAGAATATTCCTAATGACTTTGCCAATACGTGGGGCTTGCCATCAAGCATCAATGATACAGTCAATGGCATCAGGAACGCAAAAGGTGACATAGTAAACAGCTTCAATGCCAAAGAGATTGGAGTGAGAATCTTTGAGGACTTTGCGTCGTCATGGCAGTGGATCATAGCtgcaCTGGTCATAGCCATGGTGGTCAGTTTTCTGTTCCTCCTTCTGTTGCGGTTTATTGCCCCTGTTATGGTCTGGGTCCTTATATTTGGAGTGTTGGCAGTAGGTGCCTATGGCATATATCACTGCTGGTGGGAGTACGACAACTACAAAAAGTCTGCTGTCTCCATCACTGACATAGGCTTCACCACCGacttcaaggtctaccttcaggTCAAGGAGACCTGGCTGGCCTTCTTGATAATCCTGTCTGTGGTAGAGTGCATTCTTCTCCTGACCTTGATCTTTCTGCGGACCAGAATCCTCATCGCCATCGCTCTCATCCAGGAGTCCAGCAAAGCTGTCAGTCACATGATGTCTACGCTGTTCTACCCTCTCATCACCTTTGTTCTCCTGGTGGTGTGTGTGGCCTATTGGGGCATCACTGCTCTTTATCTGGCCACTTCAGGTATTCCAGTGTACAAAGTGGTGGCTCTCAACTCTACTCAGGATAACTGTGGTCAAATCAGTGGCAATGAGACCTGTGACCCACAGACATTCTACAACTCTACAGACTACTCGTGGTGCCGATCGGCACGCTGCATCTTCATCAAGTACAACAACGAGGGCCTGCTGCAGAGAAACCTGTTCAACCTGCAGATCTACAACGTGGTGGCCTTCCTGTGGTGCGTCAACTTTGTCATCGCCATGGGCCAGTGCAGCCTGGCCGGGGCCTTCGCCTCCTACTACTGGGCCTTAAACAAGCCCTCGGACATCCCCACCTTCCCGCTGTCCCAGGCCTTCATCCGCACAATACGATACCATGTTGGCTCCCTGGCATTTGGTGCTCTGATCCTCACCCTCATCCAGATAATCCGGATCATCCTGGAGTACCTGGACCACAAGACCAGAGcggcTCAAAACCCCTGTTCTCGGTTCCTCATGTGCTGTCTAAAGTGTTGCTTCTGGTGTTTGGAGAAGTTCATAAAGTTCCTCAATAGAAACGCCTACATCATGATTGCCATATATGGAAAAAACTTCTGTGTCTCCGCTAAAAACGCATTCATGCTTCTAATGAGGAacattgtcagGGTGGTGGTGCTAGATAAAGTGACGGACCTGCTGCTGTTCTTTGGGAAGATGCTAGTGGTGGGAGGAGTAGgTGTCCTGGCCTTCTTTTTCTTCTCTGGCAGAATAAGACTACCGGGCAGCAATTTCCGTACTGAAATGCTCAACTATTACTGGATGCCCATTATTGTGGTTGTGGTGGGAGCATACCTCATTGCTTATGGATTCTTCAGTGTGTACAGCATGTGTGTGGACACACTTTTCCTCTGCTTCTTGGAGGACTTGGAGCGACATGATGGAACGATGCAGAAGCCATATTACATGTCAAAGAAACTGATGAAAATCCTCAATAAAAAGAACAGGGGACCTAAAAATGGCAAAGGAAAGGATTGATGAAGTAGTGCCTTTAGACGAATTAGAACCACAGTTACTTTCAATATCCTAGAAACATCCTATAAATATGACATGTTTTTCCTTTCAGATCTTTCAgccttctctccttctgtttccCCCCTTCTGACATGTCAAAGTTGACCCATAATGGATCACTTTTTTGCACTTTCAACTTGAGATAACGTGTCCACGCTTATAAGTGTGATTAGATATTTTCTTAAATTCCAGCTACTTCTAACAATTTTAATTTACCAAAACTAGAGCTTTTTATTACTCTAACCAAAACCAAATGTTTATTCTCTCCCAGTGcttatttgtttttaaaaaatatacatttttctcAAGTGAGCAAATTATTTATTAGATACAGAAATCGCCGCCATAactgttttaaatacttttttttttatgatcCTCAGTATTCTGTATATTGTTTAAGGTCTCTATTTTTTTTcctattattctgtacgtaaatccgagacactccatttagtgaATGGTATGTGTTTATTTGTGGCTCGCTTACATCCAATTAGTATAtgttgcaaaatgtacaatatgttacgaattcgaATTTGTTGGTGCTAATGTttaggtggctaatgctaacgTCAGCTATCTCTAGTGGATaaggttaggttaaagggttagctaacatgctaattagctaaaatgttacttgtctgtgatgagattcgaacacgcaacctttggttTGCTAGACGTTCACGTTATATGCCCACCCACCctatttttgtttttgccttaagtaaaattctgtcttatgtaatatatcatactaatttAAGTGTCCCGGATGTAAGTTTACTATATTACGTCTAGTCTGAGACCAGTCTGGTCCCCTATTTGTATTGTTATTAAGTATGGACCCTGGAACAAATTTAATTCAGTCGAGTGAGCACATCCATCCATTTGGCTGCACGCACTCAACACAACTAGAGTACTTTCAGTTGTCAAGTATCAATGTTCATTTACCTCACATACTGTACTATCCAGCATGTCATAATCTTACTACATTCCTCAACCTCTTGTCTCCTGAGACCCAGAGAGGGAATGCATGTGGGAGTCAGCAATCATGTGATCTACTAATCACGTGATCATTCAACAGTCCAGTACAAGAGCAAGTGCCTCTACTGTTGAGCTAAATTCTAGTAGCATTACATTGCTGTAATGCTACTAGAACAGTTGGGGTAAACAACCTGTGCAACCAGTTCTGTTAATCATATGATCATCTCGACTGCAATCATATTACTAGATGGGATACACCTGATCCAGCTAATTTAGGTTACAATGAAACTGAGTAATTATTTTATTCTTGACATGGATCTAGTgtgttctttgtggttgaatgaATCCCATCTCTACCTAACCCATTGCCTTTCACAATTCAGCATATTTGGACATTTCATAAACAGACAACACCGGCCACATTAAATGTATTAAACAACTATTTATTCAGACAGAGCTTTGGAAATTGTTTTCCTGCTGTGACCATTTGGTTTTGCACAATGTCTCACAGTTGTCTTGCACAAGACTCAATACAAAtgtaatttcattttttttgggACAAAAATAAACTCCTAATACAAA
>XM_021571808.2
CCTGGCTTTATGGTGATCCTCGACATGTCCTCTATCCACGGAACTCTACTGGAATGTTCTGTGGCATCGGGCCCAATAAGTAAGGACCTCTGCGAGCTCAACCCAGTGTGTTTTACTTTGACATACTGAAATGTGTCACATCAATCAACATCATGGCCGCCACCCTTAATGGGTTACAGTGCCCCACCACACAGGTGTGTGTGGAAAAGTGCCCAGATGTGTTCTGGGCTCTCAATCCTATTGCCTACTTACCGAATGCCAAGCCACAAGACTACTTCAACCAATCACTCTGCGTGCCATCCTTTGACCTAGCAGGAACTACACTGAAAGTTAAGGAAATTGTGGATCAAGAGCTGTGTCCGTTCTTCTACACTCCTACTATCTCTGTGCTGGGAAGATGCCTACCTGATGTTACCGCTCTGAAGAATATTCCTAATGACTTTGCCAATACGTGGGGCTTGCCATCAAGCATCAATGATACAGTCAATGGCATCAGGAACGCAAAAGGTGACATAGTAAACAGCTTCAATGCCAAAGAGATTGGAGTGAGAATCTTTGAGGACTTTGCGTCGTCATGGCAGTGGATCATAGCtgcaCTGGTCATAGCCATGGTGGTCAGTTTTCTGTTCCTCCTTCTGTTGCGGTTTATTGCCCCTGTTATGGTCTGGGTCCTTATATTTGGAGTGTTGGCAGTAGGTGCCTATGGCATATATCACTGCTGGTGGGAGTACGACAACTACAAAAAGTCTGCTGTCTCCATCACTGACATAGGCTTCACCACCGacttcaaggtctaccttcaggTCAAGGAGACCTGGCTGGCCTTCTTGATAATCCTGTCTGTGGTAGAGTGCATTCTTCTCCTGACCTTGATCTTTCTGCGGACCAGAATCCTCATCGCCATCGCTCTCATCCAGGAGTCCAGCAAAGCTGTCAGTCACATGATGTCTACGCTGTTCTACCCTCTCATCACCTTTGTTCTCCTGGTGGTGTGTGTGGCCTATTGGGGCATCACTGCTCTTTATCTGGCCACTTCAGGTATTCCAGTGTACAAAGTGGTGGCTCTCAACTCTACTCAGGATAACTGTGGTCAAATCAGTGGCAATGAGACCTGTGACCCACAGACATTCTACAACTCTACAGACTACTCGTGGTGCCGATCGGCACGCTGCATCTTCATCAAGTACAACAACGAGGGCCTGCTGCAGAGAAACCTGTTCAACCTGCAGATCTACAACGTGGTGGCCTTCCTGTGGTGCGTCAACTTTGTCATCGCCATGGGCCAGTGCAGCCTGGCCGGGGCCTTCGCCTCCTACTACTGGGCCTTAAACAAGCCCTCGGACATCCCCACCTTCCCGCTGTCCCAGGCCTTCATCCGCACAATACGATACCATGTTGGCTCCCTGGCATTTGGTGCTCTGATCCTCACCCTCATCCAGATAATCCGGATCATCCTGGAGTACCTGGACCACAAGACCAGAGcggcTCAAAACCCCTGTTCTCGGTTCCTCATGTGCTGTCTAAAGTGTTGCTTCTGGTGTTTGGAGAAGTTCATAAAGTTCCTCAATAGAAACGCCTACATCATGATTGCCATATATGGAAAAAACTTCTGTGTCTCCGCTAAAAACGCATTCATGCTTCTAATGAGGAacattgtcagGGTGGTGGTGCTAGATAAAGTGACGGACCTGCTGCTGTTCTTTGGGAAGATGCTAGTGGTGGGAGGAGTAGgTGTCCTGGCCTTCTTTTTCTTCTCTGGCAGAATAAGACTACCGGGCAGCAATTTCCGTACTGAAATGCTCAACTATTACTGGATGCCCATTATTGTGGTTGTGGTGGGAGCATACCTCATTGCTTATGGATTCTTCAGTGTGTACAGCATGTGTGTGGACACACTTTTCCTCTGCTTCTTGGAGGACTTGGAGCGACATGATGGAACGATGCAGAAGCCATATTACATGTCAAAGAAACTGATGAAAATCCTCAATAAAAAGAACAGGGGACCTAAAAATGGCAAAGGAAAGGATTGATGAAGTAGTGCCTTTAGACGAATTAGAACCACAGTTACTTTCAATATCCTAGAAACATCCTATAAATATGACATGTTTTTCCTTTCAGATCTTTCAgccttctctccttctgtttccCCCCTTCTGACATGTCAAAGTTGACCCATAATGGATCACTTTTTTGCACTTTCAACTTGAGATAACGTGTCCACGCTTATAAGTGTGATTAGATATTTTCTTAAATTCCAGCTACTTCTAACAATTTTAATTTACCAAAACTAGAGCTTTTTATTACTCTAACCAAAACCAAATGTTTATTCTCTCCCAGTGcttatttgtttttaaaaaatatacatttttctcAAGTGAGCAAATTATTTATTAGATACAGAAATCGCCGCCATAactgttttaaatacttttttttttatgatcCTCAGTATTCTGTATATTGTTTAAGGTCTCTATTTTTTTTcctattattctgtacgtaaatccgagacactccatttagtgaATGGTATGTGTTTATTTGTGGCTCGCTTACATCCAATTAGTATAtgttgcaaaatgtacaatatgttacgaattcgaATTTGTTGGTGCTAATGTttaggtggctaatgctaacgTCAGCTATCTCTAGTGGATaaggttaggttaaagggttagctaacatgctaattagctaaaatgttacttgtctgtgatgagattcgaacacgcaacctttggttTGCTAGACGTTCACGTTATATGCCCACCCACCctatttttgtttttgccttaagtaaaattctgtcttatgtaatatatcatactaatttAAGTGTCCCGGATGTAAGTTTACTATATTACGTCTAGTCTGAGACCAGTCTGGTCCCCTATTTGTATTGTTATTAAGTATGGACCCTGGAACAAATTTAATTCAGTCGAGTGAGCACATCCATCCATTTGGCTGCACGCACTCAACACAACTAGAGTACTTTCAGTTGTCAAGTATCAATGTTCATTTACCTCACATACTGTACTATCCAGCATGTCATAATCTTACTACATTCCTCAACCTCTTGTCTCCTGAGACCCAGAGAGGGAATGCATGTGGGAGTCAGCAATCATGTGATCTACTAATCACGTGATCATTCAACAGTCCAGTACAAGAGCAAGTGCCTCTACTGTTGAGCTAAATTCTAGTAGCATTACATTGCTGTAATGCTACTAGAACAGTTGGGGTAAACAACCTGTGCAACCAGTTCTGTTAATCATATGATCATCTCGACTGCAATCATATTACTAGATGGGATACACCTGATCCAGCTAATTTAGGTTACAATGAAACTGAGTAATTATTTTATTCTTGACATGGATCTAGTgtgttctttgtggttgaatgaATCCCATCTCTACCTAACCCATTGCCTTTCACAATTCAGCATATTTGGACATTTCATAAACAGACAACACCGGCCACATTAAATGTATTAAACAACTATTTATTCAGACAGAGCTTTGGAAATTGTTTTCCTGCTGTGACCATTTGGTTTTGCACAATGTCTCACAGTTGTCTTGCACAAGACTCAATACAAAtgtaatttcattttttttgggACAAAAATAAACTCCTAATACAAA

Function

NR:

description
choline transporter-like protein 4 isoform X1

GO: NA

KEGG:

id description
K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952636.1 False 3983 mRNA 0.43 23 36023893 36068107
XM_021571808.2 True 3641 mRNA 0.43 19 36041056 36068107

Neighbor

gene id symbol gene type direction distance location
LOC110496106 LOC106588513 coding upstream 2120 35999199 ~ 36021773 (+)
LOC110496105 LOC106588516 coding upstream 48991 35971057 ~ 35974902 (+)
LOC110496101 LOC106588519 coding upstream 115530 35889566 ~ 35908363 (+)
LOC118941148 NA coding upstream 519257 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 589952 35412771 ~ 35433941 (+)
LOC110496111 LOC106588509 coding downstream 14002 36076661 ~ 36091606 (+)
LOC110496805 LOC106588507 coding downstream 79596 36147703 ~ 36158391 (+)
med30 LOC106570051 coding downstream 96809 36135094 ~ 36197363 (+)
ext1c LOC106588496 coding downstream 787021 36855128 ~ 36932244 (+)
trnaa-ugc-136 NA coding downstream 868351 36936458 ~ 36936527 (+)
G1542292 LOC106573797 non-coding upstream 83518 35909153 ~ 35940375 (+)
G1542296 NA non-coding upstream 135385 35888294 ~ 35888508 (+)
G1542295 NA non-coding upstream 136483 35887160 ~ 35887410 (+)
G1542283 NA non-coding upstream 149705 35871601 ~ 35874188 (+)
G1542281 NA non-coding upstream 154905 35868787 ~ 35868988 (+)
G1542389 NA non-coding downstream 33128 36101235 ~ 36101463 (+)
G1542391 NA non-coding downstream 35759 36103866 ~ 36104133 (+)
G1542415 NA non-coding downstream 69142 36137249 ~ 36141322 (+)
G1543508 NA non-coding downstream 247296 36315403 ~ 36315649 (+)
G1542324 LOC106588514 other upstream 60188 35961201 ~ 35963705 (+)
G1542282 NA other upstream 153335 35870237 ~ 35870558 (+)
G1542262 NA other upstream 177697 35845814 ~ 35846196 (+)
G1542254 yo84 other upstream 186350 35836677 ~ 35837543 (+)
G1542253 NA other upstream 187276 35835836 ~ 35836617 (+)
G1544007 NA other downstream 696187 36764294 ~ 36765233 (+)
G1544137 NA other downstream 794816 36862923 ~ 36863183 (+)
G1544455 NA other downstream 987876 37055983 ~ 37056487 (+)
LOC110496158 LOC106588463 other downstream 2125145 38193174 ~ 38204538 (+)

Expression


Co-expression Network