LOC110496110 (LOC106588509)


Basic Information

Item Value
gene id LOC110496110
gene name LOC106588509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36084134 ~ 36100917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571810.2
gcctatttcagAAATATATCTGattaaaatgtgatttaaaaCCTAACCACATAGTAAGACCTAAaagctcatttttgttttcatacatttttaccaaATATACAATTTTGACTTCGTGGCGGTAACTAGTAGAAACCGCTGACGGTCTTGTAAACATCCTGTGGATTTGAAAATAATCTTTGGGCGGGCGGAAGAAACTAAAAAGTCAGCGCCATTATGTTTGTTTTTAGTGGGAGGAGGAGTGGAAAAAAGTAAACTACGGCCgccaaaaaaaaaaactacaattGGAGCGTAATTGGTTGGTGTCCCCCCCTCACCCTTAGGTGAGAAGGTGCTGGGACAATGTTTTATGCTCACTTTGTCCTCAGCAAACGTGGGCCGCTGGCCAAGATCTGGCTAGCGGCCCACTGGGATAAGAAGCTCACCAAGGCTCATGTGTTTGAATGCAACCTGGAGAGCAGTGTGGAGAGCATCATCTGCCCTAAGGTGAAAATGGCCCTGCGTACATCAGGTCATCTGCTCCTGGGGGTGGTGAGGATCTACAACAGGAAAGCCAAGTACTTGTTGGCCGACTGTAATGAGGCATTCATCAAGATCAAGATGGCCTTCAGACCAGGTGTGGTGGATCtgccagaggagaacagagaagcTGCCTACAACGCCATTACCATGCCAGAAGAGTTCCACGACTTCGACCAGCCACTACCAGACCTAGACGATATCGACGTCACCAAGCAATTCACATTGAACCAGAGTCGAGTGGAAGAGATCACCATGAGGGAGGAGGTGGGCAACCTGAGCCTGCTGCAGGAGAATGACTTCGCTGACTTTGGAATGGACGACCGGGAGATGATGCGTGAGGAGAATGCCTTCGAGGTGGACATCATCCACAGGGCGTCAGCCTCTAACCTGCTCCTAGACCCAGAGACCTCGGTTGCCCAGATCCCAGACAACTCCAACCACCTGGAATACGACCAGTACAAAGATGACTTCGGAGAGGACCCCATGGCTGAGAGCGAGGGAGGCATGCTGGttGACAAGCTCCTCAGTAACGAGGCTGGGGATGGCATTTTCGACGACCCTCCCATCATCACCGAGAGCGTGCTGAGACTGCAGGACCACGATGACGAAGATGACTTTGATGCCCTCTCACcGGGAGGTCCAGACAGCCCAGACTCAGGCCCAGCGGAGCTCCTGCCCGCCATGCAGGACCAGACAGAGCAGACCACGCTGGTACACAACGAGGAGGAGGCCTTCGCCCTGGAGCCCATCGACATCACAGTGAAGGAAACCAAAGCCAAGAGGAAGAGGAAGCTAATTGTGGACAACCTGAAGGAGCTGGACAGCAAGACCATCCGTGCTCAGCTCAGCGACTACTCTGACATCGTCACCACGCTGGACCTTGCGCCGCCCACCAAGAAGCTGATGATGTGGAAAGAGACTGGAGGCGTGGAGAAGCTCTTCTCCCTGCCAGCACAGCCCCTCTGGAACAGCAGGCTTCTCAAGATGTTCACCCGCACCCTAACCCCCCTGGTGCCAGACgaaatgaggaagaggaggaagggaggtgaGGCAGACAGCCTGGATGAGTTCCTAAAGGACTTGGAGAACCCTGAGGTGCCCAGAGAGGAGGCTATGCAGAGGGACATCATCGACCAGACCATCCTGGAGGAGCCCAGTGTGCTGCAGGCATCAGCCATGGAGGGCAGCAGGACCACCCTGGACGAGTCAGTCATGCCCCCACCCTCCACGCGCGGCCAGAAACGCAAGGCACAGGACACAGAGCCAGGCTTGCCCaTGGGTACTCTGGAACAGGCCGCCAACCATTCAGGTGTGTCCCAGCAGTTGGACATGACAGTCTCGCTGCCCCCCGAGGACAGCACCAATCTCAGCCAGTTCCCTGAGCTCGACCTGAtagaggagaagaaggacaagaagGACGGAGAGGACTGCTCAGACGAGGATGAGGAGGGTCAGGCCGGTGACCAGgaccgagaggagaggagatggaacaAGAGAACCCAGCAGATGCTGCACGGCCTGCAGaGGGTGATGGCCAAGACAGGAGCCCAGCAAATTAGCCTGCTGGATTTGTGCAGGAACAACAACAAGAAGCAGGCTGCCGCCAAGTTCTACAGTTTCCTGGTTCTGAAAAAGCAGCAGGCGGTGGAGCTCAACCAGACCGAGCCATACAGCGACATCATCGCCACCCCTGGAGCCCGCTTCCACCTCATCTAGAGACTCAACACTGGCTGCTTTTACtctgaaacttttttttttatcctcttaCCTATGTGTTTTTGTCTTTCTTGAGATAAGAATGTTTTTTAAAGGTCAAGTGTGGGGATGAGGTCTCTGAATCATGAATGGTGGGATTGTAATTCTGTGTATTTTGGGCTTTTGTTATCCAATGAAAGCGCTTTGTGTTTTGCTAGAATGTGAGAGTGTTAATCCAATCATGTTGCTTTCCAAGGTTCTATTTCTCTCCCATTAAAAAAGTTATGTTTTATACCCTTTAGCCAAAAGGAGCATGTAGTATTGAGCAAGTTTCTGAAACACTCAACTGAATTGCATCCACCAGCAATCTTATTTTGAAGACCAATAGTATTTTAGTAGTAGCTTCAAGCATTCCAATGGGTTTGTTCTTAATTCTGTTTTTACAGTCCTTGACTGTAATTTGTTTTTATATCGGCAGACATTTAGGTCTCCATTGTTGTGGGATTTGAGAatgggctccagagtggcgcaaggcactgcatctcagtgcaagaggcgtcactacagtccctggcttgaatccaagctgtatcacattcGGCTgcgattggaagtcccatagggcagcgcacaattggcccagcaccgTCCAGGGTCGGCCATCATTGTAAAGAATTTGTTAACGTACTTGCCTAATTACAGGTTTAAATCATGTAGATTTTTTAAAATAGAAACTCTACCCTCATTGCCTGCTCcagtttcaaatattttttattccaAGTAATTCCTCCTGAATTGCATTTTATGGTATTACTTGAATAATTCCCTTTTAAGTCACATACTGTGTCAATGAAAATACTATCAATTATCTATGTTAATGGTTTGGCCAGAATAATACTTTTTTCGCATTAGATATTTTAAGCTATTTAACAAAATCTAAATTTCAATTGTGGGTGTCCAGAAATGACATTTCATTCATCAACTCTTTGATGCAGCTCAATGTCAAGTAATCTCTGGCAAATAGAGAAACTTATTTGGTATTAATAATCTAAAAGATAGTTTTGATGCAATGATAATTACTGGGAAGTCTTAATTCACTTATGTGCTTAGGTGTTGTGACAGTCATTCTTCGATAGCTTGAATACGATATTGCTCATCTTATAGCTACAAATGCATTGTTTTGATACCCACAAACTTCTGAAATTGTATATCATGTAATGTTTTAGCTCATCCCTTTAACTCTGCGCCGGTAAACTTGCATTCTCCTTTTTGTATAAAACCCAAAATGACACCTTGTAGATACTGTTGCTGAAGTGTTATGATGCCATGCCTGTAGTCCTGAGGCCCAGCAACTTGTTACTTTTCTAATAAAATGAATACTGTTTCAA

Function

NR:

description
double-strand-break repair protein rad21 homolog

GO:

id name namespace
GO:0000228 nuclear chromosome cellular_component

KEGG:

id description
K06670 SCC1, MCD1, RAD21; cohesin complex subunit SCC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571810.2 True 3605 mRNA 0.47 14 36084134 36100917

Neighbor

gene id symbol gene type direction distance location
LOC110496109 LOC106588511 coding downstream 6835 36068180 ~ 36077299 (-)
LOC110496104 LOC106588515 coding downstream 103186 35975293 ~ 35980948 (-)
LOC110496103 LOC106588514 coding downstream 112417 35918293 ~ 35971717 (-)
LOC110496102 LOC106570058 coding downstream 165995 35912005 ~ 35918139 (-)
LOC110496100 LOC106588520 coding downstream 201670 35871685 ~ 35882464 (-)
ext1b LOC103365060 coding upstream 95218 36196135 ~ 36308398 (-)
samd12 LOC106588503 coding upstream 235598 36336515 ~ 36461461 (-)
abrab LOC106570048 coding upstream 363653 36464570 ~ 36465358 (-)
angpt1 LOC106588502 coding upstream 397895 36498812 ~ 36560713 (-)
LOC110496117 LOC106612724 coding upstream 643461 36744378 ~ 36747323 (-)
G1543364 NA non-coding downstream 40975 36042400 ~ 36043159 (-)
G1543363 NA non-coding downstream 42595 36041134 ~ 36041539 (-)
G1543360 NA non-coding downstream 45874 36038049 ~ 36038260 (-)
G1543343 NA non-coding downstream 49296 36007637 ~ 36034838 (-)
G1543390 NA non-coding upstream 3362 36104279 ~ 36104504 (-)
G1543428 NA non-coding upstream 91831 36192748 ~ 36193845 (-)
G1543605 NA non-coding upstream 214922 36315839 ~ 36316263 (-)
G1543639 NA non-coding upstream 267015 36367932 ~ 36369697 (-)
G1543346 LOC106588513 other downstream 71448 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 579977 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 587152 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 734472 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 904106 35151351 ~ 35203984 (-)
G1544806 NA other upstream 1200591 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 1821238 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 2046673 38121576 ~ 38152320 (-)
G1546053 NA other upstream 2064333 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 2458732 38557052 ~ 38563365 (-)

Expression


Co-expression Network