LOC110496117 (LOC106612724)


Basic Information

Item Value
gene id LOC110496117
gene name LOC106612724
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36744378 ~ 36747323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469516.2
ACGTGATGTCAGAACgttctctccattccagaatgtgattgttaTGCAACAGTACACTTAGTccgcgctgccctcaaaccaaggcacgcaGCCTGTTTTTATTTATCGGCTGTTtccaacttgtcaatttcaaaatTACTTTCTAACAAGTTTTTATTTTCtaagaacagtttgaattgaggtgtgttccgcctcctcattcattcacataaaagtagttatttttacttttgaggacaataaaaaaaaaaaatatcatttCTGACCTGGACAAAATTCCCCAAGCACTTTGcaattgtttgtgcagttcaAGTCTGCAGACATTTGCGCATCTCCAGTCAGAACAGGATCTGCATACACATGTTCACATTTTCTGTCTGTTGCCCGCATCGCATTCATTGTTTTCGTTACCAATAACAACTTTGGGAATGGTTGCGTTTCTaccaaactaccctggctTTACGACTCCCAAGTGGCGCAACAGTTTAAGGAACAGCATCTCACTGCTAGAGGCATtgctacagacaccctggttcaaatccaggctgcgattctatcaaagtggtccaccttccctgtggccgATATggttgctgtctggacagtggagaggacatggacgtctcgtttgtcatgccactttactgccagctgttgactGTTCTCCTTgaactccacctcccctctctgcaTCTTCCTGCATCCGAATGCTGGCATCCCCTTCCTGTTCGACCTGACTGTGCCACAGGCTCCTGTCCTGTGCTGTTGAAAGAGCAGAAGCTACAAAGTGTGTCCCTTGCTGAGATGAGGAGCCAGCATGGTAATCACCGTGGACCTGGACACCCCAAGCCCCTCATAATGTTGGATGTCAGTGGTGGACCCTGGGTAAACTTGAACTTGACCCCAAACCTGTAACTTTCCTTAACATCAGGTACTCATTAATGCATAGGTCCTTGTATGGCACAAAGACCCAACCAAATGCTGATGTCAGGCTGctccaaggcatagcAATTGGTCTCCTCTACTATGTCTCCCACCatctcctctgtcagaaacaacttgaagcactctgcctcagagggaaatggcaaggggcgttgctctccagactgggactcatcaaagcaaacagcagggccaggaggagtgaaatggctggcggccttccagctaccacaaacctcctgtacttcatccactattggtctgcctccatcaccaccagcatttTCAAAGGGACCTGGGACTTCGTCAGTAGACAAGGAgtcctcagattcagggttctcaatggctacaaggttggggggcagctcctcactgtcagaatctgattcctgacttccagactcattgtcagaattgataaaaatctccagaatttcagcatttgtgagttatctccttttgaaagacattgctcATGCTACAGCTtagctacatacataaacaacaacactgaatagcTCAGAGTGGGAGTCAGAGATTACGTGATTGACTGCCGGCACGCGCCACTAgtatcaataaatcactatcaCAAAGTGTTTTTTACTTTGTGATTTACTTTAAAAGttactgttttattcacgttttcaattaccggtgacaaatcatgcattccgattctttCATAGATTACAATGGACACatattatgtgtgtaaaatagttttttgaaggttgtactgattatgatgagttTAGCTACTTCTAGCTATGTGTGgggccatgtttgttgacatacaatgcattctgggttccACGTAATCGTCTGttagaccaaagatgttataacacaATGAGGTGAGTGAGGGTTCACAAATTTTTTGAAAACTTCCGGAAATTAATGGTGGAATGATGTGTACAATGATAgacgacacacccccttcaacatgcatactataaacagaccaaactcatcttgtcttctcgtattatctttggtttctgtgaGAGAAAAAACATGACAGAAAGCAGAAACTACCCATCGTCGGATTACTGATGATGTGATTAATAATAAATAGCAATTTATATTAGCTAATTCATTTTGTAGTTTATGTCAGCTGAGAGTTGTCTAAATATGACCGTTAGTGTTACAtaaatctttcctcagttagctcTAGGacaaaatgtagcctacatttttccggtttggatgattgtgttatgcta

Function

NR:

description
PREDICTED: piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469516.2 True 2168 mRNA 0.43 4 36744378 36747323

Neighbor

gene id symbol gene type direction distance location
angpt1 LOC106588502 coding downstream 183665 36498812 ~ 36560713 (-)
abrab LOC106570048 coding downstream 279020 36464570 ~ 36465358 (-)
samd12 LOC106588503 coding downstream 282917 36336515 ~ 36461461 (-)
ext1b LOC103365060 coding downstream 435980 36196135 ~ 36308398 (-)
LOC110496110 LOC106588509 coding downstream 643461 36084134 ~ 36100917 (-)
sdc2 LOC106570046 coding upstream 11862 36759185 ~ 36793397 (-)
LOC110496119 ppp1r36 coding upstream 53193 36800516 ~ 36813545 (-)
LOC110496120 LOC106588498 coding upstream 76541 36823864 ~ 36835060 (-)
zgc:114119 LOC106588497 coding upstream 183977 36931300 ~ 36939648 (-)
zgc:101785 LOC106588494 coding upstream 227673 36974996 ~ 36989677 (-)
G1544000 NA non-coding downstream 81482 36661548 ~ 36662896 (-)
G1543855 NA non-coding downstream 177929 36565643 ~ 36566449 (-)
G1543853 NA non-coding downstream 179104 36564934 ~ 36565274 (-)
G1543850 NA non-coding downstream 180847 36563299 ~ 36563531 (-)
G1543739 NA non-coding downstream 258223 36485790 ~ 36486155 (-)
G1544246 NA non-coding upstream 19187 36766510 ~ 36766817 (-)
G1544252 NA non-coding upstream 34789 36782112 ~ 36782444 (-)
G1544253 NA non-coding upstream 35455 36782778 ~ 36782991 (-)
G1544258 NA non-coding upstream 40533 36787856 ~ 36788080 (-)
G1544260 NA non-coding upstream 43576 36790899 ~ 36791152 (-)
G1543346 LOC106588513 other downstream 731692 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 1240221 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 1247396 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 1394716 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 1564350 35151351 ~ 35203984 (-)
G1544806 NA other upstream 554185 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 1174832 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 1400267 38121576 ~ 38152320 (-)
G1546053 NA other upstream 1417927 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 1812326 38557052 ~ 38563365 (-)

Expression


Co-expression Network