sdc2 (LOC106570046)


Basic Information

Item Value
gene id sdc2
gene name LOC106570046
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36759185 ~ 36793397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571819.2
CCTGTATTTTCTTGCCGACTCTCTCTGCATACAGCAATGCGGTTGAGTTTGTGTAACGTGTGACATGGCCGAATCTTAGCGCGTTATAGCGGAACATCTGACTTGCGTTTCTACTACACTCAAGTGAATACAGGGTATAATTAAGTCCGGATTCAACTGTGAAACATCCAAGTCAAGTGTCCTACGCAGCAATTTGACTCgaactacatttttttttgtacgAAAAAGTGCGTGGAGGAATAACAAAACGCAACACGTATCCGGTGGGATTCCATTCTAGAGTAGAGAAACGCGAGGGTGCAAAGGGGAGAAGGGGTTAGTCACAAAcagaagaggaaagggagaggaggagaaagatttTGTATGTTTTTGCCGTATCGACACATTTTATTGAAGGAATAATGAGGAACATTTGGATAATTTTGACCCTCGGCATAACAGCCTTTCTCTCGGGGGAAAGGATAGCGGACGCGGCCAAGTCGTCCTCCGAAGTGGATGAACTTTTCATTGACGACACAGGGTCCGGGGGTTACTACCCTGAGGATGACGACGACTTTAACTCGGGGTCAGGATCAGGCACTGCTGAGGAGGTGATCGAGGAGGCGGTGACCGTGAACACGTTGTACATTGTGCCCAAAGCAGAACCCACCCAGGACTCCACCAAAGACTTCACTCCCAGAGTGGAGACAGACACGCCCAGAGAAGACCTGCCTGGGGAAACGCCCTGGAAGCCAGTCAGAACTGAGCCCCCAGTACCCGTCACCGAGGATCTACGCAAGAACCAGATCACCAGCACCCCCAGCTCCCCCCTGGAGCCCATCGATGTTCGCTCGGAAAACCTCTTCCAGAGGACGGAGGTGCTGGCAGcTGTCATTGCTGGTGGAGTTATTGGCTTCCTCTTTGccatcttcctcatcctcctcttggTTTACCGCATGAGGAAGAAGGACGAGGGCAGCTACGACCTGGGAGAGAGGAAACCCTCTGGGGCAGCCTATCAGAAGGCCCCAACCAAGGAGTTTTATGCATAAAGCCCCGCCCCCTCATGAGAAGATTGACAAATCGGAGTGACGGTTTATAGCAGTCCATGACAACGAGAAAAAACCTGTTCAAATAtactgtaacaacaacaacaaaaaataaaaagttaattGAGGAAAAATGACATAAAGGAAAGCTTTTGCATAGAGTATTGTAATTaagacattttctttttttttttaatgaaaagccAAGCATTGCTTATTTTATGGCATATCTCAGTGTATTTAAACATTTTGTGTATTATTTGAAAaggcaaaaaaatataaaaacatttaaaaaaatctgttaCGGTGATAAAAAACTATTGCATCTGTCTTCTGTCAAAGGAGCTGTTTTTAGTCACTGACTACTATTTAACTGTAGCAGTATGTATTTGTAAAGAAATGTTTTAAAAGTGGAAATAATTGAATATAATTATTCTGTATCAATCCTATAAAAAAATATTGTCCTAGCATGTCTGGCGTTGATCTTTAAAAGGTGTATTTcattcatttatatttttttctcagatgttaaaaaaaaaaaaatatatatatgcctTTTGTAGTTTTCATGAAGCTTTTTCATCTTCATATTAACGCTGATAACTGTCAATGTAAATGTTCTCCCTTCAGGTTACAATGTCAATCAATCTAGTTGAACTTGAgcgtttcatttattttttttgttcgtcttgtttgttttctttcaatGTTTGTTTTGGTCAAAACCATTTCTTATACAGCATACATGTTAAAACACAGTAATCGGTCTTAAAAAGCTAAGATGTGTCAGGGGCTCAAGAAAAACACAAGACTTACTTTACAGTATGTCTTGTGGatgttttttttaacattttaatttaattgCATACGACTTCTCATATTGCACATTCACCTCATTGCTTCTTTGCTGGTCTCGTTCAGCTCTGAGTGTTTACGATGTTTGGGGTTAAATTTGGCTCTGGGGCAATGTTTTCCCCTAGTTTACTCTGCCTGTCCCATCTGCCTTTGCTCCTCCCTCACATCCTCagcattctctccatctcctccatgtAAGCGGTCGGCCTCTCCCCTTTTTCTCACTCCACTGTGTTGCCAGTGTTTTTGTCTCCCCTGTGTCGATGGTTTAGCCCGGAGATCCTCGATTCTCAGAGAGCGTGAGGTTGGTTACCAGGAGCAAGACAGAGAAATACACCATGGGATTGACCTGTTGTTGCCATCCTCTCTCATTGAAACAGTCACCTCTGCATGAAAGGTACAACAGGTTGTGAAGTTGCCTTTTGAGCTGTACACAAATGTGAAGTAGACGTCATCTGAACTCCCAACCACCCACATGAGGCTATCCTCCCTgcaccccctcctccctcattccctcctccTTTCTGCTATACCCTCCAGCTTCTGCCtgcaatctctttctctctctctctctcatattatcATCATAGAAAAGATAGGTACTAAACTGCAAACCAAAACCCAAAGACACAGTATTCTCACCATTGCTTGAACGTATTCCCATTATGGCCACGTTACTTTCTCATTTTGTTTTCcttcatttttttacatttttttttatagcttTTAATTTTGTTAGAGACTTGACCATTGAGTCCAATTGCTTATTAGTATACAAAaagatatatattatatatataaatgcATATTCACAAATGTTTTAAACCTTCAAAGTGCCTACCATTTGGAAATGTACTTGCTCTCCCGGAGAGCATAAGGAGATGCATACGTTACACCAGGAGGATGATGATAATGACTGGCATTCTGTGAGCACAGATGACTGTAATGgtcaccacttttttttttttttttttaagtcttaCAAAAGCAGACAGTATTGTACCTATACGTtgaaacaacactactgaataaACATTGTGGCCTAA

Function

NR:

description
syndecan-2-A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
K16336 SDC2, CD362; syndecan 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571819.2 True 2929 mRNA 0.41 5 36759185 36793397

Neighbor

gene id symbol gene type direction distance location
LOC110496117 LOC106612724 coding downstream 11862 36744378 ~ 36747323 (-)
angpt1 LOC106588502 coding downstream 198472 36498812 ~ 36560713 (-)
abrab LOC106570048 coding downstream 293827 36464570 ~ 36465358 (-)
samd12 LOC106588503 coding downstream 297724 36336515 ~ 36461461 (-)
ext1b LOC103365060 coding downstream 450787 36196135 ~ 36308398 (-)
LOC110496119 ppp1r36 coding upstream 7119 36800516 ~ 36813545 (-)
LOC110496120 LOC106588498 coding upstream 30467 36823864 ~ 36835060 (-)
zgc:114119 LOC106588497 coding upstream 137903 36931300 ~ 36939648 (-)
zgc:101785 LOC106588494 coding upstream 181599 36974996 ~ 36989677 (-)
LOC110496124 LOC106588493 coding upstream 196844 36990241 ~ 37056749 (-)
G1544000 NA non-coding downstream 96289 36661548 ~ 36662896 (-)
G1543855 NA non-coding downstream 192736 36565643 ~ 36566449 (-)
G1543853 NA non-coding downstream 193911 36564934 ~ 36565274 (-)
G1543850 NA non-coding downstream 195654 36563299 ~ 36563531 (-)
G1543739 NA non-coding downstream 273030 36485790 ~ 36486155 (-)
G1544269 NA non-coding upstream 17533 36810930 ~ 36811204 (-)
G1544271 NA non-coding upstream 18329 36811726 ~ 36812025 (-)
G1544291 NA non-coding upstream 53003 36846400 ~ 36846628 (-)
G1544292 NA non-coding upstream 54800 36848197 ~ 36848424 (-)
G1543346 LOC106588513 other downstream 746499 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 1255028 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 1262203 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 1409523 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 1579157 35151351 ~ 35203984 (-)
G1544806 NA other upstream 508111 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 1128758 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 1354193 38121576 ~ 38152320 (-)
G1546053 NA other upstream 1371853 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 1766252 38557052 ~ 38563365 (-)

Expression


Co-expression Network