LOC110496120 (LOC106588498)


Basic Information

Item Value
gene id LOC110496120
gene name LOC106588498
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36823864 ~ 36835060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952641.1
AGCTGATCGTAAACCGAAAGTACGTTTGATCTTATTCAGGTTCCATTTTGAGAGGATAGAGGAAAAAATCATCTTGAGAGAAGAAAATAATAAAGTctgatgagagaggaggggagtggggcactgactctaaaatgagtctctctgttGACCGAGAGGAGGGGGGCACTGCATCTAACATTAATCTCTCTGGGGTACATGACACTAAAGCTACGagCTCAATCCATCAGGAGAGACCCAACTCCCCTGTATGCAGCTGTGTGTCCATGAAATGTGACCAATCTATGGATCTACCTCTCACGTTTAAAGAGGGAAACCTTTCTTCTGAAAAAAGGCAAGAAGCCATCAACTTGGTCAATTGGTCTACAACACTTTAACCCAGAACTCAAGTCTTGTGTAATTAGTCAGATGCTGGATTATGTTTGGCGTCCATACGTGttaagagaacagagagaactatAAAAGTGAACTGGAACGAAGAGAGAGAAAATGCAACAAAATACCTCTGTGTTTTTTATATTTATGTTCCATGTTATACATCTGATTGAAGAATGAGGAGTTTTGTGCTTTTGTCAGGATCGAACATCAGAGACCTGCCTCCCCTGTACccagctgtgtgtccatgaagagtgacaAATCTATGAATCCACCTATCATGTTCAGAGAAGGAGATGTTTCCATTGAACAAAGGATCAAACATCAGAGACCTGCCTCCCCTGTACccagctgtgtgtccatgaagagtgacaAATCTATGAATCCACCTATCATGTTCAGAGAAGGAGATGTTTCCATTGAACAAATGATAAAGCAGCAGAGACTAGACTCACCTGTACCCAGCTGCGTGTCCATGAAGAATGACCTGTCTATGGAACCACCTCTCACATTTAAAAAGGAAAACATTTCTAGTGTAGAAAGGGTCCAGCAGGAGAGACCAGCCATCACGGCACCCAGCTGTGTGTCTATGAAGAGTGACCAGTCTATGGATCCACCTTTAAGGTTCAGAGATGGAGTTGTTTCCGAACAAATAGCCCAACAGGAGCTATCAAGACAGTTCAAGACAGTGCTGAGTTCAGATCTCCCTGAAGGCTTTGAGATgaaccagaaggagcttgctgacGCACTGGAGAAAAGTgagcttgatttgatttgccaACGGGAACTCAAATCTAATCTAAAGACGAAATATCAAAGTGCATTTGAGGGTATTGCTAAGCAAGGGaacccaacacttctcaataAGATCTACACAGAACTCTACATCACAAAGGGTGGAAATGGAGAggtcaataatgaacatgaggtAAGACAattggagacaacaaccaggaaacaAGCAAGACCAGAGACGGCAATCAAATGTAATGACATCTTCAAACCTTTACAAGACAGACCtatcagaactgtgctgacaaagggagtcgccggcattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcagGATGTCCAATTTGTATTTTCACTTCCTTTtcgggagctgaatttgatgaaAGGGGAAAAACACAGTTTGTTTGAACTTCTCGATCACTTCTCAATGGAAACAAAAAAATTAAGAATCTCCAACTTTGACAAATAcaaagttctgttcatctttgatggtctggatgagtgccGACTGCCCCTAGACTTCAAGAGGAACAAGAGCTGTTGTGATGTCACAGAGTCGACCTCAGTGGATATGCTGCTGACAAACCTCATCAAGGGAAATCTGCTGCCCTCTGCTCTTCTCTGGATAACTACTAGACCTGCAGCAGCCAATCAGATCCCTTCAGGATGTGTTGACCAGGTTACAGAGGTGCGAGGGTTTAATGATTCACAAAAAGAGGAATACTTTAGAAAGAGATTTACTGATAAGAACTTGGCCAGTAGAATCATCTCACACATGAAGTCATCAAGGAGCCTCTACATCATGTGCCACATAccagtcttctgttggatctCTGCCACAGTTTTGGAGAAAATGGGTGAAGAAGGGAGAGAGTTGCCCCAGACTCTAACTGAGATGTGCACACACTTCCTGGTATTTCAGACCAAACAGACGAATGAAAAGTATCTTGCGAAAGAAGAGACAGGTCCACACTGGAATAAAACAAGAATTCTGTCACTGGGAAAACTGGCTTTTCAACAGCTTGTGAAAGGCAATCTAATTTTCTATGAAGAAGACCTGAAAGAGTGTGGCATTGATGTCAGGGAAGCCTCAGTGTACTCAGGAGTGTGCACACAGATCTTCAGAGAAGAGTGTGGGCTGTACCAGGTCAAGGTGTTCTGCTTTGTGcatctgagcattcaggagtttctggctgctgtatatgTGTTTCTCAGATTCAGCAATGACAATGATAATCTAATAGCCAAACCACAGTTAATCTTCAAAACATTTTGGTTCCGAAAAATACCTGCAATTGACTTCCACAAGAGTGCTGTGGATAAAGCCTTGGAGAGTGTGGGTGGACACCTTGAtcttttcctccgcttccttctgggcCTCTCACTGGAGTCAAATCATAAGCACTTACGAGGTCTACTGACAAAGACAAGAAGCAGCCCACAGAGCCATGAGGAAACAGTCATGTACATCAAGGAGAAGATCAGGGAGAATCCCTCTCCAGAGAGGTgcatcaatctgttccactgtctgaacGAACTGAATGACCATTCTCTAGTGAAGGAGATCCAAAGTTACCTGAGCTCGGGAAATGTCTCCAGTGAAAAACTCTCACCGGCACTGTGGTCAGCTCTGGCctttgtgttgctgacttcagAAGAGGATCTGGAGgtgtttgacctgaagaaatactccagatcagaggaaggtcttCTGAGGCTGCTGCCAGTTGTCAAAGCATCCAGAACAGCTCTGCTGTCAGACTgtggagtcacagaggaaggTTGTGCTTCTCTGGCCTCAGCTCTGAAgacaaacccctcacacctgagagagctggatctgagtaacaatgacctgaaggattcaggagtgaagatgctctctgctggactgcaGGATCCACAatgtaaactggagactctgaggtccGTATTCCTATTTTTAGTCAACTTGTGATAACTGTTCACTGGATCCACATGTGTTTATCAGACTTAAATAGTTTAATTTGTCTCTatgctccagcattttggatttaagATATTAGGCAACAGTACAGAATAACACTTTTAGGGGAATTTCAAACATATCTATCTTACCATTTAGACATAAAATATCTTTATAATGTATCTCCCCCCCATTAGAAgatgtcataagtatttggacaaattcacttttgGTATATTAAAGTAGTCGAAAAGTGTAGTATTTCATCCCATATTCCTTGCACTCtgtgattacatcaagcttgtgactctgcaaacttgttggatgcatttgcagtttgttttggttgggtTTTGGATTATGTTTTGCCGAATAGAAACCGAATGGTGAATAATGTCTGGTGTCACTTTTATTGTGATTAAGAATGTAAGATGTTCTGAACACTTCtgcattcatgtggatgctaccatgattatggataaacATGAATGAATTAATGATGTATGACAACGTTACAGAGGCACAAATGTctgaggttagcatgttttgttttaGCCTCTAActtctcactcattattattcatgaTTCCTTCATGATTTTTCTTAATCGTGGCATTATTTGAATTCATTTAGTAGTGTTAAGAAACAAATTTACTCCATTCATCATTCAGTTAGGTTAAACATCtcccaaaacacaaccaaaacaaactgcaaatgcatccaatgaGTTTGTATAGTCACAagctaaacttttgactactttaatacattaTACAAACTAATTTGTCCAATACTTACAGTGGcttgtttttccta

Function

NR:

description
NLR family CARD domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952641.1 True 3919 mRNA 0.42 9 36823864 36835060

Neighbor

gene id symbol gene type direction distance location
LOC110496119 ppp1r36 coding downstream 10319 36800516 ~ 36813545 (-)
sdc2 LOC106570046 coding downstream 30467 36759185 ~ 36793397 (-)
LOC110496117 LOC106612724 coding downstream 76541 36744378 ~ 36747323 (-)
angpt1 LOC106588502 coding downstream 263151 36498812 ~ 36560713 (-)
abrab LOC106570048 coding downstream 358506 36464570 ~ 36465358 (-)
zgc:114119 LOC106588497 coding upstream 96240 36931300 ~ 36939648 (-)
zgc:101785 LOC106588494 coding upstream 139936 36974996 ~ 36989677 (-)
LOC110496124 LOC106588493 coding upstream 155181 36990241 ~ 37056749 (-)
prdm1b LOC106588492 coding upstream 241967 37077027 ~ 37090104 (-)
LOC110496131 borea coding upstream 903781 37738841 ~ 37744121 (-)
G1544271 NA non-coding downstream 11839 36811726 ~ 36812025 (-)
G1544269 NA non-coding downstream 12660 36810930 ~ 36811204 (-)
G1544260 NA non-coding downstream 32712 36790899 ~ 36791152 (-)
G1544258 NA non-coding downstream 35784 36787856 ~ 36788080 (-)
G1544291 NA non-coding upstream 11340 36846400 ~ 36846628 (-)
G1544292 NA non-coding upstream 13137 36848197 ~ 36848424 (-)
G1544302 NA non-coding upstream 21787 36856847 ~ 36857354 (-)
G1544304 NA non-coding upstream 23511 36858571 ~ 36858812 (-)
G1544308 NA non-coding upstream 27252 36862312 ~ 36862846 (-)
G1543346 LOC106588513 other downstream 811178 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 1319707 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 1326882 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 1474202 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 1643836 35151351 ~ 35203984 (-)
G1544806 NA other upstream 466448 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 1087095 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 1312530 38121576 ~ 38152320 (-)
G1546053 NA other upstream 1330190 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 1724589 38557052 ~ 38563365 (-)

Expression


Co-expression Network