Item | Value |
---|---|
gene id | ext1c |
gene name | LOC106588496 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048582.1 |
NCBI id | CM023236.2 |
chromosome length | 74657750 |
location | 36855128 ~ 36932244 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
mediator of RNA polymerase II transcription subunit 30-like |
id | name | namespace |
---|---|---|
GO:0015012 | heparan sulfate proteoglycan biosynthetic process | biological_process |
GO:0031227 | intrinsic component of endoplasmic reticulum membrane | cellular_component |
GO:0016758 | transferase activity, transferring hexosyl groups | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036952643.1 | False | 3812 | mRNA | 0.53 | 12 | 36855128 | 36931738 |
XM_036952642.1 | False | 4208 | mRNA | 0.52 | 12 | 36855804 | 36931738 |
XM_036952644.1 | False | 4176 | mRNA | 0.52 | 12 | 36855806 | 36931738 |
XM_036952645.1 | False | 4152 | mRNA | 0.52 | 12 | 36855806 | 36931738 |
XM_036952646.1 | False | 4120 | mRNA | 0.52 | 12 | 36855808 | 36931738 |
TU1766949 | True | 824 | lncRNA | 0.45 | 2 | 36931311 | 36932244 |
36,840,000
36,850,000
36,860,000
36,870,000
36,880,000
36,890,000
36,900,000
36,910,000
36,920,000
36,930,000
36,940,000
36,950,000
36,960,000
36,970,000
36,980,000
36,990,000
37,000,000
NC_048582.1
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gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
med30 | LOC106570051 | coding | upstream | 661278 | 36135094 ~ 36197363 (+) |
LOC110496805 | LOC106588507 | coding | upstream | 696737 | 36147703 ~ 36158391 (+) |
LOC110496111 | LOC106588509 | coding | upstream | 770362 | 36076661 ~ 36091606 (+) |
LOC110496108 | LOC106588512 | coding | upstream | 787021 | 36023893 ~ 36068107 (+) |
LOC110496106 | LOC106588513 | coding | upstream | 833355 | 35999199 ~ 36021773 (+) |
trnaa-ugc-136 | NA | coding | downstream | 4720 | 36936458 ~ 36936527 (+) |
LOC110496123 | NA | coding | downstream | 34641 | 36966379 ~ 36967984 (+) |
LOC110496127 | NA | coding | downstream | 84022 | 37015760 ~ 37022862 (+) |
LOC110496809 | LOC106588491 | coding | downstream | 200851 | 37132589 ~ 37141720 (+) |
LOC110496810 | LOC106588469 | coding | downstream | 534053 | 37465791 ~ 37720841 (+) |
G1544129 | NA | non-coding | upstream | 5427 | 36849463 ~ 36849701 (+) |
G1544123 | NA | non-coding | upstream | 12429 | 36842459 ~ 36842699 (+) |
G1544118 | NA | non-coding | upstream | 18215 | 36836651 ~ 36836913 (+) |
G1544102 | NA | non-coding | upstream | 37569 | 36817349 ~ 36817559 (+) |
G1544101 | NA | non-coding | upstream | 40222 | 36814674 ~ 36814906 (+) |
G1544370 | NA | non-coding | downstream | 13018 | 36944756 ~ 36945009 (+) |
G1544377 | NA | non-coding | downstream | 17894 | 36949632 ~ 36949845 (+) |
G1544379 | NA | non-coding | downstream | 18285 | 36950023 ~ 36950579 (+) |
G1544402 | NA | non-coding | downstream | 33262 | 36965000 ~ 36965299 (+) |
G1544404 | NA | non-coding | downstream | 33746 | 36965484 ~ 36965684 (+) |
G1544007 | NA | other | upstream | 89895 | 36764294 ~ 36765233 (+) |
G1542324 | LOC106588514 | other | upstream | 891423 | 35961201 ~ 35963705 (+) |
G1542282 | NA | other | upstream | 984570 | 35870237 ~ 35870558 (+) |
G1542262 | NA | other | upstream | 1008932 | 35845814 ~ 35846196 (+) |
G1544455 | NA | other | downstream | 124245 | 37055983 ~ 37056487 (+) |
LOC110496158 | LOC106588463 | other | downstream | 1261514 | 38193174 ~ 38204538 (+) |
G1545533 | LOC104965079 | other | downstream | 1743289 | 38675027 ~ 38676004 (+) |
LOC110496176 | LOC106588451 | other | downstream | 1758700 | 38677975 ~ 38696088 (+) |
G1546605 | LOC106588434 | other | downstream | 2184750 | 39116488 ~ 39120019 (+) |
G1544142 | NA | non-coding | upstream | 56620 | 36874479 ~ 36874691 (+) |
G1544139 | NA | non-coding | upstream | 63195 | 36867899 ~ 36868116 (+) |
G1544135 | NA | non-coding | upstream | 69767 | 36861339 ~ 36861544 (+) |
G1544137 | NA | other | upstream | 68128 | 36862923 ~ 36863183 (+) |