zgc:114119 (LOC106588497)


Basic Information

Item Value
gene id zgc:114119
gene name LOC106588497
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 36931300 ~ 36939648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571825.2
CCATAGAAGCCGGAAGTGACGTGTTTGACAAGCTAACGCGGTTGTCTTCTTTGAAAGAGGCTGTTGAGTCGTCGGAACAACACATTTACAAATAAAACAGACACGTAGCTACGATAAGTCACAGCTGACAATTGTAAGGACACCATTTTACACCGTCCCATATGGCTACACCCTTACCTCAAAAGGGGCCTGGTCTGGCTGGTATGCTCTCCCAGCAGCAGCAGTCCCACCTGCCCCCAGGCTTAGGCCCCGGCCAGCCTCCCATGCTCCCTCAGGGAGCCCTGAGAGAGATCTCCCCTGTGTTCCTCTGTCGAATCGGTCAGGAGACCGTCCAGGACATCGTCACACGCACCATGGAGATCTTCCAGATCACACGAGCCACACAGTTGCCTAACGGGGTGACCCAGAGCCAGGCTGTGTATCAGGACCGCTTCGGGAAACTCCAGGAGCACCTCCGTCAGCTCGCCCTGCTTTTTCGCAAGCTCCGCCTTCTCTACGAGCGCTGTGTTGAGATGACCTCTGACCTGCAGGAAGAACCCTCAGAGCTGGTGCCATATGTAAGGGAGGAGATGGCCCCTGTGAGAGTGGAGCCCTGCAGTCCGGCTGTAAGCCAGGAGAGACGAGAAGTGCTGGAGAAGATGAGGCAGAAAAACCAGGAGATGAAGATTCTGATGGACCAGATGAGGAACCTGTTATGGGACGTCAACGCCATGCTGACACTCAGGAAATGATATCACAGATGAACTCTCCCTCACTGCACTTCACGATGCCCTCCCACTAGGGGCCATGGGTTTTTCCTGACCCAGAAAACTCTTGGCCCTAGTACCTCCAACCATTGTTGTACTTGTGTGAGACAGACTGCTAGAAGCTTTTGGTGATCTACCTTTACAGTATGGTGCTTTCAGAGACATTGAATGAACTGAGTTTACTACAAATGTTTTGTACTGTCagtatcttctttttttttttttttactccgaTATTATGAGTTCAGACTTGCCAAGCCTTTTTTTTGAGTGGTAAGCAACGACTCAGGACCAGCTAAATAAACTTGAAATCAGTGTTGTGAATTTTACTCAGTGCACAAAAGGCTGATCTAGTATCAGCAAAAAAATCTGCCCTTATTCTTTGTGTCCCAACTAGTGACTGTCACCTGTAAGCTGAGTTGAAGACAATGGGATCTCATCGCCACTGGCAGCTATTTATCtcaggtgtttgtgtgttttagCATTATTCTTGAGGTTAGCTTCCTGAGTGCTGGGCAACACCCCCCTGCTTACCTTAAGGGTTAAGAACCTTGCATGCCGACTGCTGTGGAAGTGTGAATCTATTTTTGTACACTGCGCATGATCTCGGAGAAAGCACAAGCAATAGGTCTTTTTCTACAAAATAAATAC

Function

NR:

description
mediator of RNA polymerase II transcription subunit 30-like

GO: NA

KEGG:

id description
K15143 MED30; mediator of RNA polymerase II transcription subunit 30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571825.2 True 1397 mRNA 0.49 5 36931300 36939648

Neighbor

gene id symbol gene type direction distance location
LOC110496120 LOC106588498 coding downstream 96240 36823864 ~ 36835060 (-)
LOC110496119 ppp1r36 coding downstream 117755 36800516 ~ 36813545 (-)
sdc2 LOC106570046 coding downstream 137903 36759185 ~ 36793397 (-)
LOC110496117 LOC106612724 coding downstream 183977 36744378 ~ 36747323 (-)
angpt1 LOC106588502 coding downstream 370587 36498812 ~ 36560713 (-)
zgc:101785 LOC106588494 coding upstream 35348 36974996 ~ 36989677 (-)
LOC110496124 LOC106588493 coding upstream 50593 36990241 ~ 37056749 (-)
prdm1b LOC106588492 coding upstream 137379 37077027 ~ 37090104 (-)
LOC110496131 borea coding upstream 799193 37738841 ~ 37744121 (-)
LOC110496132 LOC106588485 coding upstream 815369 37755017 ~ 37757210 (-)
G1544320 NA non-coding downstream 57508 36873524 ~ 36873792 (-)
G1544318 NA non-coding downstream 59042 36872029 ~ 36872258 (-)
G1544317 NA non-coding downstream 59626 36871429 ~ 36871674 (-)
G1544315 NA non-coding downstream 60733 36870333 ~ 36870567 (-)
G1544311 LOC106588496 non-coding downstream 65186 36864877 ~ 36866114 (-)
G1544372 NA non-coding upstream 5888 36945536 ~ 36945874 (-)
G1544375 NA non-coding upstream 8078 36947726 ~ 36947955 (-)
G1544378 NA non-coding upstream 9938 36949586 ~ 36949833 (-)
G1544403 NA non-coding upstream 25325 36964973 ~ 36965232 (-)
G1544405 NA non-coding upstream 26029 36965677 ~ 36966001 (-)
G1543346 LOC106588513 other downstream 918614 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 1427143 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 1434318 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 1581638 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 1751272 35151351 ~ 35203984 (-)
G1544806 NA other upstream 361860 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 982507 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 1207942 38121576 ~ 38152320 (-)
G1546053 NA other upstream 1225602 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 1620001 38557052 ~ 38563365 (-)

Expression


Co-expression Network