LOC110496809 (LOC106588491)


Basic Information

Item Value
gene id LOC110496809
gene name LOC106588491
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37132589 ~ 37141720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110496809
tacctcactctccttctcctttcaGTGGGGCGCTTGTCAGATGAGTGCGAGTACTTTGCGTATGGCCTGAGCTCCAGTGGCTCCGACTGGGTGACGGTGCACTTCCTAAAGGCTGATGACCTCTTGACGCTGCCTGATGTCCTGGACAGGGTGAAGTTCAGCTGCCTGGCCTGGACCCACGATTCCCGCGGGGTGTTTTATGATTGTTACCCCCGGCAGGGCAGCAAGGCtgatgGCACAGAGACCACATCCAACCTCAATCAGAAACTCTACAACCATGTGATCGGCACCAACCAATCAGAGGACATCCTGGTGGCTGAGTTTCCTGACCATCCAAAATGGCACAGTGGAGTAACAgTGTCGGGTGACGGCAGGTATGCAGTGCTCAACATCACAGAAGGCTGTGAGCCATTCAACCAGCTGTGGTACTGTGACCTGGAGAAGCTACCCAATGGCATCACAGACCTGCTGCCTTGGGTGAAGCTGGTGCACAACTTTGAGGCGCAGTACTCTTACATCACCAACGAGGGCAGTGTGTTCACCTTCCGCACCAACCTGGACACCCCTCGCTACTGCCTGATCAACATTGACCTGGAGACACCAAACAAGGAGCACTGGAGGACCTATCTACCCCAGCACGACAAAGACGTCCTGGGCTCTGTGGCCTGTGTGAACCAGCTCCACCTGCTGGTCAACTATGTCCATGACGTGAAGGACATCCTGCAGTTGTATGAGCTGTCCACTGGTGGTCTGGTCAGAGATCTGCCTCTGGATGTGGGCACTGTGGTGAGCCTCAGCTGTAAGAAGAAACACTCCGACTTCTTCTACAAGTTCACCTCCTTCACCACGCCAGGTGTGATTTACCACTGTGACCTGAGCCAGGCGTCTCCAGAACCCACAGTGTTCAGACAGGTGGAGGTGAAGGGTATTCAACAGGAGGACTATGAGACCAACCAGgggtTTTACCCCAGTAAGGATGGAACTAAAATCCCCATGTTCCTGGTGCACGCCCTGGGTCTTAAGAAGGACTGATCACACCCTGTCTTCCTGTACGGATATGGAGGCTTTGAGCACTCTATCCAACCATACTACAAtGTTCCATACCTGCTGTTTGTCAGACACCTGGGGGGAATCCTGGCTATAGCCAACAtctgaggaggaggggagtacgGACAGACCTGGCCCAAAGGTGGTACCCTGGGGAACAAGCAGAATTGCTTTGATGACTTCCGGTGTGCAGCAGAGTATCTGATCCAGGAGAACTACACCATAGCCAGCCGCATAGCCATCAACAGCGCCTCCAACGGGGGACTGCTCGTGGCGGCGTGTGTGAATCAGTGTCCGGACCTGTTTGGCTGTGCTGTGGCTAAGGTTGGGGTGATGGACATGCTCAAGTTCCACAAGTTTACCATCGGCCATGCCTGGACCACTGACTACGGCTGTGCAGACCACCCTGAGCAGTTCAAATGGTTCATCAAGTACTCCCCTCTCCATaacctcccccctccacctcacATTGGCGCTGCCTACCCTGCCATGCTCCTACTGACTGGTGCCCATGACGACCGGGTGGTGCCCCTCCACACCCTGAAGTACTGTGCCACACTGCAGCACGGTGTGGGCAACAGCCCCGGGCAGGCCCAGCCTCTTATGGTTCGGGTAGACACCCGCAGTGGGCACGGGGCGGGAAAGCCTACCACTAAGACAATCCTGGAGGATACACACGTCTTCTCCTTCATTGCTCAGACACTGGGGCTGAgctggagagagtgaggaggaagagaggggagtgaAGAGCTAGAGCAGTGGTcgccaaccttttctgagtcaagatcactttcggagtcaaaaagcaagccgagatctaccgcccagatttttttttaaaagatgaCTTAAAAAATGGAACATTAACCTaatcaaaacagttctgtaggaatgaggtttgtgcTGTAGGCCtagtacattatcactgcatattggctatatgcctggcctgccaatattgttcttctcagaccatattatatatatttttttaaactcaagctttgataataaaatagatcagttggtgtaGCACTTGTGAGGCAAAGCTCGCAAGTGCGAGCATAAATTGAAATAATTTTCAAAtaatttgctttttattttactggactgatgggaCCTGAATCTGATGGTCATGGTGCTATCGAGACAACTGGGTTCTCTGAAAAAAAACGAGGTCAATGAGTGATCTTCAATTCGGATTTCTAGAAAGATGTGTGAGTTTCCGACTTGGATGACCGCTCCAAACTATTTTTCCCATCCGGATCAATTTTTTtcccccagttgtcttgaacgctcGGAAGTCAAAGATTTCCGAGTTGCCTGTTGTTTTGAACTCGGCATTAGTCACatcagcagggagggagagagcagcagagggtccttcctttcctctggtgagactgaccagagaggggacacagtcttccacctgatggcgaaactcgagtccCACAACAAATGTATGTTGTTCCTATGTccaaagaaagtgaaatattcctcaataCTAATTCAAATAGACGCGATGAGCTGCTAACAGTAATAGAAACGCAGGGATATCAATACACCTGGGTAGTCATTATAGGGTGATTCTGTAACTCCTGGCATTTCTATGTCCTCGGGTACATGTTTaggatttttttttcaataataaaaATAGGTCATTTGTATGTTAAGTTCACACTACAATCACCTCAGACTTTTTTAACACCTCTCTATCAACTTATTTTGCTACTCGAACATCACTGTTTTGCCCTTGTCCCCTACCCAGACCTTTGAGCTTCTACTATGTTTTTTTCTATGAGAAAGCATAAATAATTACACATTACATGTTATCTACTAGAGAAAAGAAAGAGTCAACGAAATAAAATCTATATCAATATTTGTGAGTATGCCGTATATTGTTAGTTTTTTACACCAAAATATACCTGTCTTGGCAGTGGTGTCATTTCCATCAGAGGACAAATTCCTCATTAAGAAAGTTTTTTTCAAGAGAATGTTAATGTGGTTACCATGGACACGTATGGTGACACTGAAGCACATGGCTGCAGCAAACAGTTGTTCCAGATGTGATGTCCAAAAGTTGAAGAAAAATATGTCAGTCATTTCCAAACAGGCTATCATTTCTTTAAATTGTGGTAGAATTTTGTTTGAATGTGTACATTTGATGTATTTGGTGTAAACTATACGCTAGTTGTAATACTAGCCAAAGCATGCTGAACAGCCTGTAATTTTTCTCCAAAAACTAGAAGCCTCATTTCCATCAGTAATTTCCATCAAACTTAACTGTGGTGGAAATAAATGACAGaatgtggtggaaatg

Function

NR:

description
PREDICTED: prolyl endopeptidase-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0070008 serine-type exopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110496809 True 3370 mRNA 0.47 11 37132589 37141720

Neighbor

gene id symbol gene type direction distance location
LOC110496127 NA coding upstream 113917 37015760 ~ 37022862 (+)
LOC110496123 NA coding upstream 164610 36966379 ~ 36967984 (+)
trnaa-ugc-136 NA coding upstream 196062 36936458 ~ 36936527 (+)
ext1c LOC106588496 coding upstream 200851 36855128 ~ 36932244 (+)
med30 LOC106570051 coding upstream 938739 36135094 ~ 36197363 (+)
LOC110496810 LOC106588469 coding downstream 324071 37465791 ~ 37720841 (+)
LOC110496133 LOC106588468 coding downstream 654729 37796449 ~ 37814338 (+)
LOC110496135 LOC106588480 coding downstream 676011 37817731 ~ 37821770 (+)
psb2 psb2 coding downstream 688057 37829777 ~ 37842230 (+)
LOC110496138 LOC106588470 coding downstream 736390 37878110 ~ 37908391 (+)
G1544478 NA non-coding upstream 41384 37087258 ~ 37091205 (+)
G1544431 NA non-coding upstream 126338 37005715 ~ 37006251 (+)
G1544409 NA non-coding upstream 163828 36968504 ~ 36968761 (+)
G1544765 NA non-coding downstream 126111 37267831 ~ 37268047 (+)
G1544769 NA non-coding downstream 129061 37270781 ~ 37271107 (+)
G1544774 NA non-coding downstream 134586 37276306 ~ 37276773 (+)
G1544784 NA non-coding downstream 145736 37287456 ~ 37287695 (+)
G1544822 NA non-coding downstream 176249 37317969 ~ 37318190 (+)
G1544455 NA other upstream 76102 37055983 ~ 37056487 (+)
G1544137 NA other upstream 269406 36862923 ~ 36863183 (+)
G1544007 NA other upstream 367356 36764294 ~ 36765233 (+)
LOC110496111 LOC106588509 other upstream 1040983 36076661 ~ 36091606 (+)
G1542324 LOC106588514 other upstream 1168884 35961201 ~ 35963705 (+)
LOC110496158 LOC106588463 other downstream 1051532 38193174 ~ 38204538 (+)
G1545533 LOC104965079 other downstream 1533307 38675027 ~ 38676004 (+)
LOC110496176 LOC106588451 other downstream 1548718 38677975 ~ 38696088 (+)
G1546605 LOC106588434 other downstream 1974768 39116488 ~ 39120019 (+)
G1546641 NA other downstream 1991399 39133119 ~ 39146252 (+)

Expression

LOC110496809(LOC106588491) Expression in all Baseline Samples

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LOC110496809(LOC106588491) Expression in each Bioproject

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LOC110496809(LOC106588491) Expression in each Sample
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Co-expression Network