LOC110496131 (borea)


Basic Information

Item Value
gene id LOC110496131
gene name borea
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37738841 ~ 37744121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952659.1
AAATGACGCCAAGCGAAAGCGTATCCTCATTGGCTGGTCTCCGGCATTGTCTGCGTCTGCGTGTAAATTTGAAAATTTCGCCaactggaaagagagggaggcagcAGGACTAACCCGCTAactagaaaataaagaaaacatcGCCAGTGAGTCATGGGACGACCAAAGAGGACGACCAAACAACGTAAAAACCCCAAGTTGGACAAATTGGAGGCTTTTCTCGAAGATTTCGACAGTGAGGTTAAAACCGTCGTTGAAAGGCTGAAGGAGAAGACAAACAGCCTCCTGAAAGATGCAGACAACTTCTACAACATGGCTGTGATCAAGCTGCCAAAGGCAGTGAGACAGATGAACTGGCTTGAGCATTGTgGGTCAGAGAAACCAAAGTCACCCGTGTCACCAGTGGAGGATGCCAAGAAAGTAGAGGAGGCTGCCCAAGTGGAGAGCGTTATGGCTGAAGTCCATACTATTCCCCCCAAGACTGTTAAAAAAGCAAAGTTGAAAAGGGGTGGAGCCAGGACAAGTTCAGAGGATGAGGAGAACACTTTTACGGCCACAGGGAAGAAGTGTAAATCAACTAGGAAACCTCCAACGTCAAAGAGAGCCAAAGCACTGTCAGTCAGCAAGCGGAACTCGTCCATCAGAAAGTCCAGTAGGAAGCCACTGGTCACTCCTTCCAGGAACATGTTGGATAGTTCCCTCATGGGCCCTACCCCTCTCATCACACCACGCTTTGACTCCAGGCTTCCCACGACCCCAGCGTTGAGGATACCCCGCCACAAGGAGAGGGTTTACAGTATCTCGGTCAACGGCTCCCCCATCTCAGGAGGCGGTAATGATATCGTCATCAATGTCCCTGTGGGGAATGGAGAGTGCATTCAGCTGCTGGCCAGTCAGATGGACACTGTGGACCTGGGACAGCTGGATGAGACAGCCATGAGGAGCATCCGTCTGCTTCAGAACCGCCTCACAACACTGTGTGAATCCTCCGAATGACCTcttcagtgtttttttttgttgttgtacaagaacccccccccccccccccccaaaaaaaaaaacaattctctGTATATTTCTCTTTTAATACATAGTTGTTAATAGCTGTCAAGTCTGCTTTTGTGTAGTTATCTTAGCGCTCTTTATTGTTATGGTTTCAATGTTTTAAAATGGATGCCAAGCACATGAGACTATACTTGGAACAGGCTACTTTTCAGGGATGCAGTCTCCCATTTAAAATTAATGTCAACATTTTAAATGAGCAACATTAATAAACCCTAACTACACTTCCCCACCAA

Function

NR:

description
borealin-like

GO: NA

KEGG:

id description
K11514 CDCA8; Borealin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952659.1 True 1298 mRNA 0.47 11 37738841 37744121

Neighbor

gene id symbol gene type direction distance location
prdm1b LOC106588492 coding downstream 648739 37077027 ~ 37090104 (-)
LOC110496124 LOC106588493 coding downstream 682092 36990241 ~ 37056749 (-)
zgc:101785 LOC106588494 coding downstream 749164 36974996 ~ 36989677 (-)
zgc:114119 LOC106588497 coding downstream 799193 36931300 ~ 36939648 (-)
LOC110496120 LOC106588498 coding downstream 903781 36823864 ~ 36835060 (-)
LOC110496132 LOC106588485 coding upstream 10896 37755017 ~ 37757210 (-)
LOC110496134 LOC106511154 coding upstream 14667 37758788 ~ 37796944 (-)
LOC118941234 NA coding upstream 37248 37781369 ~ 37781447 (-)
LOC110496137 LOC106570035 coding upstream 99915 37844036 ~ 37854732 (-)
ppt1 LOC106588481 coding upstream 178032 37922153 ~ 37930745 (-)
G1545820 NA non-coding downstream 18303 37718313 ~ 37720538 (-)
G1545811 LOC106588469 non-coding downstream 25957 37712418 ~ 37712884 (-)
G1545810 NA non-coding downstream 26617 37712004 ~ 37712224 (-)
G1545809 NA non-coding downstream 28879 37709592 ~ 37709962 (-)
G1545807 LOC107592052 non-coding downstream 32103 37706273 ~ 37706738 (-)
G1545864 NA non-coding upstream 68622 37812743 ~ 37814324 (-)
G1545867 LOC106588480 non-coding upstream 74705 37818826 ~ 37820563 (-)
G1545889 NA non-coding upstream 127310 37871431 ~ 37871638 (-)
G1545890 NA non-coding upstream 129210 37873331 ~ 37873563 (-)
G1545892 NA non-coding upstream 130278 37874399 ~ 37874619 (-)
G1544806 NA other downstream 436667 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1726155 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2234684 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 2241859 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 2389179 35346895 ~ 35351655 (-)
LOC110496154 LOC106588291 other upstream 403469 38121576 ~ 38152320 (-)
G1546053 NA other upstream 421129 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 815528 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 930320 38674378 ~ 38676029 (-)

Expression


Co-expression Network