LOC110496132 (LOC106588485)


Basic Information

Item Value
gene id LOC110496132
gene name LOC106588485
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37755017 ~ 37757210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571835.2
agaaagctGAACCTGCGTTGAGGCTGAAGTGGCCCCGGCAGGCTGAGCCCTTTGTGACGAAGACACTTCAGCAGGCGGCAGCTGAGGTCTGCCACTTCATTTTCCAGGGCTTTGTTCTCCAAGACACCGTAACTCCATGTTTAAGCTGTAGCGGTGAAACTTGTTTTGCATCAACCATCAAGCTTTGGTGCATTTGGAGGCATAGTTTGGATGCACTTGGACAAAGGCCAGAATTGGACCAAGCCTTTATTTGCGCtttatcaagacatcagtctttttgttttgtttaccttCTGTGGAACCTCTTTGCTCGTGGGACTGTATCAGTTGTTTTTGCCTTCCAGCGATGGCGTACATCTTCAGCGATGTCCCTTGATCGAGTATCAGGTTCTATTGGCATGACCCATCTAGGTAAGGCCACACCAAACCTGTGGGGTAATAGACACTTTTCATGTAATCAGCTCCGCGCTTGGGTTAGTGTGAGGTTACAGGGCCAGAACTGCTGACATCCAATTGTACCCTACGCACAAACCCACTGGGTCTGATGGTGACGTCTCCGAAGCTCAATCAATCCAAAATAGGGGAGCTGCCACAAGTGGCTGCACAGTCATTGGTTCTTAAATAATGAATCATTTCAATAGATAGAGGGAGGAAAGCAATggagtcttctctccctctgccacCACCTGTCACTCCGATCACTGGGGGGAAAAACCTTGAGTTAAAAAATAAAAGCTACATTGAAGACATCTGACCAGATGTTGAAAAGAAACGGAGACATAAGAAGCTTGAGAAAGGAAAGTAATTTCGGAAAAGGACCGTGAGTGACTCAAATTCAGGATTGTGAAAGGCCCAGACAGAGCAGGCAGGTATAGCAAAGGAGTGGGCCTTGAAGTGAGAAAGAAGACATAGACAAGGGTAAAGGTCAGTTTCAGGTGGTCAGAAGACATCAAGAGCAGCCATCATGGTCAACACAGGCATGCAATTGATCAGCTTCACCTGTGCGGTAACAGGTTGGGTCATGGCCATCGCTGTGACGGCCTTGCCTCAGTGGAAGGTGTCAGCCTTCATCGGCAGCAACATCCTCACCTCCGAGATCAAGTGGGAGGGCATCTGGATGAACTGCATCTACCAGGCCACGGGCCACATGCAGTGCAAGACCTACGACTCCATTCTGGCTCTGCCCCCGGACCTCCAGGCAGCTCGTGCCCTCATGTGTGTGGCAATTTTCCTGGGCTGGCTGTCCTGCACCGTGTCCTGCTGTGGAATGAAATGCACCACGTGCGCTGGTGACGACCGCCGCGCCAAGGTAGGCATCGCCCTCTCCGGCGGTGTGCTATTCATCCTGACGGGCCTGTGCGTGCTGGTGCCCGTCTCCTGGACCGCCAACACGGTGGTCCAGGACTTCTACAACCCCAAAGTGCCTGTCATGTACAAGCGAGAGCTGGGCCAGGCGATCTACCTGGGCTGGGCATCTGCGGTTATTCTGATGATCAGCGGGGCCGTGCTGAGCAGCACCTGCCCCCATATCGAGAGCGGAGGAGGGGAGTACCGCCGGGGTTACATGGGCCGGAGCTTTCCTAACACGCGCCCCTCCCCCCTCGCACCTGATCCTCCGAAACCTATCACCTCCAACAGCGTGCCCCTAAAGGAATATGTGTAGTCCAGAGAAAAGATGTGAAGAAGAATGTCAACAGGGTTGGAGTATGGGAAGGCGCAAGGTTGAGAAGGGGAAGTAGAAGGCTGGAGAAGGAAAAACTGTGACTGACTGTAGTGGAGGTGAGGTGTTGTGACTTGGAAGGTTTTTGAAGATGTGACGCATTAGATTTGAAACTCTGCCGTTCTCTCGCGTTCTTCTACCGTGATGCATTTTGATGTACTGTAAAtatttatttcaaatgtattttgtcACGGCCTCaattttatgtttatttatatatatataattgaggCTGTTTCCATAATGCCTATCATTATCCGCCTCATGTATTCCCTTATTGACTTCATTACACATTTATTACACTGTGATATTTGGTATTAGTGCGTGGACAGATCACAATATTCTGCCTGGAAGATACATCAATCACCATAAACACCTTTAAGATATTATGATTTTGTGACTTGTGGTGTGAAGGTTGGAGTGATTTATTTCACAATTCTTCACAGATGACTATTAAATCTGTGAAATAATTCA

Function

NR:

description
claudin-7-like

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571835.2 True 2194 mRNA 0.49 1 37755017 37757210

Neighbor

gene id symbol gene type direction distance location
LOC110496131 borea coding downstream 10896 37738841 ~ 37744121 (-)
prdm1b LOC106588492 coding downstream 664915 37077027 ~ 37090104 (-)
LOC110496124 LOC106588493 coding downstream 698268 36990241 ~ 37056749 (-)
zgc:101785 LOC106588494 coding downstream 765340 36974996 ~ 36989677 (-)
zgc:114119 LOC106588497 coding downstream 815369 36931300 ~ 36939648 (-)
LOC110496134 LOC106511154 coding upstream 1578 37758788 ~ 37796944 (-)
LOC118941234 NA coding upstream 24159 37781369 ~ 37781447 (-)
LOC110496137 LOC106570035 coding upstream 86826 37844036 ~ 37854732 (-)
ppt1 LOC106588481 coding upstream 164943 37922153 ~ 37930745 (-)
LOC110496145 LOC106588474 coding upstream 220907 37978117 ~ 37992369 (-)
G1545820 NA non-coding downstream 34479 37718313 ~ 37720538 (-)
G1545811 LOC106588469 non-coding downstream 42133 37712418 ~ 37712884 (-)
G1545810 NA non-coding downstream 42793 37712004 ~ 37712224 (-)
G1545809 NA non-coding downstream 45055 37709592 ~ 37709962 (-)
G1545807 LOC107592052 non-coding downstream 48279 37706273 ~ 37706738 (-)
G1545864 NA non-coding upstream 55533 37812743 ~ 37814324 (-)
G1545867 LOC106588480 non-coding upstream 61616 37818826 ~ 37820563 (-)
G1545889 NA non-coding upstream 114221 37871431 ~ 37871638 (-)
G1545890 NA non-coding upstream 116121 37873331 ~ 37873563 (-)
G1545892 NA non-coding upstream 117189 37874399 ~ 37874619 (-)
G1544806 NA other downstream 452843 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1742331 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2250860 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 2258035 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 2405355 35346895 ~ 35351655 (-)
LOC110496154 LOC106588291 other upstream 390380 38121576 ~ 38152320 (-)
G1546053 NA other upstream 408040 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 802439 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 917231 38674378 ~ 38676029 (-)

Expression


Co-expression Network