LOC110496137 (LOC106570035)


Basic Information

Item Value
gene id LOC110496137
gene name LOC106570035
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37844036 ~ 37854732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571851.2
GACACTTTCTGACAGCGTGTCGCAGAAGCATCCTTAAACCGCACGTGCTTGAGGGTTGACACGTTGAGACATTtctaaaagaaagaaaaaaagaagctTGAGCTACTTCCTGCATGGATCTTGTAGACAGATGAAAGTAGCTTGGATTATAACTATTTGGTGACGTAGCTAAGACATTGACGGCATCCATATCCTAGACTGTGAATTTTTGGTAACCAGAAGAGATGTTAGTCCACACATATTCGGCTATGGACCGCGCAGACGGACTGACCGGCTCCTCGCCGAGTGGGCGACTGTCTCAACTCTCCTCGCTGAACCAGGCAGCGTACTCCTCGGCTCCCCCGCTTTGCCACACACCGGCCTCTGATTTCCAACCTCCGTACTTCCCCCCTCCATACCCACAGTCTTCGCTCTCATACTCCCAGAGCCAGGACTCTGCATACTCTCACTTATCGGACCCCTACAACTCCATCAACTCCATCCATCAGCATCAGCAAGCGGCATGGCACTCGCAGAGATCGCGGTCGGACGAGGGGGCGCTATTGTCACAGTCACACCGGGCTTTAAGCCTCGACCCCCGTCGGGAGTACCCCGGTGTACCCCGGCTTCTCCACGGACTCGGGGAGGGTGCCGCAGCTCTAGGAGACGGTCCTCTTGGAATGCATATTGGACATCACGGACTGGAGGACATGCAGGTGGGTTTATTTGGAATGGAGGAGGGATCAGCCTTGGGCATCCTGGACCACTCCGTCATTAAGAAAGttccCATCCCCTCCAAGTTGAACGGCTCGTCCCTGTCGGCTCTCCACCTCAGTAAGGATGGTCTAGGGATTGGTTCCGTGTCCAACCCAGGGGAGGTGTTCTGCTCCGTCCCCGGCCGCCTCTCCCTCCTCAGCTCCACCTCCAAGTACAAGGTCACCGTGGGGGAGGTGCAACGACGTCTGGCCCCGCCTGAGTGCCTGAACGCTTCCCTGTTGGGCGGAGTCCTCCGCAGggcAAAGTCAAAGAATGGCGGGCGCTGTCTGAGAGAGCGTCTGGAAAAGATCGGGCTTAATCTCCCCGCCGGGCGACGCAAGGCCGCCAACGTCACCCTCCTGACGGCTCTAGTGGAGGGTGAGGCAGTCCACCTGGCCCGTGACTTTGGGTATGTGTGCGAGACGGAGTTCCCTGCCAGAGCGACAGCAGAGTATCTGTGTAGGCAGAGTGACCCCGAGCAGCTTCCCACACGACGCAGTATGCTGCTGGCCACCAAGGATATCTGCAAGGAGTTTGTGGACCTGATGTCCCAGGACCGCTCTCCTCTGGGGGCGAGTCGTCCCAACCCCTGTCTGGAGCACGGGGTCCAGAGCAATCTCACCCACTTCAGCCTGCTCACCCACGGCTTCGGTACCCCAGCTATCTGCGCCGCCCTCTCCGCCTTCCAGAGCTACCTGGTGGAGGCCATCAAAATGCTGGACAAGGACCAGGGGGGTGGCAAGGGGCACCACGAGAAGGAGATGAAGCACCGCAAATAGTTCAACGACGTCTTTGGAGGAGAATGGGGATTGGAGGTTGACGGACGGACTGAGTTCTCAATTCCATCTTCTCGTAGCCTCCTTTATGAAGACAATGACTGAGATTTTCTTTCTGAAATTCCTGCTCTGGCCCGATCCCTCACAGGGAAGGGCGTGGTGATGTTTGTGCTGTATATGTGTCGGCCACCTCACTCAAAGACGCATGGACTTTTTCTTCTGGGCTGCTGGTTTTCTAGGCAGTGTCCATTTCTAACTGCCAATGACATTTTCTGGATGAGTTCTGGTCTTCTGTCCCTGTCTGACTGTCAAGATGATACCCCAACCTGCTTTTTTCCCCCTCTACTTCCCAAAGAGATACAACTATTTATCTCTATGCTTACTTCCCTTCAAGGTCTGTTTGACTGTCTGGACTTGGACCCACTTTGAAAACATCTCGTCACAAGAGATGAGCCATATCCATTACAACCAACTTTCTCAGTTTTGCTTGTTCCTCATCTGGACATTGGATACCGTCCAACTCCACCCCATAGGATGGGAAGTTTGTGTACTACGATTCTATGTGGGTGCTGCTGGGTAATTGAGTTTTTGGGGGTGGGCATGGGGGCGTGGTGTCAAAGGCAGCTATGGTTGAAGGGGAGGGTAGGTGTGGGTAAATTAAGAAAAACAACGAATCATTTTGTACTTACTGTGTATGTTTATTATTAATGTTATTACTGTTATAATTATTGTATTACGGCATAAATGTAATATATTATTAAAGAATAACTGATGCG
>XM_021571852.2
ATGTTAGTCCACACATATTCGGCTATGGACCGCGCAGACGGACTGACCGGCTCCTCGCCGAGTGGGCGACTGTCTCAACTCTCCTCGCTGAACCAGGCAGCGTACTCCTCGGCTCCCCCGCTTTGCCACACACCGGCCTCTGATTTCCAACCTCCGTACTTCCCCCCTCCATACCCACAGTCTTCGCTCTCATACTCCCAGAGCCAGGACTCTGCATACTCTCACTTATCGGACCCCTACAACTCCATCAACTCCATCCATCAGCATCAGCAAGCGGCATGGCACTCGCAGAGATCGCGGTCGGACGAGGGGGCGCTATTGTCACAGTCACACCGGGCTTTAAGCCTCGACCCCCGTCGGGAGTACCCCGGTGTACCCCGGCTTCTCCACGGACTCGGGGAGGGTGCCGCAGCTCTAGGAGACGGTCCTCTTGGAATGCATATTGGACATCACGGACTGGAGGACATGCAGGGAATGGAGGAGGGATCAGCCTTGGGCATCCTGGACCACTCCGTCATTAAGAAAGttccCATCCCCTCCAAGTTGAACGGCTCGTCCCTGTCGGCTCTCCACCTCAGTAAGGATGGTCTAGGGATTGGTTCCGTGTCCAACCCAGGGGAGGTGTTCTGCTCCGTCCCCGGCCGCCTCTCCCTCCTCAGCTCCACCTCCAAGTACAAGGTCACCGTGGGGGAGGTGCAACGACGTCTGGCCCCGCCTGAGTGCCTGAACGCTTCCCTGTTGGGCGGAGTCCTCCGCAGggcAAAGTCAAAGAATGGCGGGCGCTGTCTGAGAGAGCGTCTGGAAAAGATCGGGCTTAATCTCCCCGCCGGGCGACGCAAGGCCGCCAACGTCACCCTCCTGACGGCTCTAGTGGAGGGTGAGGCAGTCCACCTGGCCCGTGACTTTGGGTATGTGTGCGAGACGGAGTTCCCTGCCAGAGCGACAGCAGAGTATCTGTGTAGGCAGAGTGACCCCGAGCAGCTTCCCACACGACGCAGTATGCTGCTGGCCACCAAGGATATCTGCAAGGAGTTTGTGGACCTGATGTCCCAGGACCGCTCTCCTCTGGGGGCGAGTCGTCCCAACCCCTGTCTGGAGCACGGGGTCCAGAGCAATCTCACCCACTTCAGCCTGCTCACCCACGGCTTCGGTACCCCAGCTATCTGCGCCGCCCTCTCCGCCTTCCAGAGCTACCTGGTGGAGGCCATCAAAATGCTGGACAAGGACCAGGGGGGTGGCAAGGGGCACCACGAGAAGGAGATGAAGCACCGCAAATAG
>XM_021571850.2
CAACTAACTCACTCTTCAGTCTACCTTCAGCTCGTCTCTATCCATCCTCCTGGTATCCGCTATAACCTCCTGCTCAAACCTAACTCCAATCTCTGCAACCCAGCCGCCCTTTACAACAACGTCATCATGCTTTGGAAATCGCGAACGAAGACTGAGCCCTACTGTCTTCAGGACCGCGCAGACGGACTGACCGGCTCCTCGCCGAGTGGGCGACTGTCTCAACTCTCCTCGCTGAACCAGGCAGCGTACTCCTCGGCTCCCCCGCTTTGCCACACACCGGCCTCTGATTTCCAACCTCCGTACTTCCCCCCTCCATACCCACAGTCTTCGCTCTCATACTCCCAGAGCCAGGACTCTGCATACTCTCACTTATCGGACCCCTACAACTCCATCAACTCCATCCATCAGCATCAGCAAGCGGCATGGCACTCGCAGAGATCGCGGTCGGACGAGGGGGCGCTATTGTCACAGTCACACCGGGCTTTAAGCCTCGACCCCCGTCGGGAGTACCCCGGTGTACCCCGGCTTCTCCACGGACTCGGGGAGGGTGCCGCAGCTCTAGGAGACGGTCCTCTTGGAATGCATATTGGACATCACGGACTGGAGGACATGCAGGGAATGGAGGAGGGATCAGCCTTGGGCATCCTGGACCACTCCGTCATTAAGAAAGttccCATCCCCTCCAAGTTGAACGGCTCGTCCCTGTCGGCTCTCCACCTCAGTAAGGATGGTCTAGGGATTGGTTCCGTGTCCAACCCAGGGGAGGTGTTCTGCTCCGTCCCCGGCCGCCTCTCCCTCCTCAGCTCCACCTCCAAGTACAAGGTCACCGTGGGGGAGGTGCAACGACGTCTGGCCCCGCCTGAGTGCCTGAACGCTTCCCTGTTGGGCGGAGTCCTCCGCAGggcAAAGTCAAAGAATGGCGGGCGCTGTCTGAGAGAGCGTCTGGAAAAGATCGGGCTTAATCTCCCCGCCGGGCGACGCAAGGCCGCCAACGTCACCCTCCTGACGGCTCTAGTGGAGGGTGAGGCAGTCCACCTGGCCCGTGACTTTGGGTATGTGTGCGAGACGGAGTTCCCTGCCAGAGCGACAGCAGAGTATCTGTGTAGGCAGAGTGACCCCGAGCAGCTTCCCACACGACGCAGTATGCTGCTGGCCACCAAGGATATCTGCAAGGAGTTTGTGGACCTGATGTCCCAGGACCGCTCTCCTCTGGGGGCGAGTCGTCCCAACCCCTGTCTGGAGCACGGGGTCCAGAGCAATCTCACCCACTTCAGCCTGCTCACCCACGGCTTCGGTACCCCAGCTATCTGCGCCGCCCTCTCCGCCTTCCAGAGCTACCTGGTGGAGGCCATCAAAATGCTGGACAAGGACCAGGGGGGTGGCAAGGGGCACCACGAGAAGGAGATGAAGCACCGCAAATAG

Function

NR:

description
PREDICTED: transcription factor AP-2-epsilon-like isoform X2

GO: NA

KEGG:

id description
K09180 TFAP2N; transcription factor AP-2, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571851.2 False 2287 mRNA 0.53 7 37844036 37853817
XM_021571852.2 False 1278 mRNA 0.61 7 37844809 37853593
XM_021571850.2 True 1422 mRNA 0.60 7 37844809 37854732

Neighbor

gene id symbol gene type direction distance location
LOC110496134 LOC106511154 coding downstream 47092 37758788 ~ 37796944 (-)
LOC118941234 NA coding downstream 62589 37781369 ~ 37781447 (-)
LOC110496132 LOC106588485 coding downstream 86826 37755017 ~ 37757210 (-)
LOC110496131 borea coding downstream 99915 37738841 ~ 37744121 (-)
prdm1b LOC106588492 coding downstream 753934 37077027 ~ 37090104 (-)
ppt1 LOC106588481 coding upstream 67421 37922153 ~ 37930745 (-)
LOC110496145 LOC106588474 coding upstream 123385 37978117 ~ 37992369 (-)
LOC110496154 LOC106588291 coding upstream 266844 38121576 ~ 38152320 (-)
LOC118941154 NA coding upstream 285997 38140729 ~ 38141362 (-)
trnaa-ugc-137 NA coding upstream 441151 38295883 ~ 38295956 (-)
G1545867 LOC106588480 non-coding downstream 23473 37818826 ~ 37820563 (-)
G1545864 NA non-coding downstream 29712 37812743 ~ 37814324 (-)
G1545820 NA non-coding downstream 123498 37718313 ~ 37720538 (-)
G1545811 LOC106588469 non-coding downstream 131152 37712418 ~ 37712884 (-)
G1545810 NA non-coding downstream 131812 37712004 ~ 37712224 (-)
G1545889 NA non-coding upstream 16699 37871431 ~ 37871638 (-)
G1545890 NA non-coding upstream 18599 37873331 ~ 37873563 (-)
G1545892 NA non-coding upstream 19667 37874399 ~ 37874619 (-)
G1545879 LOC106588470 non-coding upstream 46076 37900808 ~ 37901659 (-)
G1545922 NA non-coding upstream 104453 37959185 ~ 37963415 (-)
G1544806 NA other downstream 541862 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1831350 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2339879 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 2347054 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 2494374 35346895 ~ 35351655 (-)
G1546053 NA other upstream 310518 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 704917 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 819709 38674378 ~ 38676029 (-)

Expression


Co-expression Network