ppt1 (LOC106588481)


Basic Information

Item Value
gene id ppt1
gene name LOC106588481
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37922153 ~ 37930745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952664.1
CCCTAGCTTCCCACATTTGGGAAGCTAGCGTAGcgtgctagctaacgttaactggtTTGTTATAAAAGAAAGGCACCTCCCAAACTTGTCTTTGATTTTGGGAAGCTCTCGCAGGCATATTCCATGATTTTGACAACATGGAAGACCCCTACCAAACAAGAATCGCGGCTTTAAAAGGGTTCAAGATGACCACACTTCTCCGCTTGCTCCTGGGGGCTGGCCCCCTGCTGTCACAACTTGTCCTCAGCCCCGTACATGGATCTGACAATGCCACCCTCCCATTGGTTATGTGGCATGGAATGGGAGACAGCTGTTGCAACCCTCTCAGCATGGGCTCCATAAAGAAGATGATCGAGGAAGCAATCCCTGGCATTGACGTCCTGTCCCTGATGATTGGCAAGACTGTCATTCAGGACACAGAGAATGGTTTCTTCATGGAtgtcaatgagcaggtgtccatggTGTGCAGCCAGCTGGCCCAGGATCCCAAGCTGAAGGATGGCTACAATGCCATGGGCTTCTCCCAGGGAGGGCAGTTCCTGAGGGCAGTGGCGCAGCGCTGTCCATCTCCTCCAATGAAAACCCTGATCTCTGTTGGGGGACAACAACAAGGGGTGTATGGTCTCCctagatgccctggagagagcTCCCATATCTGTGACTGGATTCGCAAGGAACTCAACTCAGGGGCCTATACCGATATTGTGCAAAAAAACTTGGTGCAGGCACAGTACTGGCATGACCCATTGAATGATGACCTGTACAAAAAACACAGCCTCTTCCTGGCTGATATCAACCAGGAGCGGGTGGTGAACGAGACTTACAAGAAGAACCTCCAACTGCTGGACAAGTTTGTGATGGTCAAGTTCTTGCAGGACAGCGTTGTTGATCCAGTTGACACCGAGTGGTTTGGTTTTCTGAAAACTGGTCAGGCGAAAGAGACCGAGACCCTTCAGGAGAGTGTCCTCTATAAAGAGGATCGTCTGGGACTGGCAGCGATGGAGGCAGCTGGGAAGCTGGATTTCCTGGCCACAGAAGGAGATCACCTTCAGTTCACCGATGAGTGGTTCAATGCCAAACTAGTGCCTTACCTGCGCTAAaaacacctagctagctacactgacaTGAGTTGACGTACGCACACATTACCATTGCACTGATCATTCCGATACCATCCTGCTGTTTAAATCAAATAATGCACTTATTTATGATTTTAAAAACTGTTTTACCCAGTTAACGTACTACCACAGAGAAATAAAGTTGGTGTTAGTTGGTTCTCAGAGATATCTATTCAAGTTTAAATGTAGGATCATTTGCTTAGCACTATATTTTGGAATAAGTGTGGTGGGTGTTTCTTCGTTAGTGTAATGGTAAATAACATGGAACTAATATGTTAAGAAATCACTGGTTCTGAACTGAGTTAATTATCAAGCTCTCCTTGTGAAAAATGACGTTTTCCCAGATAGAGCAAAACATAAGGGCTCATCATCCCCGTATTTGGCCTGCTCTTACTGTCCAGTCAGCCAATAAAGAACAATCCCCCA
>XM_036952666.1
TATAATTTACACTGAACTCTACAACACAAGATAAACTAAACTAATGTACACATCGCGCGATATGCTGCTCCGTATGATATGGAAGCTGATGATTGTTTCTCAAGTTTCTTCCGGGTAGCTAGCATGTCATGTGACAAACTGTGGCGATTCTGAAAAGGTTCAAGATGACCACACTTCTCCGCTTGCTCCTGGGGGCTGGCCCCCTGCTGTCACAACTTGTCCTCAGCCCCGTACATGGATCTGACAATGCCACCCTCCCATTGGTTATGTGGCATGGAATGGGAGACAGCTGTTGCAACCCTCTCAGCATGGGCTCCATAAAGAAGATGATCGAGGAAGCAATCCCTGGCATTGACGTCCTGTCCCTGATGATTGGCAAGACTGTCATTCAGGACACAGAGAATGGTTTCTTCATGGAtgtcaatgagcaggtgtccatggTGTGCAGCCAGCTGGCCCAGGATCCCAAGCTGAAGGATGGCTACAATGCCATGGGCTTCTCCCAGGGAGGGCAGTTCCTGAGGGCAGTGGCGCAGCGCTGTCCATCTCCTCCAATGAAAACCCTGATCTCTGTTGGGGGACAACAACAAGGGGTGTATGGTCTCCctagatgccctggagagagcTCCCATATCTGTGACTGGATTCGCAAGGAACTCAACTCAGGGGCCTATACCGATATTGTGCAAAAAAACTTGGTGCAGGCACAGTACTGGCATGACCCATTGAATGATGACCTGTACAAAAAACACAGCCTCTTCCTGGCTGATATCAACCAGGAGCGGGTGGTGAACGAGACTTACAAGAAGAACCTCCAACTGCTGGACAAGTTTGTGATGGTCAAGTTCTTGCAGGACAGCGTTGTTGATCCAGTTGACACCGAGTGGTTTGGTTTTCTGAAAACTGGTCAGGCGAAAGAGACCGAGACCCTTCAGGAGAGTGTCCTCTATAAAGAGGATCGTCTGGGACTGGCAGCGATGGAGGCAGCTGGGAAGCTGGATTTCCTGGCCACAGAAGGAGATCACCTTCAGTTCACCGATGAGTGGTTCAATGCCAAACTAGTGCCTTACCTGCGCTAAaaacacctagctagctacactgacaTGAGTTGACGTACGCACACATTACCATTGCACTGATCATTCCGATACCATCCTGCTGTTTAAATCAAATAATGCACTTATTTATGATTTTAAAAACTGTTTTACCCAGTTAACGTACTACCACAGAGAAATAAAGTTGGTGTTAGTTGGTTCTCAGAGATATCTATTCAAGTTTAAATGTAGGATCATTTGCTTAGCACTATATTTTGGAATAAGTGTGGTGGGTGTTTCTTCGTTAGTGTAATGGTAAATAACATGGAACTAATATGTTAAGAAATCACTGGTTCTGAACTGAGTTAATTATCAAGCTCTCCTTGTGAAAAATGACGTTTTCCCAGATAGAGCAAAACATAAGGGCTCATCATCCCCGTATTTGGCCTGCTCTTACTGTCCAGTCAGCCAATAAAGAACAATCCCCCA
>XM_036952665.1
ACCCTGTTGCACCTTGTAATTAAACCAACATTATTTTGATTGATGTGATCAACGACTGCTCTCCTTTTTATTTACCTGGAAATTCCCATTACAAACGGACACAGTCAAAAAAAAACATGGGCATTGGGTTCAAGATGACCACACTTCTCCGCTTGCTCCTGGGGGCTGGCCCCCTGCTGTCACAACTTGTCCTCAGCCCCGTACATGGATCTGACAATGCCACCCTCCCATTGGTTATGTGGCATGGAATGGGAGACAGCTGTTGCAACCCTCTCAGCATGGGCTCCATAAAGAAGATGATCGAGGAAGCAATCCCTGGCATTGACGTCCTGTCCCTGATGATTGGCAAGACTGTCATTCAGGACACAGAGAATGGTTTCTTCATGGAtgtcaatgagcaggtgtccatggTGTGCAGCCAGCTGGCCCAGGATCCCAAGCTGAAGGATGGCTACAATGCCATGGGCTTCTCCCAGGGAGGGCAGTTCCTGAGGGCAGTGGCGCAGCGCTGTCCATCTCCTCCAATGAAAACCCTGATCTCTGTTGGGGGACAACAACAAGGGGTGTATGGTCTCCctagatgccctggagagagcTCCCATATCTGTGACTGGATTCGCAAGGAACTCAACTCAGGGGCCTATACCGATATTGTGCAAAAAAACTTGGTGCAGGCACAGTACTGGCATGACCCATTGAATGATGACCTGTACAAAAAACACAGCCTCTTCCTGGCTGATATCAACCAGGAGCGGGTGGTGAACGAGACTTACAAGAAGAACCTCCAACTGCTGGACAAGTTTGTGATGGTCAAGTTCTTGCAGGACAGCGTTGTTGATCCAGTTGACACCGAGTGGTTTGGTTTTCTGAAAACTGGTCAGGCGAAAGAGACCGAGACCCTTCAGGAGAGTGTCCTCTATAAAGAGGATCGTCTGGGACTGGCAGCGATGGAGGCAGCTGGGAAGCTGGATTTCCTGGCCACAGAAGGAGATCACCTTCAGTTCACCGATGAGTGGTTCAATGCCAAACTAGTGCCTTACCTGCGCTAAaaacacctagctagctacactgacaTGAGTTGACGTACGCACACATTACCATTGCACTGATCATTCCGATACCATCCTGCTGTTTAAATCAAATAATGCACTTATTTATGATTTTAAAAACTGTTTTACCCAGTTAACGTACTACCACAGAGAAATAAAGTTGGTGTTAGTTGGTTCTCAGAGATATCTATTCAAGTTTAAATGTAGGATCATTTGCTTAGCACTATATTTTGGAATAAGTGTGGTGGGTGTTTCTTCGTTAGTGTAATGGTAAATAACATGGAACTAATATGTTAAGAAATCACTGGTTCTGAACTGAGTTAATTATCAAGCTCTCCTTGTGAAAAATGACGTTTTCCCAGATAGAGCAAAACATAAGGGCTCATCATCCCCGTATTTGGCCTGCTCTTACTGTCCAGTCAGCCAATAAAGAACAATCCCCCA
>TU1768955
TCTTTATCAGCTTGGTGCAGGCACAGTACTGGCATGACCCATTGAATGATGACCTGTACAAAAAACACAGCCTCTTCCTGGCTGATATCAACCAGGAGCGGGTGGTGAACGAGACTTACAAGAAGAACCTCCAACTGCTGGACAAGTTTGTGATGGTCAAGTTCTTGCAGGACAGCGTTGTTGATCCAGTTGACACCGAGTGGTTTGGTTTTCTGAAAACTGGTCAGGCGAAAGAGACCGAGACCCTTCAGGAGAGTGTCCTCTATAAAGAGGATCGTCTGGGACTGGCAGCGATGGAGGCAGCTGGGAAGCTGGATTTCCTGGCCACAGAAGGAGATCACCTTCAGTTCACCGATGAGTGGTTCAATGCCAAACTAGTGCCTTACCTGCGCTAAaaacacctagctagctacactgacaTGAGTTGACGTACGCACACATTACCATTGCACTGATCATTCCGATACCATCCTGCTGTTTAAATCAAATAATGCACTTATTTATGATTTTAAAAACTGTTTTACCCAGTTAACGTACTACCACAGAGAAATAAAGTTGGTGTTAGTTGGTTCTCAGAGATATCTATTCAAGTTTAAATGTAGGATCATTTGCTTAGCACTATATTTTGGAATAAGTGTGGTGGGTGTTTCTTCGTTAGTGTAATGGTAAATAACATGGAACTAATATGTTAAGAAATCACTGGTTCTGAACTGAGTTAATTATCAAGCTCTCCTTGTGAAAAATGACGTTTTCCCAGATAGAGCAAAACATAAGGGCTCATCATCCCCGTATTTGGCCTGCTCTTACTGTCCAGTCAGCCAATAAAGAACAATCCCC

Function

NR:

description
palmitoyl-protein thioesterase 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952664.1 False 1544 mRNA 0.47 10 37922153 37929337
XM_036952666.1 False 1523 mRNA 0.47 10 37922153 37929643
XM_036952665.1 False 1493 mRNA 0.47 10 37922153 37930745
TU1768955 True 837 TUCP 0.43 4 37922155 37923334

Neighbor

gene id symbol gene type direction distance location
LOC110496137 LOC106570035 coding downstream 67421 37844036 ~ 37854732 (-)
LOC110496134 LOC106511154 coding downstream 125209 37758788 ~ 37796944 (-)
LOC118941234 NA coding downstream 140706 37781369 ~ 37781447 (-)
LOC110496132 LOC106588485 coding downstream 164943 37755017 ~ 37757210 (-)
LOC110496131 borea coding downstream 178032 37738841 ~ 37744121 (-)
LOC110496145 LOC106588474 coding upstream 47372 37978117 ~ 37992369 (-)
LOC110496154 LOC106588291 coding upstream 190831 38121576 ~ 38152320 (-)
LOC118941154 NA coding upstream 209984 38140729 ~ 38141362 (-)
trnaa-ugc-137 NA coding upstream 365138 38295883 ~ 38295956 (-)
LOC118936476 LOC106588460 coding upstream 558125 38488870 ~ 38491346 (-)
G1545879 LOC106588470 non-coding downstream 20494 37900808 ~ 37901659 (-)
G1545892 NA non-coding downstream 47534 37874399 ~ 37874619 (-)
G1545890 NA non-coding downstream 48590 37873331 ~ 37873563 (-)
G1545889 NA non-coding downstream 50515 37871431 ~ 37871638 (-)
G1545867 LOC106588480 non-coding downstream 101590 37818826 ~ 37820563 (-)
G1545922 NA non-coding upstream 28440 37959185 ~ 37963415 (-)
G1545914 LOC106588478 non-coding upstream 28824 37959569 ~ 37965967 (-)
G1545919 rl11 non-coding upstream 38379 37969124 ~ 37974469 (-)
G1545973 NA non-coding upstream 72205 38002950 ~ 38005052 (-)
G1545942 NA non-coding upstream 96333 38027078 ~ 38027304 (-)
G1544806 NA other downstream 619979 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1909467 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2417996 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 2425171 35492995 ~ 35499681 (-)
LOC110496085 NA other downstream 2572491 35346895 ~ 35351655 (-)
G1546053 NA other upstream 234505 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 628904 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 743696 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 837352 38768097 ~ 38773684 (-)

Expression


Co-expression Network