LOC110496145 (LOC106588474)


Basic Information

Item Value
gene id LOC110496145
gene name LOC106588474
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37978117 ~ 37992369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571870.2
GACCCTGAATCACTCAAACACTGAACCACAgtccactgacagacagacagcggacagaggaaagaggaagagagagtaacCTGTGAGCGAAAATCAACAAAGCGAAAGAAAGCCAAGAGAGAAACGAGGAAAGATAAGGAAGAAgagtgagtggagagagagATCCTGTGTGCTGTCTCACTGAAACAAACCAACCCACCTACACACCGTGTCTGTCAATCTGTCCTCTTCGAACCCCTTCTGTCAGCAGTAGGAATACATAGTTAACCCTCCAGCCAGTCTAATCTGTCTGACTGTTCTTCAGTGTTTCGGTGGTTGTGTTCATCAGTAAAGAAAGTCCACCTTATCACAGTCGGTAAAGAGTCCGTTTTGTCAGTTTGTTGATTAGTTGGTCCATCAGCAAGTGAGTAAGAGTCCTCATCCCTCAGTGCTTCAGTCAGCGCTCAAGAACCAAAACCTTTAAAACCATACTGTCAAAGGAACCGTCGCCATGGCCCCCAAGAAGAAGGCCAATCGCACAAAGAAGATTACCCCGGAGCCAGTCGTCTCCCAGGTAACCACTGTCACCACACAGATGGcaggaggagtggtggtggtggaaggtGTGAAGAAGATCGAGGAGATGGCCGCACTGGACATCGTACAGCTTAACCATTTCAACCTCCCCCTGCCCCCTCCCGTCATCAAGCCCGGAGAGAAgggcctgggcctgggctgtgaAGTGACCCGCCCCCTCCACGGAAACGCCCTGCTGGAGGAGGTGAGCCGCATGCGCCAGGAGCGCTTCCTCACCGACCTGGAGCTGGCCTGTAAGACCAAGGCCTTTGACGTGCACAAGCTGGTCATTTCCTCCGTCAGCCGGTACTTCCGGGAGATCCTGGCCAAGGACCCCGGAATGAAGCGTCTAGAGTTACCTTCACTCTCCCCCCTCGGCCTGGCCAACGTGATCACCTTCGCCTACCTGGGCCGCGTCCACATGTCCCTGTACACCATCGGCTGCACTGTGTCCGCCGCTGCCACCCTACAGATCCCCCAGTTGCTCCAGATGTGCATGGACTTCCTGCTGGCCGAGATGAACGTGCAGACGTGCGTGTACGTGTGGAACATCGCCGCCGCCTACGGTCTGTTTCCCGTGCGCGACGCGGCCCGCCGCTTTGTGCTGGAGAACTTTGTCGCGTTCACCGAGACGCCCCTGTTCAACCAGCTGACCCTGGAACAGATCGCAGCCTTCCTCCAGGAAGACAGCCTGCTGCTGCCTTCTGAAGTCACCGCCTTCCAGTTGGCCATGAAATGGCTGGACTTCGACCCCAAGCGTCAGGTGCACGCCGCCGAACTGCTGTCCCACGTGCGCTTCGAGACCATCCCTGCCAGCGAGCTGGTCAGCGAGATCCAGCCTGTGGCGAGAATGATGATGGACCCTCACTGCCACCGCTTGCTGGTGGACGCCATGAACTACCACCTGCTGCCCTACCAGCAGAACACGCTGCAGTCTCGCCGCACGCAGGTGCGTGGCGGACAGGCCACCCTTCTGACTGTTGGGGGGCGTCCCTCCGTCACCGAGCGGGCACTGAGTAGAGTGGTGCTGTGGAGAGACCCACGTGAGGGTGTGGCCACCTGGCGCCACCTGTCCCAGCTGCCCGCTAAGAGCTTCAACCAGTGTGTGGCTGTGATGGACGGCTTCCTGTACGTGGCCGGAGGAGAGGACCAGAACGATGCACGCAACCAGGCCAAGCACGCTGTCAGCACCCTCAGCAGGTACGACCCTCGCTTCAACACCTGGCTGCATCTGGCTAGCATGCGCCAGCGCCGTACCCACTTCAGCCTGGTGGCCACTGGCGGGCGCCTGTATGCCATTGGCGGCCGCAACGTGGAGGGCCTGCTGGCCACCACCGAGAGCTACCTGCCCTCCTCCAACACCTGGCAGCTCAAGACACCCATGGAGGTGCCACGTTGCTGCCACGCCAGTGCCGTGCTGCCCTCCGGAGACATCCTGGTGACCGGCGGCTACATCAACTGTGCCTACTCGCGCTCCGTGGCCTGCTACAACGTTGAGACGGACACCTGGAGTGAGAAGGCTAGCCTGGCGAGCCCCCGAGGATGGCACTGCTCCTCCACCCTGGGAGGGAAGGTGTACGTGGTGGGTGGTAGCCAGCTGGGCCCCAGCGGAGACCGTGTGGACGTCCTGTCTATGGAGGTGTTCTCCCCAGAGAACGGTGAGTGGAGCCGGGCCTCCCCCCTGCCCCTGGGCGTGAGCACGGCAGGCCTGTCGGCCCTCGGGGAACAGCTGTACCTGATGGGTGGCTGGAACGAGGCCGAGAAGCGCTACAAGGCGGCCGTGCAGAAGTACACCCCGGCAACAGACAGCTGGTCCATGGGGGAGGATCTGCCCGAGGCCACTGTGGGTGTATCCTGCTGCGCCCTGACCCTCCCACCCCGCCACACCCCCCGCAGGCAACAGCACCACAACACTCCAGCAACCAAGGAGGAGCAGCCACAGAGAAAGAGCCATGTAGTCCCACAGCCCATCACTGCCTGAGAGATTTAGAagaagagaggtgaagagagcgaagggaggttgatagaagggaggagggacagagagcaaGAAGTTGAGGAGAGGTAGGAACAGAGAGCTGTCGATAGAGAAGCAGAGCCGTAGAACAGGAAAGATGGAAGGGATAACTATtcacttattctaaaattgattacatgtttgttatcatcaatctacacgcactgccccataatgacaaagcaaaaataggattttagacatttttgctaatttataaaaaatgtaatctgAAATAgcagatttacataagtattcagacc

Function

NR:

description
kelch-like protein 31

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571870.2 True 2835 mRNA 0.58 6 37978117 37992369

Neighbor

gene id symbol gene type direction distance location
ppt1 LOC106588481 coding downstream 47372 37922153 ~ 37930745 (-)
LOC110496137 LOC106570035 coding downstream 123385 37844036 ~ 37854732 (-)
LOC110496134 LOC106511154 coding downstream 181173 37758788 ~ 37796944 (-)
LOC118941234 NA coding downstream 196670 37781369 ~ 37781447 (-)
LOC110496132 LOC106588485 coding downstream 220907 37755017 ~ 37757210 (-)
LOC110496154 LOC106588291 coding upstream 129207 38121576 ~ 38152320 (-)
LOC118941154 NA coding upstream 148360 38140729 ~ 38141362 (-)
trnaa-ugc-137 NA coding upstream 303514 38295883 ~ 38295956 (-)
LOC118936476 LOC106588460 coding upstream 496501 38488870 ~ 38491346 (-)
LOC110496164 LOC106588460 coding upstream 509750 38502119 ~ 38505762 (-)
G1545919 rl11 non-coding downstream 3648 37969124 ~ 37974469 (-)
G1545914 LOC106588478 non-coding downstream 12150 37959569 ~ 37965967 (-)
G1545922 NA non-coding downstream 14702 37959185 ~ 37963415 (-)
G1545879 LOC106588470 non-coding downstream 76458 37900808 ~ 37901659 (-)
G1545892 NA non-coding downstream 103498 37874399 ~ 37874619 (-)
G1545973 NA non-coding upstream 10581 38002950 ~ 38005052 (-)
G1545942 NA non-coding upstream 34709 38027078 ~ 38027304 (-)
G1545930 NA non-coding upstream 60080 38052449 ~ 38053142 (-)
G1545937 NA non-coding upstream 66693 38059062 ~ 38061372 (-)
G1545986 NA non-coding upstream 69558 38061927 ~ 38062239 (-)
G1544806 NA other downstream 675943 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 1965431 36010987 ~ 36012686 (-)
G1543128 LOC106588245 other downstream 2473960 35452618 ~ 35504157 (-)
LOC118941140 NA other downstream 2481135 35492995 ~ 35499681 (-)
G1546053 NA other upstream 172881 38165250 ~ 38214049 (-)
LOC110496167 LOC106588455 other upstream 567280 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 682072 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 775728 38768097 ~ 38773684 (-)

Expression


Co-expression Network