LOC110496146 (LOC106588473)


Basic Information

Item Value
gene id LOC110496146
gene name LOC106588473
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 37995963 ~ 38003989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571871.2
gctgtctgtgtgggtggaccatttcagtttgtccgtgatgtgtacgccgaggaacttaaaaccttCCACCTTCTCTACGAATAATTGTTTGGccgaaatgatttgatattgagatgaaaacggctgcattggCTCTTTAATCCTCAAAGAGGTGTCTGGTTAATACTTTGTCAGCTGTTTTATTACGTAGTTCCGCCAATCTCCAAGTCAACAGTAGGCTGAGTGAAGCTGTGGAGAGGATGGCACTGACCCTATTCTGCTGTAATGAAGCAGCTTCCGGGCACAGGGCACCAGCAGTAAACATGGCGGAGGAGCTGTTGGAAGCGGTGGAGAGACTTCAGTCTCGGCTCTGCGAGAATTTAGAGCCTCGCAAGCTCCAGAAGACCCTCAAACGGCTGGGGGAGCTGCCTATGACTGTGGATATCCTTGTGGAAACTGGAGTAGGAAAAACTGTGAATTCGTTCCGGAAACATGATCTTGCTGGAGATCTTGCGAAGAGCCTTGTGGCCAAGTGGAAGAAACTGGTTCCCACCCCGTCTGCTGAAAGACCCGGCAACGCCAAGGACGTACGGACACATGCGCACCCTCACAGCTCTGAGGGAAGGGACGTAAGCCACAAACGTGTCCGGGAACTATCCCCAGAGGAGCCTCCtcatgtagaggaggaggatgaagaggaggagatgatgatagaggaggaagaggaaagaggCTACCGCACCAActactccccctccccccctcagcACCACTACAGCCCCCCACAGCTCAGCCACGGTGGCCAACGAGTGGGATACCAGTCTGAGGGCTACGAGAGCCCCATGGAGGAAGAGCCAGAGCCCGCGCCCAGCCTCCTTCACAAAGAGGTCCGACACACCAAACCACACAAAGAGCCTGGCAGGGAGCATCACGGTTCCCACGGCGACCGGGACGAGGAGAGGCGGCGACGTCATGTCCAGGCGGGCGGTGGTGGCGGTGGCGAAGGGAAGAAGCGCAGCGCGGAGAGGGAACCGCAGCACACTGGCAAGGCCTCCAAGCACAGTCGGCACTCCACCCCGCACGAGAGTAAGAGGGACAAGAGAGGTGGAAGTGATGGGAGGTCACGTGAGCCTAGGGACTCCCCTGTATTAGTCCaagtgactgaggagcaggcagaagAGGCATTTGATACCCCCACCATGTCGTTTGAATCCTTCCTCACATATGACGCCCCTACGCCcactaagaagaagaagaagcccgGCAGCAGCAGTCGGCCCtcctcccaccaccacacacctCCTCGTCCGCCTGTCCTGCCCTCGCCTGCTGCTCCTTCCTCCTCCAAGGAGTCCAAGCCCAGCAAGGCCAACGGGAGCCGCAGTAAAAGGGCTGATCCAGCCCAGAACCCGACAGCAACGACTCCGGTGCCTGAGAAACGCCGGAAGGTGGTCGAGGTTGTGTCCACGCTTCCTGATATCTCTCTGCCAGCCATCCAGCCTTTCTACAGACCTCTGCCTTCCATTGATCTCACACCGTTGTCTCCTCAGCGGCGTAAAGGTCCTGTGTCAAATGACGCCGAGGAGGACACCGGCTTCACTGGGAGACGCTTTAACTCTAAAATGACGGTCTACTCGGGTTCAAAGACGTCCTATCTGCCCAAGATGATGAGTCTGTACGAGCAGTGCATCCGGGTGCTTCAAAACAACATTGACTCAATTGATGAGGTGGGAGGTGTGCCATTTGAGATTCTGGAACCAGTACTAGAGCGATGCACCCCAGAACAGCTTTACCGCATTGAGCAGTGCaatcagTGTTTTATGGAGGACTCTGATGAGCTTTGGCATCGCCACTGCCAGCGGGACTTCAAGCGTGAGACGCCCCAGGAGTACGAGTCGTGGCGGGAGATGTACCTGCGGAAGCACGACGAGCGGGAGGAGCGCCTTCGCAAGCTCACCCAGAACATCAGTTCGGCCCATGCCAACAAGCCCAAAGGTCGACAGGTTAAAATGGCATTTGTGAACTCTGTCGCCAAACCTCCGCGTGATGTCCGCCGGCGACAGGAGAAGTTTGGCACCACAAGCACCTCCACTGCCAGCTCCACCGCAGCTGCAGCTCCGATCAAaataaggccagCCTTGTCGTATAGCTCTCACTCGGATGAGCCCAGCCACTCCTCCTCTCACGACAGTCCCCCTGAGACCTCTCGCTCCTCAGGCCCCAGCGTTGGCCCCAGCGCCAGAGACAACAAACCACAGGTCAAAAAAATCGCCCCCATGATGGCCAAAACTATCAAAGCTTTCAAGAACAGATTCTCCCGCcgatagagctagagagagatgaATGTATGACGTgattgagaggagaggaagagattgTAGGAGCTAAGATCTTTTTAATTCAATGAATTATGGGTAATCTACAAATGCCCACCAgacatgtgcacacacatacagtcgtggccaaaagttttgaaaatgaatatacattttcaaagtttgctgcttcagtgtctttagatatttttgtcagatgttactatggaatactgaagtataattacaataatttcataagtgtcaaaggcttttattgacaattacatgaagttgatgcaatgAGTCAATATTTGAAGTGATGagccttctttttcaagacctctgcaatctgccctggcatgctgtcaattatctTCTGggacacatcctgactgatggcagcccattcttgcataatcaatgcttggagtttgtcagaatttgtggggttttgtttgtccacccgcctctttaggattgaccacaagttctcaatgggattaataaggtctggggagtttcctggccatggacccaaagtATCGGTTTTGTTCCCtgggccacttagttatcacttttaccttatggcaaggtgctccatcatgctggaaaaggcattgttcatcaccaaactgctccttgatggttgggagaagttgctctcagaggatgtgttggtaccattctttattcatggctatgttcttaggcaaaattgtgagtgagcccactcccttggttgAGAAGCatccccacacatgaatggtctcaggatgctttactgttggcatgacacaggactgatggtagcgctcaccttgtcttctccagacaagcttttttggGATGCCCCAAAAAATcgaaaaggggattcatcagagaaaatgactttgcctcagtcctcagcagtccaatccctgtaccttttgcagaatatcagtctgttcctgatgtttttcctggagagaagtggcttctttgctgcctt

Function

NR:

description
elongin-A-like

GO: NA

KEGG:

id description
K15076 ELOA, TCEB3; elongin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571871.2 True 3285 mRNA 0.52 12 37995963 38003989

Neighbor

gene id symbol gene type direction distance location
rl11 LOC106570028 coding upstream 21491 37971439 ~ 37974472 (+)
LOC110496144 NA coding upstream 24997 37967046 ~ 37970966 (+)
LOC110496142 LOC106588478 coding upstream 29996 37962097 ~ 37965967 (+)
LOC110496143 LOC100136525 coding upstream 34053 37958328 ~ 37961910 (+)
si:ch1073-513e17.1 LOC106588475 coding upstream 56734 37929619 ~ 37939229 (+)
pithd1 pithd1 coding downstream 1702 38005691 ~ 38008782 (+)
LOC110496147 LOC106588484 coding downstream 4959 38008948 ~ 38020224 (+)
LOC110496149 LOC100136012 coding downstream 25184 38029173 ~ 38057722 (+)
LOC110496152 LOC106588467 coding downstream 60581 38064570 ~ 38087903 (+)
LOC110496153 LOC106588466 coding downstream 94674 38098663 ~ 38107458 (+)
G1545205 NA non-coding upstream 118076 37877647 ~ 37877887 (+)
G1545204 NA non-coding upstream 118826 37876906 ~ 37877137 (+)
G1545203 NA non-coding upstream 119261 37876484 ~ 37876702 (+)
G1545197 NA non-coding upstream 134676 37861087 ~ 37861287 (+)
G1545195 NA non-coding upstream 138852 37856883 ~ 37857111 (+)
G1545229 NA non-coding downstream 20981 38024970 ~ 38025201 (+)
G1545149 NA non-coding downstream 47119 38051108 ~ 38053166 (+)
G1545242 NA non-coding downstream 90973 38094962 ~ 38095210 (+)
G1545258 NA non-coding downstream 117604 38121593 ~ 38132628 (+)
G1544455 NA other upstream 939476 37055983 ~ 37056487 (+)
G1544137 NA other upstream 1132780 36862923 ~ 36863183 (+)
G1544007 NA other upstream 1230730 36764294 ~ 36765233 (+)
LOC110496111 LOC106588509 other upstream 1904357 36076661 ~ 36091606 (+)
G1542324 LOC106588514 other upstream 2032258 35961201 ~ 35963705 (+)
LOC110496158 LOC106588463 other downstream 189263 38193174 ~ 38204538 (+)
G1545533 LOC104965079 other downstream 671038 38675027 ~ 38676004 (+)
LOC110496176 LOC106588451 other downstream 686449 38677975 ~ 38696088 (+)
G1546605 LOC106588434 other downstream 1112499 39116488 ~ 39120019 (+)
G1546641 NA other downstream 1129130 39133119 ~ 39146252 (+)

Expression


Co-expression Network