pithd1 (pithd1)


Basic Information

Item Value
gene id pithd1
gene name pithd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38005691 ~ 38008782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571875.2
TCCATCTTGATTGGCTATTAACGTACATGTGGTTTTGAAAGGTTTCCTCTCCAGAATGTTGTGGAAAAGTGAAACCAGCCAGGTCAGTCTGAAACAAACAACTTAGCTAGTTCGACAGCTCCTATCATCACCAGCTAGGACGTACATTTCTCTAAAGTGCGATATTTAGTACCTGTGATGTCTGGTCACGGCCATGGTGGGCACAGCCACGGCTGCTGTGAAGACGAGCATGAGCCAGCGGAACGGGGCCTGGAGTATGCACTGTATCAGCGCATTGACATCGAGAAACTGCAGTGTCTCAACGAAACAAGAGAAGGCGATGGGAAACTCGTGTTTAAACCATGGGATCAACGGACTGACAGGGAGAAGTTTGTTGAGAGTGATGCTGATGAAGAGCTCCTGTTCAACATCCCGTTCACTGGAAGTGTCAAGCTGAAAGGGATAATCCTCGCCGGTGAAGACGATGAATCGCATCCTGCTGAAATGAGACTGTACAAGAACATACCCCAAATGTCCTTTGATGACACAGGCAGAGAACCTGAACAAGCCTTCCGTCTCAATAGAGATCCACTGGCTCAGCTGGAATACCCAACTAAGATTGCCCGTTTCTCCAACGTTAATCACTTGTCCATTCACATATCACGGAACTTTGGGACAGAGTCCACACGGGTCTACTACATTGGGCTGAGAGGGGAGTACTCCCAGGCTCACAGACATGAAGTGACTATCTGCAACTACGAGGCGTCCGCTAACCCTGCAGACCATAAAGTCGACAGCATCATCCCACAAACAAATTTCATCtcctgagagaaaggaggggtgGGAAAGTTGCATTGACAGATATGGGTCAAAAGGAAGTGGTGATGGATACTTAGGCCTGGTGGGTGAACTTTCTTATTGGAGGTCAGGTATGACTAATACTGAATATCAGTGTCTAATCTGGATTTGCTCAGTTGTTGCACTTATTGTACCACAAACAGTGGAGGCTGAAAGAAGTGAGTCAGTTTTCATTTGGGTAATGACTACATTTAACGCAACTCACTGGCAACCCTGTGATAAAAGCACTGAAGCTTTTGATGCTTTATCTAAAATATATCTGGATACTGTGCCGCCTAGTGGTTTGTTGTAATATGACAACTTGTCTCAGCAAAACTGGAACGACTCCAATGTCACCTGCAGTGGGAGAGCACTCATATTCTTTCTCATCCAAGCTCTGAATGGCTTAGCAATAATGTGAACATTTTGACACAACCAAAGTAGATCAGCATAAGGTTTTCATTTGAATAGTTTAGATTTGACCCATATACCCAAGTGACTTGCTCACTATACCACACAGCTTCCTTTGACACTCACCAAACACAAAAGCTGTTAACTCTGATTTCATTGCATTATTAATGAGCTGTCACATTGCTGCCAATGGCTGAATGTGATTGCTTTGTGCGACATGTTGGGAATTTGAGGAAAATGCTGTATGCCTAGTGTAAGGAATAGAAAATGCCCTCTGCTGTTGTGTGTGATGTAATTATTTGAAGAATAAAGATGTTATACATAAGA

Function

symbol description
pithd1 Predicted to be involved in positive regulation of megakaryocyte differentiation and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PITHD1 (PITH domain containing 1).

NR:

description
PITH domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571875.2 True 1554 mRNA 0.44 6 38005691 38008782

Neighbor

gene id symbol gene type direction distance location
LOC110496146 LOC106588473 coding upstream 1702 37995963 ~ 38003989 (+)
rl11 LOC106570028 coding upstream 31219 37971439 ~ 37974472 (+)
LOC110496144 NA coding upstream 34725 37967046 ~ 37970966 (+)
LOC110496142 LOC106588478 coding upstream 39724 37962097 ~ 37965967 (+)
LOC110496143 LOC100136525 coding upstream 43781 37958328 ~ 37961910 (+)
LOC110496147 LOC106588484 coding downstream 166 38008948 ~ 38020224 (+)
LOC110496149 LOC100136012 coding downstream 20391 38029173 ~ 38057722 (+)
LOC110496152 LOC106588467 coding downstream 55788 38064570 ~ 38087903 (+)
LOC110496153 LOC106588466 coding downstream 89881 38098663 ~ 38107458 (+)
LOC110496156 LOC106588465 coding downstream 145063 38153845 ~ 38159055 (+)
G1545205 NA non-coding upstream 127804 37877647 ~ 37877887 (+)
G1545204 NA non-coding upstream 128554 37876906 ~ 37877137 (+)
G1545203 NA non-coding upstream 128989 37876484 ~ 37876702 (+)
G1545197 NA non-coding upstream 144404 37861087 ~ 37861287 (+)
G1545195 NA non-coding upstream 148580 37856883 ~ 37857111 (+)
G1545229 NA non-coding downstream 16188 38024970 ~ 38025201 (+)
G1545149 NA non-coding downstream 42326 38051108 ~ 38053166 (+)
G1545242 NA non-coding downstream 86180 38094962 ~ 38095210 (+)
G1545258 NA non-coding downstream 112811 38121593 ~ 38132628 (+)
G1544455 NA other upstream 949204 37055983 ~ 37056487 (+)
G1544137 NA other upstream 1142508 36862923 ~ 36863183 (+)
G1544007 NA other upstream 1240458 36764294 ~ 36765233 (+)
LOC110496111 LOC106588509 other upstream 1914085 36076661 ~ 36091606 (+)
G1542324 LOC106588514 other upstream 2041986 35961201 ~ 35963705 (+)
LOC110496158 LOC106588463 other downstream 184470 38193174 ~ 38204538 (+)
G1545533 LOC104965079 other downstream 666245 38675027 ~ 38676004 (+)
LOC110496176 LOC106588451 other downstream 681656 38677975 ~ 38696088 (+)
G1546605 LOC106588434 other downstream 1107706 39116488 ~ 39120019 (+)
G1546641 NA other downstream 1124337 39133119 ~ 39146252 (+)

Expression


Co-expression Network