LOC110496157 (LOC106588464)


Basic Information

Item Value
gene id LOC110496157
gene name LOC106588464
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38159693 ~ 38189735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571892.2
TGTTCCATGTTGGTAGCCGCACAGGGTTTTCCTCCGTCAGCGAGCAAAGAAGCAAGCTGCGAAGATTATTCTGTTGCGCTCCAAATAGGGGACGGGGTCACAGCTGTATTGTATATTCAGTCTacacgcatatatatatatatatatagtccatTGATATTTTAGGAATGGTGTCAGGTCCCGTATTGGAGGCTGAGATGAAATAGCCTGGACAAAACGAGGACTTCAACACGCCCAAAGCAATCGATCAATGCGCATCGCCACTCACGGGAGAAGACTCACAACGGGTACCAGAAAACGGTCTCATACTACCCCGAGACGGTTgattgagagagtgagagacacacacagaagagaagaggagaagaaaaagagagaaaaaggactACAGAAGAAAATTGGACCGGAGCAACCACCAAGAAGGATTTAAGACATTTTGAATAACCCCCAAGAAGTTGTTCTATACATTTTATAACGTTCCTCTATGTTTTTTTCCTCCTCGTCTGAATTGAGAACCATTTACTAAGGAGTGACAGTGACGTTTCCTGTTGTATTCATTCTCCTCTTTGTGGTTTACAGTAACAGTTTACTGTAATTTTGGACCCCTATGTTGGTTTGGACAAAAGCACACCTGTGACTTTTCTCACACTCTTGATTTGGAGCAACTGAGTGTGAGAGGTGTGAAAGCCAGCGGGAGGGAAGGGGAATTTTGGCTATttgtgtctttctctttctcttttgtcTTCTCACCTATCGTTCCATTTGTGGGTTTAAGAGGAAGAGGAAAAAGAGTTTACAACTGGGTATCAGCGACATTCCGTTCTGGTTTCACCCGAGCACAAGTACTCccgtgtgagtgtgtttgtgttagtgtgtgtgaggcAAGCTTCCTCACGGTGATATAAGACTAATAAGAGCGGAAAAGGAAAGACGCTACCGTGAGTCACTTTCTGGGAAAATGGGATCGGAAAGGGACTCGGAATCCCCCCACTCCTCGGTGAGCGGCATTCCCAACCCCAAATGCCGGGCACCGAGAAAACGCCAAGGACGCATCTCCTTCCACAGCCTCTTCCACAGCAAACGGGGTTCCCGGAGCGCCAAAGCAGGGGCAGCCACCCCTTTATCCCAGCTCCACAACCaacagcatcaacaacaacaacttgCCCCCCTTGTTCCCCCTGTAGTCCCTTCCACACCCGACCCAGCCCCTACGAACACTGCCACGGATGTTCCCCAGGGCCCAGCCACCGCTCAGACCTCCACCCCAGCAGAGCCCCTCTCTTCCAGCCGGACCTCCCTGGGTCCCCCCCAGTCCTCCAGCTCCACCACCTccagctcctctcctccagcagacTTCCTGGAGTGCCCCCTGTGCCTGGTGCCCCAGCCCCCCGAACAGCTCCCCGAGCTGCTGGGCTGCAGCCACCGCTCCTGCCTGTGCTGCCTGCGCCAGTACCTGCGCATCGAGATCACGGAGAGCCGCGTCCATCTCAGCTGCCCCGAGTGCTCGGAGCGCCTGGCGCCTCATCAGGTGGCGGACATCTTGGGCGACGCAGCCCTGCTGGAGAAGTATGAGGAGTTCCTGCTGCGACGCTGCCTGGCCTCCGACCCGGACTGCCGCTGGTGTCCCGCGCCCGACTGCGGGTTTGCAGTGATCGCTTCGGGCTGTGCCAGCTGCCCCAGGCTGGTGTGTCGTAGAGAGGGCTGCTTGGCTGAGTTCTGTTACCACTGCAAGCAGGCGTGGCACCCCAACCAGACCTGTGACTCGGCCCGCCAGCAAAGGGCATTCTTCCTGCACCCGCATAGCAACCACTCACCCAGCTACATGCAGGAGCACGGGCCTGCTGATGACATCAAGCCCTGCCCACGATGTGGCGCCTACATAATCAAGATGAACGACGGCAGCTGTAACCACATGACCTGTGCCGTGTGCGGCTGTGAGTTCTGCTGGCTCTGCATGAAGGAGATCTCTGACCTGCACTACCTCAGtCCATCAGGGTGTACGTTCTGGGGAAAGAAGCCGTGGACTCGTAAGAAGAAGATCCTGTGGCAGCTGGGCACACTGATCGGAGCCCCAGTGGGCATCACCCTCATTGCTGGTATCGCTGTGCCTGCCATGGTCATTGGCCTCCCCGTCTATGTGGGGCGCAAGATTCACGCCCATTATGACGGGATGAAGACCAATCGCCACAGGAGGAACCTGGCCATCACAGGGGGAGTGGCCCTGTCAATCGTCACAGCTCCTGTGATTGCAGCCGTCAGCGTGGGTATTGGTGTGCCCATCATGTTGGCGTATGTCTATGGAGTTGTGCCCATCTCTCTGTGCCGCGGAGGAGGCTGTGGCGTCAGCCGAGGAAAGGGGCGTGGCATGCGGATCGACTTTGACGAGGACGATGGCCCTATCACAGTGGCTGATGCTTGGCGGGCCCTCAAGTCCCCCAGCCTGGGTGAGAGCAGCCTGGAGGGGGCAGCCAGCGGCCTCAGCACCACCTCCCCCAGCGATGGTCTCTCTGTGGCCCCTGGGGTCCTGGGGGACACCCCCCACTTTAACACTTTGGCCGGGGGCGCCCTTGGAGCCAGGACTGGCAAATACAACAGGTTGGAGCTCCAGGGAGGGGAGTTGGGGAAGGATGGtgcccagagagagacaggtagtctgggAGCGGGTAGTGACTGTGCCAGCACCCGGGGCATGGCAGGCTCCATTATCTCCTCCTACACACTACCTGACAGGGACTGTAATAACCTGGAGATCCAGGTGGACATCGAGACTAAACCCAGCCACCTCTGCTTGACCAGTGAGGAAGACCTAAACACGCCCCCTGCTGCTATGGCAGCATGCCCTGGCTCAGGGGGGGAGGAGCCTCAGGACTGCAGCTCCAGAAGGGGCGGGGCTCTGTTTGGCTCAGCACTAGGCCTATCTCCAGGGGCGTCGCTCAGGGAGGGGCTTCGCGATGTCACTTTGGCCCAGCCCGAGAGCATCCGCAGCGACTTGGAGATGTCCGATACCCAATCAGACGACATCGCCGAGCTGACGTCAGACGACTGTGATTCGCCTCATCTCAAAAGCTGCCGGCCCTCTCAACCCCAGGCCACCTGCAGACCCCTTGTCACCTCCGACAGCCTGCACTGTCCCCCGGATAACGTCATCCTCTATGTTTAAGAGTCCGACTGTCTTTGAGAGCTCTCTAAGATTGCACAAAtccaaaatgtttttgttttagctTTTCTCCATTGATTGATTGAGCGTTTCAGTCATTTTTTTTGCTGCTTTTTTTGTTTACAAAACATCTGACCTGCAGACAACACCTATCTACACGTGTCTGTCTTTCTATCAACATGTCGATCTCCTTGCAGAGAATTGGCAGGGTTCTACCTCTCTGAGATTTAATACAACAATTTTTGTTTACTTCTTGGTGCAAAAATGCCTTGGCTACTTaagcaaacttttttttttaaacaagacgTACAAATTTGCCACAagaaatactgcaaaaaaaaaaaaaa
>XM_036952676.1
TGTTCCATGTTGGTAGCCGCACAGGGTTTTCCTCCGTCAGCGAGCAAAGAAGCAAGCTGCGAAGATTATTCTGTTGCGCTCCAAATAGGGGACGGGGTCACAGCTGTATTGTATATTCAGTCTacacgcatatatatatatatatatagtccatTGATATTTTAGGAATGGTGTCAGGTCCCGTATTGGAGGCTGAGATGAAATAGCCTGGACAAAACGAGGACTTCAACACGCCCAAAGCAATCGATCAATGCGCATCGCCACTCACGGGAGAAGACTCACAACGGGTACCAGAAAACGGTCTCATACTACCCCGAGccTCCTGCACTCAAAGGCTACTACTGGAATCATAATCAGATTTGCCTTGTCATAGACCTTGTCATAGACCAGGCATACTTTAGGAGGAGGGAAACAGGCCAGAACACAGTAATGAAGCTGTTatgactcagtgtgtgtgtgcttagaaGTGCGCATCGTCATGGCAACCGCAGTAGAAGCGCAGTGTGAAGTGGAGAGCAGCTtgcgacgtgtgtgtgtgtgtgtgtgtgtgtgagagagagggtttcATATTGAcggagagagacaaaggagaagagcggatgagagaaagagaaggaatgagaggaTAAATAATATAGGAGCTAATTGGACGGATGAATAAGTTTGCTTCCTCTTCAAGACACATTATGTCATCATCATtaACGGTTgattgagagagtgagagacacacacagaagagaagaggagaagaaaaagagagaaaaaggactACAGAAGAAAATTGGACCGGAGCAACCACCAAGAAGGATTTAAGACATTTTGAATAACCCCCAAGAAGTTGTTCTATACATTTTATAACGTTCCTCTATGTTTTTTTCCTCCTCGTCTGAATTGAGAACCATTTACTAAGGAGTGACAGTGACGTTTCCTGTTGTATTCATTCTCCTCTTTGTGGTTTACAGTAACAGTTTACTGTAATTTTGGACCCCTATGTTGGTTTGGACAAAAGCACACCTGTGACTTTTCTCACACTCTTGATTTGGAGCAACTGAGTGTGAGAGGTGTGAAAGCCAGCGGGAGGGAAGGGGAATTTTGGCTATttgtgtctttctctttctcttttgtcTTCTCACCTATCGTTCCATTTGTGGGTTTAAGAGGAAGAGGAAAAAGAGTTTACAACTGGGTATCAGCGACATTCCGTTCTGGTTTCACCCGAGCACAAGTACTCccgtgtgagtgtgtttgtgttagtgtgtgtgaggcAAGCTTCCTCACGGTGATATAAGACTAATAAGAGCGGAAAAGGAAAGACGCTACCGTGAGTCACTTTCTGGGAAAATGGGATCGGAAAGGGACTCGGAATCCCCCCACTCCTCGGTGAGCGGCATTCCCAACCCCAAATGCCGGGCACCGAGAAAACGCCAAGGACGCATCTCCTTCCACAGCCTCTTCCACAGCAAACGGGGTTCCCGGAGCGCCAAAGCAGGGGCAGCCACCCCTTTATCCCAGCTCCACAACCaacagcatcaacaacaacaacttgCCCCCCTTGTTCCCCCTGTAGTCCCTTCCACACCCGACCCAGCCCCTACGAACACTGCCACGGATGTTCCCCAGGGCCCAGCCACCGCTCAGACCTCCACCCCAGCAGAGCCCCTCTCTTCCAGCCGGACCTCCCTGGGTCCCCCCCAGTCCTCCAGCTCCACCACCTccagctcctctcctccagcagacTTCCTGGAGTGCCCCCTGTGCCTGGTGCCCCAGCCCCCCGAACAGCTCCCCGAGCTGCTGGGCTGCAGCCACCGCTCCTGCCTGTGCTGCCTGCGCCAGTACCTGCGCATCGAGATCACGGAGAGCCGCGTCCATCTCAGCTGCCCCGAGTGCTCGGAGCGCCTGGCGCCTCATCAGGTGGCGGACATCTTGGGCGACGCAGCCCTGCTGGAGAAGTATGAGGAGTTCCTGCTGCGACGCTGCCTGGCCTCCGACCCGGACTGCCGCTGGTGTCCCGCGCCCGACTGCGGGTTTGCAGTGATCGCTTCGGGCTGTGCCAGCTGCCCCAGGCTGGTGTGTCGTAGAGAGGGCTGCTTGGCTGAGTTCTGTTACCACTGCAAGCAGGCGTGGCACCCCAACCAGACCTGTGACTCGGCCCGCCAGCAAAGGGCATTCTTCCTGCACCCGCATAGCAACCACTCACCCAGCTACATGCAGGAGCACGGGCCTGCTGATGACATCAAGCCCTGCCCACGATGTGGCGCCTACATAATCAAGATGAACGACGGCAGCTGTAACCACATGACCTGTGCCGTGTGCGGCTGTGAGTTCTGCTGGCTCTGCATGAAGGAGATCTCTGACCTGCACTACCTCAGtCCATCAGGGTGTACGTTCTGGGGAAAGAAGCCGTGGACTCGTAAGAAGAAGATCCTGTGGCAGCTGGGCACACTGATCGGAGCCCCAGTGGGCATCACCCTCATTGCTGGTATCGCTGTGCCTGCCATGGTCATTGGCCTCCCCGTCTATGTGGGGCGCAAGATTCACGCCCATTATGACGGGATGAAGACCAATCGCCACAGGAGGAACCTGGCCATCACAGGGGGAGTGGCCCTGTCAATCGTCACAGCTCCTGTGATTGCAGCCGTCAGCGTGGGTATTGGTGTGCCCATCATGTTGGCGTATGTCTATGGAGTTGTGCCCATCTCTCTGTGCCGCGGAGGAGGCTGTGGCGTCAGCCGAGGAAAGGGGCGTGGCATGCGGATCGACTTTGACGAGGACGATGGCCCTATCACAGTGGCTGATGCTTGGCGGGCCCTCAAGTCCCCCAGCCTGGGTGAGAGCAGCCTGGAGGGGGCAGCCAGCGGCCTCAGCACCACCTCCCCCAGCGATGGTCTCTCTGTGGCCCCTGGGGTCCTGGGGGACACCCCCCACTTTAACACTTTGGCCGGGGGCGCCCTTGGAGCCAGGACTGGCAAATACAACAGGTTGGAGCTCCAGGGAGGGGAGTTGGGGAAGGATGGtgcccagagagagacaggtagtctgggAGCGGGTAGTGACTGTGCCAGCACCCGGGGCATGGCAGGCTCCATTATCTCCTCCTACACACTACCTGACAGGGACTGTAATAACCTGGAGATCCAGGTGGACATCGAGACTAAACCCAGCCACCTCTGCTTGACCAGTGAGGAAGACCTAAACACGCCCCCTGCTGCTATGGCAGCATGCCCTGGCTCAGGGGGGGAGGAGCCTCAGGACTGCAGCTCCAGAAGGGGCGGGGCTCTGTTTGGCTCAGCACTAGGCCTATCTCCAGGGGCGTCGCTCAGGGAGGGGCTTCGCGATGTCACTTTGGCCCAGCCCGAGAGCATCCGCAGCGACTTGGAGATGTCCGATACCCAATCAGACGACATCGCCGAGCTGACGTCAGACGACTGTGATTCGCCTCATCTCAAAAGCTGCCGGCCCTCTCAACCCCAGGCCACCTGCAGACCCCTTGTCACCTCCGACAGCCTGCACTGTCCCCCGGATAACGTCATCCTCTATGTTTAAGAGTCCGACTGTCTTTGAGAGCTCTCTAAGATTGCACAAAtccaaaatgtttttgttttagctTTTCTCCATTGATTGATTGAGCGTTTCAGTCATTTTTTTTGCTGCTTTTTTTGTTTACAAAACATCTGACCTGCAGACAACACCTATCTACACGTGTCTGTCTTTCTATCAACATGTCGATCTCCTTGCAGAGAATTGGCAGGGTTCTACCTCTCTGAGATTTAATACAACAATTTTTGTTTACTTCTTGGTGCAAAAATGCCTTGGCTACTTaagcaaacttttttttttaaacaagacgTACAAATTTGCCACAagaaatactgcaaaaaaaaaaaaaa

Function

NR:

description
E3 ubiquitin-protein ligase RNF19B

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11973 RNF19B; E3 ubiquitin-protein ligase RNF19B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571892.2 False 3507 mRNA 0.55 9 38159693 38189735
XM_036952676.1 True 3890 mRNA 0.54 11 38159693 38189735

Neighbor

gene id symbol gene type direction distance location
LOC110496156 LOC106588465 coding upstream 638 38153845 ~ 38159055 (+)
LOC110496153 LOC106588466 coding upstream 52235 38098663 ~ 38107458 (+)
LOC110496152 LOC106588467 coding upstream 71790 38064570 ~ 38087903 (+)
LOC110496149 LOC100136012 coding upstream 101971 38029173 ~ 38057722 (+)
LOC110496147 LOC106588484 coding upstream 139469 38008948 ~ 38020224 (+)
LOC110496158 LOC106588463 coding downstream 3439 38193174 ~ 38204538 (+)
LOC110496159 LOC106588461 coding downstream 17908 38207643 ~ 38481331 (+)
LOC110496162 LOC106588459 coding downstream 292925 38482660 ~ 38496467 (+)
LOC110496168 mag coding downstream 374234 38563969 ~ 38572330 (+)
si:ch211-171h4.3 LOC106588290 coding downstream 403540 38593275 ~ 38597358 (+)
G1545272 NA non-coding upstream 13984 38145505 ~ 38145709 (+)
G1545258 NA non-coding upstream 27065 38121593 ~ 38132628 (+)
G1545261 NA non-coding upstream 30675 38128179 ~ 38129018 (+)
G1545242 NA non-coding upstream 64483 38094962 ~ 38095210 (+)
G1545345 NA non-coding downstream 49743 38239478 ~ 38239829 (+)
G1545405 NA non-coding downstream 198920 38388655 ~ 38390118 (+)
G1545419 NA non-coding downstream 245383 38435118 ~ 38437687 (+)
G1545432 NA non-coding downstream 305672 38495407 ~ 38508802 (+)
G1545436 NA non-coding downstream 313054 38502789 ~ 38516932 (+)
G1544455 NA other upstream 1103206 37055983 ~ 37056487 (+)
G1544137 NA other upstream 1296510 36862923 ~ 36863183 (+)
G1544007 NA other upstream 1394460 36764294 ~ 36765233 (+)
LOC110496111 LOC106588509 other upstream 2068087 36076661 ~ 36091606 (+)
G1542324 LOC106588514 other upstream 2195988 35961201 ~ 35963705 (+)
G1545533 LOC104965079 other downstream 485292 38675027 ~ 38676004 (+)
LOC110496176 LOC106588451 other downstream 500703 38677975 ~ 38696088 (+)
G1546605 LOC106588434 other downstream 926753 39116488 ~ 39120019 (+)
G1546641 NA other downstream 943384 39133119 ~ 39146252 (+)

Expression


Co-expression Network