LOC118936476 (LOC106588460)


Basic Information

Item Value
gene id LOC118936476
gene name LOC106588460
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38488870 ~ 38491346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952706.1
tGTTACAATGTTTACTGTTTCCaacatgaatgtattgtaatgtgcaGAACAATGCCGGTCCGGTGGTTATAGCTTGGAGAACTTTCCAGTTCATCAGCCCCATCATCACCTACATGCGTGGGGGATCCCAGCAGGTGGTGGTGAGGATGCACCACGTGAGTAGGGTGAGAGGCCTGGAGACTCAACTGGTGTGGGCCATCTCCAAGGAGACAGCCAGGCTTTGCCCAGAGGGCATCCCCTACTGTGCCACCAAAGTGCAGTCCATCACTTGGATCCAGCGTGTGGCTGGCAGGGTGACCCACTATGCGTCTCACCTCCGCCACGAGACGTCTGTGGACGTGACGCTTGGCTGCTACCAGCAGACTGATGTCTCAGTGGTGTACACCACTCTCCACATGGGGCTGGACGAGCTTCTCTCCTCTTCAGCGTGGTCGGAGGCTGCCTCCTTCTCTACGCCCACCACTCAGCACTTCACTGACCCAGAGCCTGAGGGCCACAACTGCTATGAGGGCTGGGAGAAGGACCTGCTGCCTGAGGAGAGGGAGGTTCCTCTGCTAAACCTCTACCTTACCACCAAGAGAGTGGAGGACATCGCCCTGAGGCTCGTCTCCCTGCGCCAGGCCTTCACTGACGAGGCCAAGTTCATAAGTACCTATAACGACTTTGTGGACTACCTGAGTGACCCCTCCAAGCGGAATGACATTGAGAGGGAGCTGGCTGAGGCAAAGATCCATCATATGAACATGATAGATGTCCTCTTTGAGCTGGTGCTGTTTGGGTTGATGACAGCTCAGAAGTCCCTGATGGTGCACCCTGGTGGGTTCGTGGAGCGTCTGTACGCTCTCCTGTACTCCTTCCTGCCCACTGCTGCCAACATGGAGCCAGAGGCTGACAGATACCTGCTGCAGCTCAGTGTAAGGGTCTAGGTTACTTCCATATTCTTAGTGTACTTCCTTACTCATGGTTTACAGGGTTTCAATGCCATTTTAGGGggagtatttctgattgtctctctcctcttgatAAGCTAGTAACTCAGAGCCATtttctgtgtgttgtgtggtgttctcTTCAGGGCGGGCTGATGGCTCTGCTAGATGACATGTTTGGCCAGCAGCTGGCCTGGTACtttaacccagagtctctggtcaCTGAGCTCTCCAGCCTCCTGGAGTACCACTTGGAGAACCTCATGGCCAGCATGTAGTCCTACTGCAGGGACCAtactcctttctccttctctctctcttttgaaggAATTGAGGACTAAGTGCTTTGTTGAACCCTGATTAGTTTTTAACACCCATTAATTTAATGTattctcttgttttctctccccACAGGATTCTTGTGACACTTTGCCACCCAACAGGGATCGAGACACCAATGCACTACATTACTTTGCattgatttttacatttttaaataaaataagttGTAGTTC

Function

NR:

description
uncharacterized protein LOC110496165 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952706.1 True 1444 mRNA 0.51 9 38488870 38491346

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-137 NA coding downstream 192914 38295883 ~ 38295956 (-)
LOC110496154 LOC106588291 coding downstream 336550 38121576 ~ 38152320 (-)
LOC118941154 NA coding downstream 347508 38140729 ~ 38141362 (-)
LOC110496145 LOC106588474 coding downstream 496501 37978117 ~ 37992369 (-)
ppt1 LOC106588481 coding downstream 558125 37922153 ~ 37930745 (-)
LOC110496164 LOC106588460 coding upstream 10773 38502119 ~ 38505762 (-)
LOC110496165 LOC106588460 coding upstream 24669 38516015 ~ 38518074 (-)
LOC118940976 LOC106588460 coding upstream 26557 38517903 ~ 38519789 (-)
zn706 LOC104962755 coding upstream 31262 38522603 ~ 38528524 (-)
LOC110496166 LOC106588455 coding upstream 49720 38478939 ~ 38553932 (-)
G1546226 NA non-coding downstream 51118 38434987 ~ 38437752 (-)
G1546193 NA non-coding downstream 132375 38355548 ~ 38356495 (-)
G1546186 NA non-coding downstream 139785 38348623 ~ 38349085 (-)
G1546073 NA non-coding downstream 284359 38204182 ~ 38204511 (-)
G1546072 NA non-coding downstream 285174 38200146 ~ 38203696 (-)
G1546250 NA non-coding upstream 5583 38496929 ~ 38511617 (-)
G1546291 NA non-coding upstream 60051 38551397 ~ 38551644 (-)
G1546303 mag non-coding upstream 72608 38563954 ~ 38570730 (-)
G1546053 NA other downstream 274821 38165250 ~ 38214049 (-)
G1544806 NA other downstream 1186696 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 2476184 36010987 ~ 36012686 (-)
LOC110496167 LOC106588455 other upstream 68303 38557052 ~ 38563365 (-)
LOC110496175 LOC104924380 other upstream 183095 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 276751 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 284938 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 1134429 39625771 ~ 39641803 (-)

Expression


Co-expression Network