LOC110496164 (LOC106588460)


Basic Information

Item Value
gene id LOC110496164
gene name LOC106588460
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38502119 ~ 38505762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951042.1
ATGTATGGGTGGTgacgggaatcgaacccactaccctggcgttgcaagcgtcATGCTCTATCAACTGAACTACGAAGGAGCACTTCAACGTCAATAGAATGTTGACAAGCAATTTTAACGGATTCTAAAAGGAATCATAGAATTCCAAACTCATTTCTATGGCAACACAGTAGTCCATTTTGTAAACAATCATTTTCGAACGTGTGTTGCCAAGATACATCCAACCGACGTTCTATGGAACGTTTTCTGTGCGAAGACAACAACTTCTGTTTGCTGCTGACAACAAACTGGATTGATTTTTCAGACCTGAACAATCAACTGGAAAATGCCTGGGTGCTTTTCAAGACTGACGGAGAGAGTGCGTGGACGTCTGCGGCCTACTGCGTCGACAGGTTGTTCAAATTCATTTGTGGCTCGTTTTTCTTGTCTTTTTCTGTTTTGCAGGGTTCGTGATCGTCGACAGATGGACAGTGACAGCGACTTCGAAGAGGAAACAACTGTCCTGGATGAGGTCCAGTTGGATGTGCCATTGGATGATGTGCCAGATATTCCACAGCTGCCAGTCCTCCTTGATGTCCAGAATGCTGCTATCATCCTTGAGGATGTGCCAGATGTGCAGACTATCTTTGAGGAGGACACTGGCAATTGGCAGTTGATTCTGATTAGGTTCAGCCCCCTGTACTGTGGGCCTGTTGTGATCAGGAACAATGCCGGTCCGGTGGTTATAGCTTGGAGAACTTTCCAGTTCATCAGCCCCATCATCACCTACATGCGTGGGGGATCCCAGCAGGTGGTGGTGAGGATGCACCACGTGAGTAGGGTGAGAGGCCTGGAGACTCAACTGGTGTGGGCCATCTCCAAGGAGACAGCCAGGCTTTGTCCAGAGGGCATCCCCTACTGTGCCACCAAAGTGCAGTCCATCACTTGGATCCAGCGTGTGGCTGGCAGGGTGACCCACTATGCGTCTCACCTCCGCCACGAGACGTCTGTGGACGTGACGCTTGGCTGCTACCAGCAGACTGATGTCTCAGTGGTGTACACCACTCTCCACATGGGGCTGGACGAGCTTCTCTCCTCTTCAGCGTGGTTGGAGGCTGCCTCCTTCTCTACGCCCACCACTCAGCAGTTCACTGACCCAGAGCCTGAGGGCCACAACTGCCATGAGGGCTGGGAGGAGGATCTGCTGCCTGAGGAGAGGGAGGTTCCTCTGCTAAACCTCTACCTTACCACCAAGAGAGTGGAGGACATCGCCCTGAGGCTCGTCTCCCTGCGCCAGGCCTTCACTGACGAGGCCAAGTTCATAAGTACCTATAATGAATTTGTGGACTACCTGAGTGACCCCTCCAAGCGGAATGACATTGAGAGGGAGCTGGCTGAGGCAAAGATCCATCATATGAACATGATAGATGTCCTCTTTGAGCTGGTGCTGTTTGGGATGATGACAGCTCAGAAGTCCCTGATGGTGCACCCTGGTGGGTTCGTGGAGCGTCTGTACGCTCTCCTGTACTCCTTCCTGCCCACTGCTGCCAACATGGAGCCAGAGGCTGACAGATACCTGCTGCAGCTCAGTGATTCTTGTGACACTTTGCCACCCAACAGGGATCTAAACACCAATGCACTACATTACTTCGCattgatttttacatttttaaataaaataagttGTAGTTCAAAAACATTTTGGTTTCCGTCTTTTCATTTATTTGATTTCATGACCTTTTCCTAG

Function

NR:

description
uncharacterized protein LOC110496164 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951042.1 True 1726 mRNA 0.50 13 38502119 38505762

Neighbor

gene id symbol gene type direction distance location
LOC118936476 LOC106588460 coding downstream 10773 38488870 ~ 38491346 (-)
trnaa-ugc-137 NA coding downstream 206163 38295883 ~ 38295956 (-)
LOC110496154 LOC106588291 coding downstream 349799 38121576 ~ 38152320 (-)
LOC118941154 NA coding downstream 360757 38140729 ~ 38141362 (-)
LOC110496145 LOC106588474 coding downstream 509750 37978117 ~ 37992369 (-)
LOC110496165 LOC106588460 coding upstream 10253 38516015 ~ 38518074 (-)
LOC118940976 LOC106588460 coding upstream 12141 38517903 ~ 38519789 (-)
zn706 LOC104962755 coding upstream 16846 38522603 ~ 38528524 (-)
LOC110496166 LOC106588455 coding upstream 35304 38478939 ~ 38553932 (-)
LOC110496167 LOC106588455 coding upstream 51290 38557052 ~ 38563365 (-)
G1546226 NA non-coding downstream 64367 38434987 ~ 38437752 (-)
G1546193 NA non-coding downstream 145624 38355548 ~ 38356495 (-)
G1546186 NA non-coding downstream 153034 38348623 ~ 38349085 (-)
G1546073 NA non-coding downstream 297608 38204182 ~ 38204511 (-)
G1546072 NA non-coding downstream 298423 38200146 ~ 38203696 (-)
G1546291 NA non-coding upstream 45635 38551397 ~ 38551644 (-)
G1546303 mag non-coding upstream 58192 38563954 ~ 38570730 (-)
G1546308 NA non-coding upstream 70370 38576132 ~ 38576346 (-)
G1546053 NA other downstream 288070 38165250 ~ 38214049 (-)
ppt1 LOC106588481 other downstream 578785 37922153 ~ 37930745 (-)
G1544806 NA other downstream 1199945 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 2489433 36010987 ~ 36012686 (-)
LOC110496175 LOC104924380 other upstream 168679 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 262335 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 270522 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 1120013 39625771 ~ 39641803 (-)

Expression


Co-expression Network