LOC110496165 (LOC106588460)


Basic Information

Item Value
gene id LOC110496165
gene name LOC106588460
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38516015 ~ 38518074 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571909.2
GATTAGGCTTTTCTTCACTTATTCCATTTGGCCTTAAcatgtattctctctctgttAGCGTGTGGCTGGCAGGGTGACCCACTATGCGTCTCACCTCTGCCACGAGACGTCTGTGGACGTGACGCTTGGCTGCTACCAGCAGACTGATGTCTCAGTGGTGTACACCACTCTCCACATGGGGCTGGACGGGCTTCTCTCCTCTTCAGCGTGGTCGGAGGCTGCCTCCTTCTCTACGCCCACCACTCAGCACTTCACTGACCCAGAGCCTGAGGGCCACAACTGCTATGAGGGCTGGGAGGAGGACCTGCTGCCTGAGGAGAGGGAGGTTCCTCTGCTACACCTCTACCTTACCACCAAGAGAGTGGAGGACATCGCCCTGAGGCTCGTCTCCCTGCGCCAGGCCTTCACTGACGAGGCCAAGTTCATAACTACCTATAACGACTTTGTGGACTACCTGAGTGACCCCTCCAAGCGGAATGACATTGAGAGGGAGCTGCCTGAGGCAAAGATCCATCATATGAACATGATAGATGTCCTCTTTGAGCTGGTGCTGTTTGGGATGATGACAGCTCAGAAGTCCCTGATGGTGCACCCTGGTGGGTTCGTGGAGCGTCTGTACGCTCTCCTGTACTCCTTCCTGCCCACTGCTGCCAACATGGAGCCAGAGGCTGACAGATACCTGCTGCAGCTCAGTGTAAGAGTCTAGTTTACTTCCATATTCTTAGTGTACTTCCTTATTCATGGTTTACAGGGTTTCAATGCCATTTTAGGGggagtatttctgattgtctctctcctcttgatAAGCTAGTAACTCAGAGCCATtttctgtgtgttgtgtggtgttctcTTCAGGGCGGGCTGATGGCTCTGCTAGATGACATGTTTGGCCAGCAGCTGGCCTGGTACtttaacccagagtctctggtcaCTGAGCTCTCCAGCCTCCTGGAGTACCACTTGGAGAACCTCATGGCCAGCATGTAGTCCTACTGCAGGGACCAtactcctttctccttctctctctcttttgaaggAATTGAGGACTAAGTGCTTTGTTGAACCCTGATTAGTTTTTAACACCCATTAATTTAATGTattctcttgttttctctccccACAGGATTCTTGTGACACTTTGCCACCCAACAGGGATCGAGACACCAATGCACTACATTACTTTGCActgatttttacatttttaaataaaataagttGTAGTTCAAAAAC

Function

NR:

description
uncharacterized protein LOC110496165 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571909.2 True 1230 mRNA 0.50 7 38516015 38518074

Neighbor

gene id symbol gene type direction distance location
LOC110496164 LOC106588460 coding downstream 10253 38502119 ~ 38505762 (-)
LOC118936476 LOC106588460 coding downstream 24669 38488870 ~ 38491346 (-)
trnaa-ugc-137 NA coding downstream 220059 38295883 ~ 38295956 (-)
LOC110496154 LOC106588291 coding downstream 363695 38121576 ~ 38152320 (-)
LOC118941154 NA coding downstream 374653 38140729 ~ 38141362 (-)
zn706 LOC104962755 coding upstream 4534 38522603 ~ 38528524 (-)
LOC110496166 LOC106588455 coding upstream 22992 38478939 ~ 38553932 (-)
LOC110496167 LOC106588455 coding upstream 38978 38557052 ~ 38563365 (-)
LOC110496170 LOC106588454 coding upstream 93379 38611453 ~ 38617573 (-)
LOC110496173 LOC106588288 coding upstream 130286 38648360 ~ 38665538 (-)
G1546250 NA non-coding downstream 4398 38496929 ~ 38511617 (-)
G1546244 NA non-coding downstream 13239 38488873 ~ 38502776 (-)
G1546226 NA non-coding downstream 78263 38434987 ~ 38437752 (-)
G1546193 NA non-coding downstream 159520 38355548 ~ 38356495 (-)
G1546186 NA non-coding downstream 166930 38348623 ~ 38349085 (-)
LOC118940976 LOC106588460 non-coding upstream 308 38517903 ~ 38519789 (-)
G1546291 NA non-coding upstream 33323 38551397 ~ 38551644 (-)
G1546303 mag non-coding upstream 45880 38563954 ~ 38570730 (-)
G1546308 NA non-coding upstream 58058 38576132 ~ 38576346 (-)
G1546053 NA other downstream 301966 38165250 ~ 38214049 (-)
ppt1 LOC106588481 other downstream 592681 37922153 ~ 37930745 (-)
G1544806 NA other downstream 1213841 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 2503329 36010987 ~ 36012686 (-)
LOC110496175 LOC104924380 other upstream 156367 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 250023 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 258210 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 1107701 39625771 ~ 39641803 (-)

Expression


Co-expression Network