LOC118940976 (LOC106588460)


Basic Information

Item Value
gene id LOC118940976
gene name LOC106588460
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38517903 ~ 38519789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951043.1
AATATTGTAGAGAACAAGCTAATGATTAATTCTATGTAATTTTTAATGACATTAGGAAGAGAAAAGGACGTTTGGACATGAATTTCGTAGCTCCCTCTTGAATTGACCATTTCTCTCTCAACATTCATCAGAGGCTTTTATCCAAAGCTAGTTACAATAAAACCTGCTGTCGTTTATGTATGGGTGGTGacaggaatcgaacccactaccctggcgttgcaagcgtcATGCTCTTTCAACTGAACTACGAAGGAGCACTTCAACGTCAATAGAATGTTGACAAGCAATTTTAACGGATTCTAAAAGGAATCATAGAATTCCAAACTCATTTCTATGGCAACACAGTAGTCCATTTTGTAAACAATCATTTTCGAACGTGTGTTGCCAAGATACATCTAACCGACGTTCTATGGAACGTTTTCTGTGGGAAAACAACAACTTCTGTTTGCTGCTGACAACAAACTGGATTGATTTTTCAGACCTGAACAATCAACTGGAAAATGCCTGGGTGCTTTTCAAGACTGACGGAGAGAGTGCGTGGACGTCTGCGGCCTACTGCGTCGACAGGTTGTTCAAATTCATTTGTGGCTCGTTTTTCTTGTCTTTTTCTGTTTTGCAGGGTTCGTGATCGTCGACAGATGGACAGTGACAGCGACTTCGAAGAGGAAACAACTGTCCTGGATGAGGTCCAGTTGGATGTGCCATTGGATGATGTGCCAGATATTCCACAGCTGCCAGTCCTCCTTGATGTCCAGAATGCTGCTGCTATCATCCTTGAGGATGTGCCAGATGTGCAGACTATCTTTGAGGAGGACACTGGCAATTGGCAGTTGATTCTGATTAGGTTCAGCCCCCTGTACTGTGGGCCTGTTGTGATCAGGAACAATGCCGGTCCGGTGGTTATAGCTTGGAGAACTTTCCAGTTCATCAGCCCCATCATCACCTACATGCGTGGGGGATCCCAGCAGGTGGTGGTGAGGATGCACCACGTGAGTAGGGTGAGAGGCCTGGAGACTCAACTGGTGTGGGCCATCTCCAAGGAGACAGCCAGGCTTTGCCCAGAGGGCATCCCCTACTGTGCCACCAAAGTGCAGTCCATCACTTGGATCCAGCGTGTGGCTGGCAGGGTGACCCACTATGCGTCTCACCTCTGCCACGAGACGTCTGTGGACGTGACGCTTGGCTGCTACCAGGTAAATAAAATATTTCCTATGTATATAGACTAG
>TU1769352
ATTCCACAGCTGCCAGTCCTCCTTGATGTCCAGAATGCTGCTGCTATCATCCTTGAGGATGTGCCAGATGTGCAGACTATCTTTGAGGAGGACACTGGCAATTGGCAGTTGATTCTGATTAGGTTCAGCCCCCTGTACTGTGGGCCTGTTGTGATCAGGAACAATGCCGGTCCGGTGGTTATAGCTTGGAGAACTTTCCAGTTCATCAGCCCCATCATCACCTACATGCGTG

Function

NR:

description
uncharacterized protein LOC110496164 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951043.1 False 1226 mRNA 0.47 6 38517903 38519789
TU1769352 True 232 lncRNA 0.51 3 38518382 38518805

Neighbor

gene id symbol gene type direction distance location
LOC110496164 LOC106588460 coding downstream 12141 38502119 ~ 38505762 (-)
LOC118936476 LOC106588460 coding downstream 26557 38488870 ~ 38491346 (-)
trnaa-ugc-137 NA coding downstream 221947 38295883 ~ 38295956 (-)
LOC110496154 LOC106588291 coding downstream 365583 38121576 ~ 38152320 (-)
zn706 LOC104962755 coding upstream 2819 38522603 ~ 38528524 (-)
LOC110496166 LOC106588455 coding upstream 21277 38478939 ~ 38553932 (-)
LOC110496167 LOC106588455 coding upstream 37263 38557052 ~ 38563365 (-)
LOC110496170 LOC106588454 coding upstream 91664 38611453 ~ 38617573 (-)
LOC110496173 LOC106588288 coding upstream 128571 38648360 ~ 38665538 (-)
G1546250 NA non-coding downstream 6286 38496929 ~ 38511617 (-)
G1546244 NA non-coding downstream 15127 38488873 ~ 38502776 (-)
G1546226 NA non-coding downstream 80151 38434987 ~ 38437752 (-)
G1546193 NA non-coding downstream 161408 38355548 ~ 38356495 (-)
G1546186 NA non-coding downstream 168818 38348623 ~ 38349085 (-)
G1546291 NA non-coding upstream 31608 38551397 ~ 38551644 (-)
G1546303 mag non-coding upstream 44165 38563954 ~ 38570730 (-)
G1546308 NA non-coding upstream 56343 38576132 ~ 38576346 (-)
G1546312 NA non-coding upstream 60388 38580177 ~ 38580474 (-)
G1546053 NA other downstream 303854 38165250 ~ 38214049 (-)
ppt1 LOC106588481 other downstream 594569 37922153 ~ 37930745 (-)
G1544806 NA other downstream 1215729 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 2505217 36010987 ~ 36012686 (-)
LOC110496175 LOC104924380 other upstream 154652 38674378 ~ 38676029 (-)
G1546385 LOC106588448 other upstream 248308 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 256495 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 1105986 39625771 ~ 39641803 (-)
LOC110496165 LOC106588460 coding downstream 308 38516015 ~ 38518074 (-)

Expression


Co-expression Network