LOC110496166 (LOC106588455)


Basic Information

Item Value
gene id LOC110496166
gene name LOC106588455
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38478939 ~ 38553932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571911.2
gagcgagaggcaggaAGTTCACTTCTCTGTGGCCTTTTCACCCAAGCGGCACAATGACTTGTGGTTGGGGGCCACATCATttagacatgcacacacagacacactcacacagacacggGAAAGACAGAGAAGATCGTGAGGATTGTAGGGACACAAACCTATCTGTAAATCTAAGACACACAGCTTAGAACTATGAACCTCCACGCTTTGTTCAACCCCTGAAGCTAAACATGCTGGACAGCTACTACTGAAGCATCTCAGCTCATAGAATGACACCAAACGCCACCCTTCCATTCGTCCTCGTCACCTCAGCCACCCGAGATGACAAAGCCAAGGTGGTGGACATCGAGGCCATCATGAACAACTTAATCATTGTCCTTTACACGCTGACCATTGTCCTGGGCACCACGGGCAACTCTGTAGTCATCTGGGTGGCAGGCTTCAAGCTCAAGCCCACCGTCACCAATGTGTGGCTGGTCAACCTGGCCGTGGCCGACCTCATCTTCTGCCTGAGCCGTGTGCTCTCGCTGACCAAGAAGCTCTTCTTCGACTACTGGCCGTTCGGCATCTTTTTATGCAAGTTCAACGGCTTCTTCAAGTATGCCAACATGTTCTGCAGTGTGTTCCTGCTCGCTGTCATCAGCATGGACCGGACGCTCTGCGTCTGGCACCCCGTCTTTACCAAACGGCGTAGGACGATCTGCGCCGCCCGCCTGGTGAGTGCCGGCGTGTGGGCGGTGGCGGCCATTTTGAGCGCCCCCTACTTCGCCTACCGCCAGGTTTACCTCGGCAAGAACAACCTGAGCAAGTGCTCGCTAGATGTCAAGGAATCAACGAAAGGCGATAACAGCGCTAAGCTCGCGCTCTACCTAATGCGCTTCCTATGCGGTTTCCTGCTTCCTTTCCTCATCATCCTCTGCTGCTACATCCTAGCAGGGTTAGGCATCAGACGCACCCGCCTGTTGGGCAAGTCACGTCCCCTCCGTATCCTGGCATCGCTGGTCTGTGCTTTCTTCCTGTGCTGGGCGCCCTACCACTGTCTCCTACTGGTCAAGATGGTGAAGAGCAACAGTATGGTGGTGAAGGTGGGGCTGACAGGGGCCACAGGCTTTGCCTACTTCAACAGTTGTGTGAACCCGCTGCTGTACTTCTGTATGGGGTTGGACATGAGAGGGTCAAGATTCAGGCAGAGCTTAGCTGGGGTGTACCGGAGAGCACTAGCCGATGACAGAGATGGTCGAAACACTCAGTCCAACGAGCGCACAGTGGATGATAGTTCTGGCTCTGTATCACGACTTGCAATGGTGAATGTGGCCAATGTCAGTTTCGAGTGAATGTGGCCAAAGTCTGTGGGAAGGCACATTTGGTATGAGGAGGAGTTACTGTCCTTATTAGATCACAGGCTAATTAAACAGTGAATAGCTGAATAGCTTGTGTAGACATATTTTTTATCAGTTAGGATACATATAGACATAGGATAACTGTGAATTTATGTAAATGCCTCAGGAAATAATTATCACACTTTCGAAGTGTTATGTGATGAAAATCATAGAAAGAAAGTGGAACTGTGCCTAGAAAATAACCTATCAGGAGGAAGTGATACAACTTCTGGGGAAAGTCATAAATGACTTCAATCATGCTATGTTTTACTAAGTGTCATGTTTGGAAAAGTGGAAAAACGAGGATATTAATTCCCATATTCCGTCccatgagacaagattgtaattggAAATGGCGAAATTGCGGAGAAAAAGGAGTGTAAAATGCCCTGGCAAATATTCTTATACTTACCGGTGTAAACTACAACATTATCCCAATTTGATATGTTGCTTAAGGGACAGCTCACAATTTACTGGGGGGTGGTCCAaaataggggagggttgtcaaactttGTCTTTGTTGCTTTGTGGtgggttgtgttttttttttattgggcacaggccagtatagtctaccagtctaacggTCTATCCAgcattcatagtgacaatagtggtagATGGATCAtttgtccagatctgcaataggCTAACTAACAATCACACCTCACATAAAACCATTCAAAACTGCACCTCATTCACTCTCATTGATGATTAAAAGGGGGGGAAATAAAGTTGAGAGAAAATAGGAAGAAAGGTGAAAGGGAGTCAGAAGAAGAGGATGTGATCTGGACAACTTGACTTGAGGAAGCGTGGTGGTCGCTTGTTTCTCTTTTAGTCCCCACATTGCTCCTCCTAGACAGACGGTTTCCATCATGTCTCAGTCACATGACTGGTCTCTCCTTCAGACAAACTGTATCAGAGGTGAACACAGAGGCTTAGCTGAAGCTCTGTGGATGCCAGTTCAGATAAGACACCACACTCACAGCGGAAGAGAAATGAAAAACACAATTCAACTCACTTCATgactctctcgctccctgtctctctttctctctcttcttctccgcTCTCTGATTATATTTTTCAGAAATAAAAAGTATGAAAGAGACAATTCAGCTGACATCTATTTATCTTTTGATAAATATTCTCAATGAGAATCAAAACTGTTTTCCTGTATTGTCTGAAACTGTGTAGCTAGCGTTGTCATTCATGAAAGGCCTGAACGTCCAGGATGCAGAGAAACAGAAATCCCCCTCAGGACAATGGAGGAAAGGAACATAAAATGGATGGGAACAAACAGAACAGACCAGCCAGCCGTACCCTCCTTCCTCACATCTTTTTGATGCTCTGCCCTTTATCAATgtcaaattattttttaaatcaatgaGAGTAAAACAAATTGACCAATTGCCATTGTTGAGAAAGTACCATGCCAACTGATATCACATTCTTCAACCAACATGTTGACCTATAGGAAGAGGGAACTCCTACTGTATGTCTGATTCATTTGATTTGTCATGAGTCAGCAACACACATCCTCTATAGTTGCTTTTTCACTGATCATCATTCACAAGGGGGAACAAACAGAGGTTCTTCTCTTGCCTTGTTGTCTTCCCTTGCTAGCAAGTTGGCTAaacactgctagctagctagccttttGAAATAATCagatttttaaataaataatattaaATGGCAAATACTTATACTTTCCGATGCAACGTACAACATTATACCAATTTAATATTCTACTTCAACGTATTGGCTCCCCTATGAGCTAAAAATAGAATGTCATAATTGTTATGTCACATTTTTTTTGTTCTGTTTTTACGTTTCAAAATGAGGGGATTCTAATAAGGCTACAATCTTGTCCAGTGccaacccgtcattcagggcatgGGGGGGGGGAGTCCCACCTGCTTTGAGCCCCACAtgttcagcaaaaaaaaaaagttacaattATTCTTGACTTAATAAA
>TU1769266
CCCCTATGAGCTAAAAATAGAATGTCATAATTGTTATGTCACATTTTTTTTGTTCTGTTTTTACGTTTCAAAATGAGGGGATTCTAATAAGGCTACAATCTTGTCCAGTGccaacccgtcattcagggcatgGGGGGGGGGAGTCCCACCTGCTTTGAGCCCCACAtgttcagcaaaaaaaaaaaaaagaaggcTGCCATGGGAATCAGTCAGCTTCCTGGTTGAGTAATGTTATGAAGAAGTAGAAACATACAACGTTGAAGAGAGGAGCGGACATTTTCCTTGGTACAAAATATCATGACTTCATTCATCTCAATACTAATCATTCTCCAAGGTGATATGATACAGaactgaaaaataaataaaaaatgttttcttAAGCTAGaaaagcaacaaaacaaaaaaatacaacagGATTATAAATTAACCAGAATGAAAGAAAGACATTCACAAATCAAATCTTTGCACACAGCGATGCACGCGGATGACCTCTGATTTCTGTACCGCGTGACGACGACGACACGCGTAGACACAAACATTTATGTCTGCTGCTCTGGGGGTTCCCAGCGGCAACGGAGGGGGGCGAAGTGGAATTACAGCGATACAGACTGTCAGTGTGCGCCGGTTTTCAATGTCTAATCTGGAATAAGCCTAGTTTAAATTGTGTTAAATTGTGCATGTCCTTACAAGCCTCTTCATCGTTACACGGTTTGTCACGTTTCTGCTGTTAGTGGGGTCCCGCCAAGAAGTCATTTTTGAATTTGAGTGTTAGCTTCAGACTAATGGGGCCATATGACAAACCCTCCATTCCATCAAACACACACTCCCACCGACCGACACACTGATTGGTGCAGTGGTTTGTGAGGacattgcagtgtgtatgtgtgtttcccacCACTTCCACAGTCTCCTAGGCTTGAGGTTTAGGCAGTTGTCAGAGTGGGGCAACTCAGGAAGTTGTCAGAGTGGGGCAGCCCACACACTGAACATAAATCCACTCTAGTCCGGTTGTTCCCGACCCACAGACATGAAGTGAAATTCCTCTTCACTTCCCAGTCCAGGAGAGTAAAAAACAAGATGGCAGTCATTGGATATTTTCTGTTTAACTCCCGGTGAGAAACAATTTCCACAATACCCACAATCCAGTTCTTCGGAATGCCATTCTCCAGCAAGTTCTGAGTCATTTCATCACTAccctcaatgtgtgtgtttgtatttcagttgtgtgtgtgtcagtgtgtacatgCACAAAGTAGTTACAAGGCTCTACCTAACGCTCTGTGGAACTCAGATTAGGTAAAAGTAAGGACAGAAATGTGCAACACAAAtaaggcagcatcatgttggttGGTTCAAACTGCTGTGGCTTTCTCTGAAACAGTCTTAGCACAATCCCGTTACGAGAGAGAGCGCACAGGAGACTGGAAGGCAAACTGGGATCTGGGTTTTAAAGGGGGAAGTTCTGTCCTGTTTCACCCCAGTCTAAGTGCACGAACCCGGGCCTCGATGCCCCccagtgagtgtgtgtagaaagtgagtgtgtgtacgaaagtggggaaaaaaagagaaagatatTTCTccccccatctatccctctctctacctgccttCCATACAGTAGTATTGATGCATGAATCCCATGCAAGCCCTATGGATGGATGTTTGGATCAAATGTGACACCCAATATGGCCGCCAGTAGTCTGTCCACTATAGAGCATCTCTTTGAATGGAAGACGGTCCGTTCTACTTGATCTAATTGTATAGTTTGGACATCTTCTTCTCCATTTCATCCTGGCTGGTGTTTGGGGGGCTGGGGTAGCCCGTGGAGTCAAACCAGCTCTATAGTTAGATGTATGACGTTTTTTTTTACGTCTCCTTCACTACTTCTTCCCAGAAGCGGGTGTCTTGGGGCTTGGGGCCTTCTTGGAGATGGTAGGGATCTTGGAGGGCTTGGCTGCTCCTGGTCGCCGGGGGGTGTCCGAGGTGTCCGAGCAGGCCGAGCGCGTCTCCAGGAGCTCCGAGGCATCCGAAGCGTCGCTGCCCCGCCGGCTGCTGGCCCTGCTGCCCGCTCTGCTGCCCGCCCGGCTGGCAGCACCACTGGCACCCGATGGGGTACGCCTG

Function

NR:

description
microtubule-actin cross-linking factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571911.2 False 3360 mRNA 0.45 2 38541066 38553932
TU1769266 True 2121 lncRNA 0.47 2 38478939 38541276

Neighbor

gene id symbol gene type direction distance location
zn706 LOC104962755 coding downstream 12558 38522603 ~ 38528524 (-)
LOC118940976 LOC106588460 coding downstream 21277 38517903 ~ 38519789 (-)
LOC110496165 LOC106588460 coding downstream 22992 38516015 ~ 38518074 (-)
LOC110496164 LOC106588460 coding downstream 35304 38502119 ~ 38505762 (-)
LOC118936476 LOC106588460 coding downstream 49720 38488870 ~ 38491346 (-)
LOC110496167 LOC106588455 coding upstream 3120 38557052 ~ 38563365 (-)
LOC110496170 LOC106588454 coding upstream 57521 38611453 ~ 38617573 (-)
LOC110496173 LOC106588288 coding upstream 94428 38648360 ~ 38665538 (-)
LOC110496175 LOC104924380 coding upstream 120446 38674378 ~ 38676029 (-)
LOC110496183 LOC106588442 coding upstream 410155 38964087 ~ 38972431 (-)
G1546250 NA non-coding downstream 29449 38496929 ~ 38511617 (-)
G1546244 NA non-coding downstream 38290 38488873 ~ 38502776 (-)
G1546226 NA non-coding downstream 103314 38434987 ~ 38437752 (-)
G1546303 mag non-coding upstream 10022 38563954 ~ 38570730 (-)
G1546308 NA non-coding upstream 22200 38576132 ~ 38576346 (-)
G1546312 NA non-coding upstream 26245 38580177 ~ 38580474 (-)
G1546313 NA non-coding upstream 27654 38581586 ~ 38581888 (-)
G1546316 NA non-coding upstream 31017 38584949 ~ 38585149 (-)
G1546053 NA other downstream 327017 38165250 ~ 38214049 (-)
LOC110496154 LOC106588291 other downstream 388834 38121576 ~ 38152320 (-)
ppt1 LOC106588481 other downstream 617732 37922153 ~ 37930745 (-)
G1544806 NA other downstream 1238892 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 2528380 36010987 ~ 36012686 (-)
G1546385 LOC106588448 other upstream 214165 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 222352 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 1071843 39625771 ~ 39641803 (-)
trnaa-ugc-137 NA coding downstream 182983 38295883 ~ 38295956 (-)
LOC118941154 NA coding downstream 337577 38140729 ~ 38141362 (-)
LOC110496145 LOC106588474 coding downstream 486570 37978117 ~ 37992369 (-)
G1546193 NA non-coding downstream 122444 38355548 ~ 38356495 (-)
G1546186 NA non-coding downstream 129854 38348623 ~ 38349085 (-)
G1546073 NA non-coding downstream 274428 38204182 ~ 38204511 (-)
G1546072 NA non-coding downstream 275243 38200146 ~ 38203696 (-)
G1546291 NA non-coding upstream 10121 38551397 ~ 38551644 (-)

Expression


Co-expression Network