LOC110496167 (LOC106588455)


Basic Information

Item Value
gene id LOC110496167
gene name LOC106588455
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38557052 ~ 38563365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571912.2
CTGTGTGAACGGAGAGAGTGGATGGGAGCGAGAGAGCTGGAacgtgagaaagagagagcgagagacaggaaGTTCACACATCTGATTACTTTTCTCTGGCCACATCACCCAAGTGACACAATGACTTATGGCTGGAGTTTCATCACCtagatacacagacacagacagctaCTACTGAAGCATCTCAACTCATAGAATGACACCAAACGCCACCATTCCGTTTGCCCTCGTCACCTCAGCCGCCCGAGATGACGAAGCCAAGGTGGTGGACATCGATGCCATCATGAACAAATTAAACATTGTCCTTCTCACGCTGACCATTGTCCTGGGCACCACGGGCAACTCTGTAGTCATCTGGATGGCAGGCTTCAAGCTCAAGCCCACCATCACCAATGTGTGGCTGGTCAACCTGGCCGTGGCCGACCTCATCTTCTGCCTGAGCCGTGTGCTCTCGCTGACCAAAAAGCTCTTCTTCGACTACTGGCCGTTCGGCATCTTCTTATGCAAGTTCAACGGCTTCTTCAGGTATGCCAACATGTTCTGCAGTGTGTTCCTGCTCGCCGTCATCAGCATGGACCGGACGCTCTGCATCTGGCACCCCGTCTTTACCAAACGGCGTAGGACGATCTGCACCGCCCGCCTGGTAAGTGCCGGCGTGTGGGCTGTGGCGGCCATTTTGAGCGCCCCCCACTTCGCCTACCGCCAGGTTTACCTCAGCAAGAATAACCTGAGCAAGTGCTCTCTGGAGGACAATGAGCCAAAAGTCGATAACAGCGCTAAGCTCGCGCTCTACCTAATGCGCTTCCTATGCGGTTTCCTGCTTCCTTTCCTCATCATCCTCTGCTGCTACATCCTGGCAGGGCTAGGCATCAGACGCACCCGCCTGTTGGGCAAGTCACGTCCACTCCGGATCTTGGTATCGCTGGTCTGTGCTTTCTTCCTGTGCTGGGCGCCCTACCACTGCCTCCTACTGGCAAAGATGGTGAACAGCAACAGTACGGTGGTGACGGGGGGGCTGACAGTGGCCACAGCCTTTACCTACTTCAACAGTTGTGTGAACCCGCTGCTGTACTTCTGTATGGGGTTGGACATGAGAGGGTCGAGGTTCAGGCAGACCTTAGCGGGGGTGTACCGGAGAGCACTAGCCGATGACAGAGATGGTCGAAACACGCAGTCCAACGAGCGAACAGTGCATAATAGTTCTGGTTCTGCGTCACAACCTGCACTCAGTCTCAAGTGAATGTGGCCCACGTCTGAGAGAAGTCACATTTGGTATGAGGAGTGGTTTCAGTCCTTATTAGCTCACAGGCTAGTAAACACTGAATAGGTTTTCCCAACTTGTGTAGACACACATATTTCAGAGTTTTTATCAGTTGGGATACATATGGACACAGGGTAACTGTGAATCTACATAAATTACTCAATAAATCAGCTTCACATTTTCTAAGTGTTATGTGATGAAAATCCCAGAAAGAAAGTGGAACTGTGTCAAGGAAATATAAAATAACATATCAGGGGAAGTGGTACATCTTTTGGGGAAAGTCCTAGATGACTTCAGTCATGCTATGTTTTAATAAGTGTCATGTTTCAACAGTGGAAAAACAAGGATATTTATTCCCATTTTACCTTTCAGCTTTTCAGCTTTTGGAATCATTGTCAACTACTTGGCAGCATCCTTATGTGCCACTGGTGAATTTGTCATATTGCTGACACCTCATTCACTCTCATTGATGATACAAAGAGGGGAAAATAAAGAGTTGAGAGAAAATAGGAAGAAAGGTGAAAGGGAGTCAGAAGAAGAGGATGTGATCTGGACAACTTGACTTGAGGAAGCCTGGTGGTCGCTTGTTTCTCTTTTAGTCCCCACATTGCTCCTCCTAGACAGACGGTTTCCATCATGTCTCAGTCACATGACTGGTCTCTCCTTCAGACAAACTGTATCAGAGGTGAACACAGAGGCTTAGCTGAAGCTCTGTGGTTGCCAGTTCAGATAAAAACGTGTGGTCACGTTTCCACTTAATATGCAATGTCACACTCACAGCGGAAGAGAAATGAAAACCACAATTCAGTTCACTTTCCGactttttctcgctctctccctccttccctctcacttactctctctttctctccttctcctttctctGATTATATTTTTCAGGACTCTTGTACTAAAATATAAAGTATGAAAGAGACAATTCAGCTGACATCTATTTATCTTTTGATAAAAATTCTCAACTGTTTTCCTGTATTGTCTGAAACTGTGTAGCTAGCGTTGTCATTCATGAAAGGCCTAAACGTCCAGGATGCAGAGAAACAGAAATCCCCCTCAGGACAATGGAGGAAAGGAACATAATTGGATGGGAACAAACAGACCAGCCAGCCGTACCCTCCTTCCTCACATCTTTTTGATGCTCTGCCCTTTATCAAtgtaaaattatttttttaatcagtGTGTAAAACAAATTGACCAATTGCCATTGTTGAGAAAGTACCATGCCAACTGATATCACATTCTTCAACCAACATGTTGACCTATAGGAAGAGGGAACTCCTACTTTATGTCTGATTCATTTGATTTGTCATGAGTCAAAAGGTCTTGAATTGAGCAACATGTGAAATAATAAAATGGGTTGAAGGCAGTGGGGGTGAAGGGTGCTGCTGGATATGTATTTAATACACAAGTTAGGTTTTTCTTTGCCTCTATTCCAGCAACACACATCCTCTATAGTTGCTTTTTCactggtcaacattcacaagggggCGACAGAGGTTTTCTTGGTGTCTTCTCATTTGTTGTGAAAGCAAAAGAAGAGTCTCTTGTCTTGTTGTCTTCCCTTGCTAGCAAGTTTGCTTAacactgcaagctagctagcctttTGAAATAATCAGATTTCTAATGAAATAATATTAAATGGCAAATACTTTCCGGTGTAACCTACAACATTATCCCAATTTGATTTGCTGCTTCAATGTACTGGCTCACATATCAGCTAAACATACAATGTCATAATTTTTATTCAGGGCCTCTCCTGTTTtaagccccacctgtttagctaaaaaaattaa
>TU1769405
gaaagagagagcgagagacaggaaGTTCACACATCTGATTACTTTTCTCTGGCCACATCACCCAAGTGACACAATGACTTATGGCTGGAGTTTCATCACCtagatacacagacacagacagctaCTACTGAAGCATCTCAACTCATAGAATGACACCAAACGCCACCATTCCGTTTGCCCTCGTCACCTCAGCCGCCCGAGATGACGAAGCCAAGGTGGTGGACATCGATGCCATCATGAACAAATTAAACATTGTCCTTCTCACGCTGACCATTGTCCTGGGCACCACGGGCAACTCTGTAGTCATCTGGATGGCAGGCTTCAAGCTCAAGCCCACCATCACCAATGTGTGGCTGGTCAACCTGGCCGTGGCCGACCTCATCTTCTGCCTGAGCCGTGTGCTCTCGCTGACCAAAAAGCTCTTC

Function

NR:

description
C3a anaphylatoxin chemotactic receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571912.2 False 3069 mRNA 0.45 2 38557052 38563365
TU1769405 True 425 TUCP 0.52 2 38559649 38563318

Neighbor

gene id symbol gene type direction distance location
LOC110496166 LOC106588455 coding downstream 3120 38478939 ~ 38553932 (-)
zn706 LOC104962755 coding downstream 28544 38522603 ~ 38528524 (-)
LOC118940976 LOC106588460 coding downstream 37263 38517903 ~ 38519789 (-)
LOC110496165 LOC106588460 coding downstream 38978 38516015 ~ 38518074 (-)
LOC110496164 LOC106588460 coding downstream 51290 38502119 ~ 38505762 (-)
LOC110496170 LOC106588454 coding upstream 48088 38611453 ~ 38617573 (-)
LOC110496173 LOC106588288 coding upstream 84995 38648360 ~ 38665538 (-)
LOC110496175 LOC104924380 coding upstream 111013 38674378 ~ 38676029 (-)
LOC110496183 LOC106588442 coding upstream 400722 38964087 ~ 38972431 (-)
LOC110496188 LOC106588437 coding upstream 503499 39066864 ~ 39081723 (-)
G1546291 NA non-coding downstream 5408 38551397 ~ 38551644 (-)
G1546250 NA non-coding downstream 45435 38496929 ~ 38511617 (-)
G1546303 mag non-coding upstream 589 38563954 ~ 38570730 (-)
G1546308 NA non-coding upstream 12767 38576132 ~ 38576346 (-)
G1546312 NA non-coding upstream 16812 38580177 ~ 38580474 (-)
G1546313 NA non-coding upstream 18221 38581586 ~ 38581888 (-)
G1546316 NA non-coding upstream 21584 38584949 ~ 38585149 (-)
G1546053 NA other downstream 343003 38165250 ~ 38214049 (-)
LOC110496154 LOC106588291 other downstream 404820 38121576 ~ 38152320 (-)
ppt1 LOC106588481 other downstream 633718 37922153 ~ 37930745 (-)
G1544806 NA other downstream 1254878 37301508 ~ 37302174 (-)
G1543346 LOC106588513 other downstream 2544366 36010987 ~ 36012686 (-)
G1546385 LOC106588448 other upstream 204732 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 212919 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 1062410 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 1079490 39642841 ~ 39688750 (-)

Expression


Co-expression Network