si:ch211-171h4.3 (LOC106588290)


Basic Information

Item Value
gene id si:ch211-171h4.3
gene name LOC106588290
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38593275 ~ 38597358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571913.2
gagagagaaagaaagaggcacAAAACAGGTGGAAAAGCTCAGGAAAAGAGGCAATCACTTGAAAGCCTGTGAATAAGTGTGAGCCGCTTGTTAAGCACAGGCAtgtcctctctcgctcctcttcaAAGGTCGAATGCAGCaagcttggagagagagagagagagagagagagagagacagagagcaagagagagagagagaaagacagagagaatgtgTGTCCACTGTCTATGTGtttgtgagtgaaagagagagagagagaggtgccgtTGGAATAAGGGAGAGATTCTAAACAAGTGTTTGGATAGACACAGGGATTCATTTGTTGATTGACAGAACAAACTCAACATTTCGACTGGCCTTGGGCTCCACAACAGGGAGGGAAAGGCACCAGTGGGAGGGAGAGAATCCGGTGGGAGGGAGAGAACGTGGGAGGAgtgcaggaggagaggaaaaggggagcGAGATAATGTAGGGATCAAAGTAGGGGTTGGAGATATCAAAAGGCACAAACAGGAGAGATAGAGCGGCCTCTGCTGAGAAAGACAGACACGGACAACTACTCTACAAGATCTCTAGTGCAACTCTATTACCTTATAGTTGGAAGAGCTGATGTGCAGCCTATGTGTTGTAGAAGTGGTATTGAAAGGTGCACTACTTGGTCGATGTGGGCAGGGATACAGATTCACTGTAGCTTGTCTGTGAGGAACATCACAATATCACTGTGAAAGAGACTGAAGTCTACCACAGAGCCAAAATGACAGCGGCCACAAGGTTATTGGACGAGATGTGCCATCTCACCGTCCAGTCGTTTACATCACTGGAGACCTCGGACCACTTCCAGGTGGTCAAGATGTTAGGGGAAGGGTCGTACGGGAAGGTCATGTTGGCTGTACATAGGAAAAGAGGAACTCCAATGGCTCTGAAGTTCTTTCCTCGTGATTCCACAAATCTCTTCTCCTTTTTGCGAGAGtataacctctccctctccttctgcaCCCACccgtccctgaccaaggccctgggCATTGTCTTCTCCACCCCCACACATTACGTTTTCGCCCAGCAAGCTAGCCTCTTCGGTGATCTGTACGACGTCATTGTCCCTGAGGTGGGTGTGGAGGAGGATTGTGTCCAGAGGGTCGTGTCCCAGCTGAGCAGTGCCCTAACCCACCTCCACTCACTGGGTTTTGTCCACCGCGACGTCAAGCCCGAGAACATCTTCCTGGTTGACGCTGCCTGCCGCTGGGTCAAACTAGGCGACTTTGGCATGGCCAAGGCCACGGGAACCAAGGTACCCGGTGTGTGGTACAGTTCTGCTTACTGTACGCCCGAGGCAGAGATAGCAAAGGAGTCAGAGGATAGTAGACATAATACTGCTTCAAAACCTGATGGGGGAAATGGGTTGGACAACAAGATCAAGAGGGTGTGGGTGTCGGTTGAGGTCGGTACAGACTGCTGGGCCTTGGGGATCCTCATCTACGCCATGCTGACTGGCAGTCTACCTTGGACGGAGACCGCATCCGACGACCGCTCGTACATCAAGTACAAAGAGTGGTTTGACCAGGAGAAAGATCAAGATGGTCAGGATGACGAACTAGACCTATGGGGGGAAGGAAAAGATGAGGACATCATGATGAGTTTGGATGAAGGCACGCGGAATCTGAACAAGAAAAAATCCAATCCGGTCGCCCCCCAGTTTGCCTATTTCACCCCACTGGCCTGCTCCCTTTTCCAGGCACTTCTCCACCCACAGCCTGGGCTTCGCGGTAGGCCCGACGATGTACTGGGCTACCTCGGGGGAGACTGGTTGTGGAAGAAGGAGAAGTTACggttggaggaggagaggaagagaattAAAGGGAGAGAGGTCATCAGAAACGGGAAAGAGAGGCAGGGAAGGGTGGAGAGATAAGGGAGTGGCGACACACGATCATAAACGTACAAACTCAGAGGTGAAAGAGACAATATTTTTGACCCCCAGAAAGCAATACATATCCTCTAATGTGTCACATTGGTGCTTAAAAAGACcttgtacagtatataataccACTACAGTTGCACTTTTTGTAAGATAAATAGCCACCAAGTCATTGTTGATACCGGATAGCCTTTGGGGATAGACACAGTTGCATTTGGTTACTATAGGGACTTTATAAGCACTTTATAAATTAGCATGTTGATGTGTTCAATCTAGTAAATTCTACAGTAAGTGTGACTTGATGATGTTGTTTCTGTATTCTAATGTTTTTTTATAATATGGAAATATCATCTGTACGTCATCATTTCCTGTGGTTAGAATTGAGTCTAAtaaaatgtttattatgagttAA

Function

NR:

description
serine/threonine-protein kinase SBK1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571913.2 True 2333 mRNA 0.48 4 38593275 38597358
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496168 mag coding upstream 20945 38563969 ~ 38572330 (+)
LOC110496162 LOC106588459 coding upstream 96808 38482660 ~ 38496467 (+)
LOC110496159 LOC106588461 coding upstream 111944 38207643 ~ 38481331 (+)
LOC110496158 LOC106588463 coding upstream 388737 38193174 ~ 38204538 (+)
LOC110496157 LOC106588464 coding upstream 403540 38159693 ~ 38189735 (+)
LOC110496171 LOC106588453 coding downstream 20444 38617802 ~ 38631694 (+)
LOC110496172 LOC106588452 coding downstream 35149 38632507 ~ 38645625 (+)
LOC110496176 LOC106588451 coding downstream 80617 38677975 ~ 38696088 (+)
cnot3b LOC106588450 coding downstream 99763 38697121 ~ 38713314 (+)
LOC110496812 LOC106588449 coding downstream 119127 38716485 ~ 38730617 (+)
G1545276 NA non-coding upstream 69442 38522599 ~ 38523833 (+)
G1545436 NA non-coding upstream 76343 38502789 ~ 38516932 (+)
G1545432 NA non-coding upstream 84473 38495407 ~ 38508802 (+)
G1545419 NA non-coding upstream 155588 38435118 ~ 38437687 (+)
G1545405 NA non-coding upstream 203157 38388655 ~ 38390118 (+)
G1545493 NA non-coding downstream 7910 38605268 ~ 38605493 (+)
G1545508 NA non-coding downstream 85305 38682663 ~ 38685107 (+)
G1545537 NA non-coding downstream 89902 38687260 ~ 38687551 (+)
G1544455 NA other upstream 1536788 37055983 ~ 37056487 (+)
G1544137 NA other upstream 1730092 36862923 ~ 36863183 (+)
G1544007 NA other upstream 1828042 36764294 ~ 36765233 (+)
LOC110496111 LOC106588509 other upstream 2501669 36076661 ~ 36091606 (+)
G1545533 LOC104965079 other downstream 77669 38675027 ~ 38676004 (+)
G1546605 LOC106588434 other downstream 519130 39116488 ~ 39120019 (+)
G1546641 NA other downstream 535761 39133119 ~ 39146252 (+)
G1546713 LOC106569985 other downstream 761053 39358411 ~ 39372481 (+)

Expression

si:ch211-171h4.3(LOC106588290) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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si:ch211-171h4.3(LOC106588290) Expression in each Bioproject

Bar chart with 12 bars.
si:ch211-171h4.3(LOC106588290) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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Co-expression Network