LOC110496170 (LOC106588454)


Basic Information

Item Value
gene id LOC110496170
gene name LOC106588454
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38611453 ~ 38617573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571915.2
CCTATTATACATATTATTGGAATAGGGATGCTGCCTTAAAACATTGGGGGATGTGCGCAGGGTCAATGCACCCATTGATGGAGCACAAACTCCGCTCTGGAATCCCCATCACGTCATCGCCGTATTGTGAGTATATAGGCCACTCGCAAAAACCGAAAGGAACTATAAATAAGCCACACATCAATTTAATTTACATCAAGATGTCGACCGAGGGCGAATACGAGTCGATCCTTTGCGTTAAACCCGATGTCAACGTTTATCGAATACCACCGAGGGCTACAAATCGTGGATACAGGGCAGCAGACTGGAAGCTGGATGTGCCCGATTGGTCAGGGCGCATGCGGATAACGGCGAAGGGGAAAGTGGCCTACATCAAACTGGAAGACAAAGTCTCAGGGGAGCTGTTTGCTCAGGCCCCTGTCACAGAGTATCCCGGCATCGCAGTTGAAACCGTAAGCGACTCCAGTCGCTACTTTGTCCTGCGAATACAGGATGACAATGGCCGCAGTGCGTTTATTGGCGTTGGATTCGCGgacagaggggactcttttgacTTCAACGTGTCTTTGCAGGACCACTTTAAGTGGGTGAAACAAGAGAATGAGATCAGCAAAAACCCTAAGGGGGCAGCTTTGGGACCAAAGCTGGACTTGGGATTTAAAGACGGACAAACCATCACCCTAAATATTGGGCAAGGCAAAAAGAGGGATAAGCCACGTCCACAGGGGGCAGGTGGGCTCGGTCTCCTACCGCCGCCACCAAAAGGAAAGAtggctcctcctccttcctctgccttCTCCAATCACAACACTGTGCCTCAAACAGGAGGCTCAGATACGGgctgttTGCTAGATCTGGACAGTAGTAACTCCAACACTGTGGTCCAATCATCCAACCCCAGCAGTGATCTTTGGGGAGACTTCTCCTCTCCTGCAAGTTTGCTCCCTCCAACATCGCGACAAGAGCACACGCCGAATTGGGGCCAGTTTTGAGTCCACATCATCGCCTTTCTCATTGGCCTCCACCGCTGAACGCAACGCCTCCCTCCGTCGCTACAAACACAGTCAAAGCAAACTTTCCAAGAGACGAAGAACACCATGCACGTCTAGAAAGTCTTCATCAAATCTAAGAATGGACGTACACTACAATCTCCTCCCAAAGTAAAAA

Function

NR:

description
adaptin ear-binding coat-associated protein 1-like

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20069 NECAP1_2; adaptin ear-binding coat-associated protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571915.2 True 1167 mRNA 0.50 8 38611453 38617573

Neighbor

gene id symbol gene type direction distance location
LOC110496167 LOC106588455 coding downstream 48088 38557052 ~ 38563365 (-)
LOC110496166 LOC106588455 coding downstream 57521 38478939 ~ 38553932 (-)
zn706 LOC104962755 coding downstream 82945 38522603 ~ 38528524 (-)
LOC118940976 LOC106588460 coding downstream 91664 38517903 ~ 38519789 (-)
LOC110496165 LOC106588460 coding downstream 93379 38516015 ~ 38518074 (-)
LOC110496173 LOC106588288 coding upstream 30787 38648360 ~ 38665538 (-)
LOC110496175 LOC104924380 coding upstream 56805 38674378 ~ 38676029 (-)
LOC110496183 LOC106588442 coding upstream 346514 38964087 ~ 38972431 (-)
LOC110496188 LOC106588437 coding upstream 449291 39066864 ~ 39081723 (-)
LOC110496190 LOC106588434 coding upstream 499018 39116591 ~ 39146595 (-)
G1546331 NA non-coding downstream 6258 38604930 ~ 38605195 (-)
G1546330 NA non-coding downstream 6790 38604400 ~ 38604663 (-)
G1546316 NA non-coding downstream 26304 38584949 ~ 38585149 (-)
G1546313 NA non-coding downstream 29565 38581586 ~ 38581888 (-)
G1546312 NA non-coding downstream 30979 38580177 ~ 38580474 (-)
G1546376 NA non-coding upstream 72188 38689761 ~ 38689983 (-)
G1546379 NA non-coding upstream 73964 38691537 ~ 38691777 (-)
G1546380 NA non-coding upstream 77783 38695356 ~ 38696026 (-)
G1546382 NA non-coding upstream 79493 38697066 ~ 38702063 (-)
G1546402 LOC106588449 non-coding upstream 108716 38726289 ~ 38730601 (-)
G1546053 NA other downstream 397404 38165250 ~ 38214049 (-)
LOC110496154 LOC106588291 other downstream 459221 38121576 ~ 38152320 (-)
ppt1 LOC106588481 other downstream 688119 37922153 ~ 37930745 (-)
G1544806 NA other downstream 1309279 37301508 ~ 37302174 (-)
G1546385 LOC106588448 other upstream 150524 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 158711 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 1008202 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 1025282 39642841 ~ 39688750 (-)

Expression


Co-expression Network