LOC110496173 (LOC106588288)


Basic Information

Item Value
gene id LOC110496173
gene name LOC106588288
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38648360 ~ 38665538 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571922.2
CGCTCACGGCGAAAGTTTTCAAATAATTGAATTGTTTAAAGTTGTTTGAACTTTGCTTTTTAAGACAGGGCAATATAAAAAATAAGGACATAATGACGTTACACGGACATTACATAAAATATGTTTTAGTGTGTGCTGACGTGTAGGCATGGAATGATCGAGAAACAAAAAGAAGCAGATAAGAAGTTCATTTGGGTGTGTTTGTGGCTTAGCGCCTTAATTAACGATCCTGTATAATTGACTTAGCCCAACCTGCAGGTGTAGCAGGATCCCACTTTGCTCTCCGCTGACCATGAATATCACTTTCATCTTGACTTGTCTCCGCTGAGTCACTCACACAGAGTTGCTTTTCAAGGGGTCAAGCGAAAAGCCTGCTTTACAGAGAGAAGGACCCAGCCTCCCAGCTTCTGGATATCATACATTGTCAGGACGTACAAaagaacacacacatcacagtccGTGTTGATATACATTTGCCTTTTAAAAGACACAACGGGGCTATTTCTTTCACCTGAAAACACAACATGGGGAACGCCAAGAGCAGCGCCGTCTCCAAGGAGATCCTGGAAGACCTGAAGCTCAGCACCAAGTTCACTGAGACGGAGATCACCCAGTGGTACGAGAGCTTCCAGAAGTCGTGTCCCTCTGGACGTATCACGCCCAAGGAGTTCGAGGTCATCTACAGCCGCTTCTTCCCCGAGAGCAACGCCCAGACGTACGCGCAGCACGTCTTCCGTTCCTTCGACACCAACGACGACGGCACTCTGGACTTCAAGGAGTACATAATTGCGCTGCACCTGACGTCCACGGGCAAGACCACCAGGAAGCTGGAGTGGGCCTTCTCGCTGTTCGACGTGGACAAGAACGGATACATCACCAAGTCGGAAGTGACCGATATCTGCAGCGCTATTTTCAAGCTaattcccaaggatgaacaagctGAGCTGCCCAATGACGAGAACACACCGGAGAAGAGGGCCAACAAACTCTGGACATTCTTTGAGAAAGAAGACAATGaGCGAGTTGCAGAAGGAGAGTTCATCAAGGGTGTGATGGACAATGAGGATGCACTTCGCCTCATTCAATATGAACCTGCCAACAAGTAACCCTCTGCTAATAAAGTCCTATGGTCATAGGacatgaccataggagttgacaagacagcacaaacagatctgggatctgcGCTCCTACATTCCACATTCCCCACCCCTATCCTCAATTTACCCATCATAATGCAGAAAGTATTTCGTTTTAATCCCAGTCTAACTTCAATGTTTATCGGACTTCGGTTCAAATAGTATATGTTTTCCTCCAAATACTTTAGCTGCGCGTGATTGTAAAAACATACCATGAACCcgcaaccctggcgttgcaagcgctatgctctaccaactgagctacacgggaCATTACTttttactatatactgtatactggtatTGTTTTTAcgatatactgtatactggtactgCTTTTACGATATTCTGTATACTGGTATTGTttttactatatactgtatactggtactgtttttacaatatactgtatactggtatTGTTTTTACTATATACTGGTATTGTTTTTACTCTATACTGGTATTGTttttactatatactgtatattttgggACTTGATATTTAGCTTTGGAATGTTTTGAGAAAGGGTAAAGAGTATTAAGAGCTGGTAAGAGGGGTTTAGAAAATGAAAGCAAGCAATGAGTAATCTGATGATACTTCATACCAGACGTGCTACTCATT
>XM_036952707.1
TTTGTTCTTATTCAACTCAAGTGTTGATAACGGACAACAAGTCTTAGTGAAGAAGCCCAACCTGCAGGTGTAGCAGGATCCCACTTTGCTCTCCGCTGACCATGAATATCACTTTCATCTTGACTTGTCTCCGCTGAGTCACTCACACAGAGTTGCTTTTCAAGGGGTCAAGCGAAAAGCCTGCTTTACAGAGAGAAGGACCCAGCCTCCCAGCTTCTGGATATCATACATTGTCAGGACGTACAAaagaacacacacatcacagtccGTGTTGATATACATTTGCCTTTTAAAAGACACAACGGGGCTATTTCTTTCACCTGAAAACACAACATGGGGAACGCCAAGAGCAGCGCCGTCTCCAAGGAGATCCTGGAAGACCTGAAGCTCAGCACCAAGTTCACTGAGACGGAGATCACCCAGTGGTACGAGAGCTTCCAGAAGTCGTGTCCCTCTGGACGTATCACGCCCAAGGAGTTCGAGGTCATCTACAGCCGCTTCTTCCCCGAGAGCAACGCCCAGACGTACGCGCAGCACGTCTTCCGTTCCTTCGACACCAACGACGACGGCACTCTGGACTTCAAGGAGTACATAATTGCGCTGCACCTGACGTCCACGGGCAAGACCACCAGGAAGCTGGAGTGGGCCTTCTCGCTGTTCGACGTGGACAAGAACGGATACATCACCAAGTCGGAAGTGACCGATATCTGCAGCGCTATTTTCAAGCTaattcccaaggatgaacaagctGAGCTGCCCAATGACGAGAACACACCGGAGAAGAGGGCCAACAAACTCTGGACATTCTTTGAGAAAGAAGACAATGaGCGAGTTGCAGAAGGAGAGTTCATCAAGGGTGTGATGGACAATGAGGATGCACTTCGCCTCATTCAATATGAACCTGCCAACAAGTAACCCTCTGCTAATAAAGTCCTATGGTCATAGGacatgaccataggagttgacaagacagcacaaacagatctgggatctgcGCTCCTACATTCCACATTCCCCACCCCTATCCTCAATTTACCCATCATAATGCAGAAAGTATTTCGTTTTAATCCCAGTCTAACTTCAATGTTTATCGGACTTCGGTTCAAATAGTATATGTTTTCCTCCAAATACTTTAGCTGCGCGTGATTGTAAAAACATACCATGAACCcgcaaccctggcgttgcaagcgctatgctctaccaactgagctacacgggaCATTACTttttactatatactgtatactggtatTGTTTTTAcgatatactgtatactggtactgCTTTTACGATATTCTGTATACTGGTATTGTttttactatatactgtatactggtactgtttttacaatatactgtatactggtatTGTTTTTACTATATACTGGTATTGTTTTTACTCTATACTGGTATTGTttttactatatactgtatattttgggACTTGATATTTAGCTTTGGAATGTTTTGAGAAAGGGTAAAGAGTATTAAGAGCTGGTAAGAGGGGTTTAGAAAATGAAAGCAAGCAATGAGTAATCTGATGATACTTCATACCAGACGTGCTACTCATT

Function

NR:

description
visinin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571922.2 False 1761 mRNA 0.43 4 38648360 38665437
XM_036952707.1 True 1570 mRNA 0.44 5 38648360 38665538

Neighbor

gene id symbol gene type direction distance location
LOC110496170 LOC106588454 coding downstream 30787 38611453 ~ 38617573 (-)
LOC110496167 LOC106588455 coding downstream 84995 38557052 ~ 38563365 (-)
LOC110496166 LOC106588455 coding downstream 94428 38478939 ~ 38553932 (-)
zn706 LOC104962755 coding downstream 119852 38522603 ~ 38528524 (-)
LOC118940976 LOC106588460 coding downstream 128571 38517903 ~ 38519789 (-)
LOC110496175 LOC104924380 coding upstream 8840 38674378 ~ 38676029 (-)
LOC110496183 LOC106588442 coding upstream 298549 38964087 ~ 38972431 (-)
LOC110496188 LOC106588437 coding upstream 401326 39066864 ~ 39081723 (-)
LOC110496190 LOC106588434 coding upstream 451053 39116591 ~ 39146595 (-)
LOC110496197 LOC106588427 coding upstream 567583 39233121 ~ 39245055 (-)
G1546331 NA non-coding downstream 43165 38604930 ~ 38605195 (-)
G1546330 NA non-coding downstream 43697 38604400 ~ 38604663 (-)
G1546316 NA non-coding downstream 63211 38584949 ~ 38585149 (-)
G1546313 NA non-coding downstream 66472 38581586 ~ 38581888 (-)
G1546312 NA non-coding downstream 67886 38580177 ~ 38580474 (-)
G1546376 NA non-coding upstream 24223 38689761 ~ 38689983 (-)
G1546379 NA non-coding upstream 25999 38691537 ~ 38691777 (-)
G1546380 NA non-coding upstream 29818 38695356 ~ 38696026 (-)
G1546382 NA non-coding upstream 31528 38697066 ~ 38702063 (-)
G1546402 LOC106588449 non-coding upstream 60751 38726289 ~ 38730601 (-)
G1546053 NA other downstream 434311 38165250 ~ 38214049 (-)
LOC110496154 LOC106588291 other downstream 496128 38121576 ~ 38152320 (-)
ppt1 LOC106588481 other downstream 725026 37922153 ~ 37930745 (-)
G1544806 NA other downstream 1346186 37301508 ~ 37302174 (-)
G1546385 LOC106588448 other upstream 102559 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 110746 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 960237 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 977317 39642841 ~ 39688750 (-)

Expression


Co-expression Network