LOC110496175 (LOC104924380)


Basic Information

Item Value
gene id LOC110496175
gene name LOC104924380
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38674378 ~ 38676029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952708.1
GTGTGACCATGGGGCTCTGTGATGGCCTGTCCCACTGTAAACTGGCCCTGGCCTTTGCAGTGCTGATGGACTTGCTGGGTGGCACCGCCTTGCTGGTGGGAGTCTTTGTCCCTCTGAATATCAAAGGCAGGGACTTTGGGGACCTCCTGGTGTACACAGGAGCACTGTTCGTGCTCATGTCCCTGGGGGGCTGGGTGCTGTGGTACAGCGGAAACATTGACGGCCTCGTCTCCAGCAAAGAGCTTGGCCACATCGGCACCACCGTGGACCGGCTGGCCCGCACCCTCAGCCGCAAGATGCATATCCATCGCCACAGGGGGCCTTAGGGCTGTGGCAACTGGCCATAAAAGCAGGCTTTCCATCTACACATTGGTGGGTGGATGCCAGACATGTATTGGATCAATCACCCccaatctcccctcacattgaacAATTTCTATAGTTCTTGTGCTAGTGCAGTATTTTACATTTTATTCTGAGACTTGTGTCCAGCAGTATTAATGTGTGATGGGTAATTAGCACTGTTTAATGCCAAGCAGTTGAAATGCACTCACCTAGCATGCTATGTCCCCTGTATATTACAAACTATTCATGTCCAAAGTTTTTAAAACACtttttattaaaaataataatgcaTTTGCTCATCTGTTACATCTGACATAGTGGATGTGATTTAACATTTCTTGTGTGGTGTGATTTCATTTAGAAAAATGGCCTTACACTCAATCATTTTCATTTAGTTATTTTGCTAATAAATGTTTCCTTGTGTGAACTT
>TU1769487
GAGAAAAACGCAAAAAAGTGAAAAGGTGGGATCGAATTCCGGAAGATTACACAACGTGTCCAGGTGTGACCATGGGGCTCTGTGATGGCCTGTCCCACTGTAAACTGGCCCTGGCCTTTGCAGTGCTGATGGACTTGCTGGGTGGCACCGCCTTGCTGGTGGGAGTCTTTGTCCCTCTGAATATCAAAGGCAGGGACTTTGGGGACCTCCTGGTGTACACAGGAGCACTGTTCGTGCTCATGTCCCTGGGGGGCTGGGTGCTGTGGTACAGCGGAAACATTGACGGCCTCGTCTCCAGCAAAGAGCTTGGCCACATCGGCACCACCGTGGACCGGCTGGCCCGCACCCTCAGCCGCAAGATGCATATCCATCGCCACAGGGGGCCTTAGGGCTGTGGCAACTGGCCATAAAAGCAGGCTTTCCATCTACACATTGGTGGGTGGATGCCAGACATGTATTGGATCAATCACCCccaatctcccctcacattgaacAATTTCTATAGTTCTTGTGCTAGTGCAGTATTTTACATTTTATTCTGAGACTTGTGTCCAGCAGTATTAATGTGTGATGGGTAATTAGCACTGTTTAATGCCAAGCAGTTGAAATGCACTCACCTAGCATGCTATGTCCCCTGTATATTACAAACTATTCATGTCCAAAGTTTTTAAAACACtttttattaaaaataataatgcaTTTGCTCATCTGTTACATCTGACATAGTGGATGTGATTTAACATTTCTTGTGTGGTGTGATTTCATTTAGAAAAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952708.1 False 775 mRNA 0.46 2 38674378 38675377
TU1769487 True 775 TUCP 0.47 3 38674441 38676029

Neighbor

gene id symbol gene type direction distance location
LOC110496173 LOC106588288 coding downstream 8840 38648360 ~ 38665538 (-)
LOC110496170 LOC106588454 coding downstream 56805 38611453 ~ 38617573 (-)
LOC110496167 LOC106588455 coding downstream 111013 38557052 ~ 38563365 (-)
LOC110496166 LOC106588455 coding downstream 120446 38478939 ~ 38553932 (-)
zn706 LOC104962755 coding downstream 145870 38522603 ~ 38528524 (-)
LOC110496183 LOC106588442 coding upstream 288710 38964087 ~ 38972431 (-)
LOC110496188 LOC106588437 coding upstream 391487 39066864 ~ 39081723 (-)
LOC110496190 LOC106588434 coding upstream 441214 39116591 ~ 39146595 (-)
LOC110496197 LOC106588427 coding upstream 557744 39233121 ~ 39245055 (-)
LOC110496198 LOC106588427 coding upstream 571821 39247198 ~ 39262456 (-)
G1546331 NA non-coding downstream 69183 38604930 ~ 38605195 (-)
G1546330 NA non-coding downstream 69715 38604400 ~ 38604663 (-)
G1546316 NA non-coding downstream 89229 38584949 ~ 38585149 (-)
G1546313 NA non-coding downstream 92490 38581586 ~ 38581888 (-)
G1546312 NA non-coding downstream 93904 38580177 ~ 38580474 (-)
G1546376 NA non-coding upstream 14384 38689761 ~ 38689983 (-)
G1546379 NA non-coding upstream 16160 38691537 ~ 38691777 (-)
G1546380 NA non-coding upstream 19979 38695356 ~ 38696026 (-)
G1546382 NA non-coding upstream 21689 38697066 ~ 38702063 (-)
G1546402 LOC106588449 non-coding upstream 50912 38726289 ~ 38730601 (-)
G1546053 NA other downstream 460329 38165250 ~ 38214049 (-)
LOC110496154 LOC106588291 other downstream 522146 38121576 ~ 38152320 (-)
ppt1 LOC106588481 other downstream 751044 37922153 ~ 37930745 (-)
G1544806 NA other downstream 1372204 37301508 ~ 37302174 (-)
G1546385 LOC106588448 other upstream 92720 38768097 ~ 38773684 (-)
G1546396 LOC106588446 other upstream 100907 38776284 ~ 38787801 (-)
LOC110496208 LOC106588417 other upstream 950398 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 967478 39642841 ~ 39688750 (-)
G1548367 NA other upstream 1710593 40385970 ~ 40391883 (-)

Expression


Co-expression Network