LOC110496176 (LOC106588451)


Basic Information

Item Value
gene id LOC110496176
gene name LOC106588451
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38677975 ~ 38696088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952709.1
ATAGGTCAGTTACTGATAGGTCAGTAACCCATTTGCTGTacaataaaacaatataatttgTGCAAAATGTAGTTATGGGTTTTTGTAGTTGGTATCTGTCTTCCTAGatattaaattgatcagaaatgtgCTTGTGTTTATTACTAACTGGCTGGCCTCTGAACAATTGTCCAGAATTCCTctgctcaacacacacacaagattaGCGTTATTCCATGCCGACAGAGGGCATCCAAATTCCTTGTGTCCAGTCTTGATTCAAACAGATGTTTATTTGTAGCCTTGGTAGCTAAACTAACAAGATCAAGTCATTAAATCGAGGTCCATAATGTTGATGAATTCGAGAGACTGTTGACTGAAAATAAGAAAGAGCGGGACAAGGAGAATCGGCACCGTCGGCGCACACTGTCCCGCAGTCGCAGccgagagaggaagaagaggagctgGGAAAGGAGGAAGAGTAGGGCAAGCCGCAGCGACAGCAAGGACCATCAACACAGGCGCAGGTGGATACCGCTGTTCAAGTATTTGAAATGAGATCCATTCCCATTTTGTGCGAATAGTTGTCAGCTTTGTGGACCATTGGCTTGTTTCAAATTTTTCTTTCCCCACCTTTATGCAACAGTAAACGGAATACCCATGTTTTAACTGTCATTTCAGCACACAGACTCAAAAACAATCCCAAGAGACTGTCGTGAGCTACAGCAATACAGCGGACAGTGACTTGCATGACACCTTCAAAGTATAACTGCTAATAATGAGTCAGCTGTCCATATGTTGGTTAAGTACTGTACTTGGTGGTTGTGAGTACTAACGTTAGAATTGCTTCTTAATACAATTTCAAGGTAAGGGGTGAAGACTTGGATCTGTAGCTGTCTTAGAGGCTTGCTTTGAAGTCCGTGCTTATATTTTGGTCGATATCTGATGTCTAATTCATATAAAAATGTGACCATGTAGATTCCAGGAAGATAGAGTTCTGAAAGGAATGTGTTATAACTATCCAtccaaaatgtatacatttttaatATCCCTTTGATTCCCATACTTTTGTGCTATTCGTTGTCCTCTCTCCACACAGTCTCTGCATTGCAAGGCTATATGTccatctctcctgtcctgtcccctaCTGTTTCTCTCCTGCAGTCGCTCTCCAGCTCtgcacagagagaagaagaaagtgaGGAAGTACTGGGATGTTCCGGCACCAGGCTTCGAGCATATCACCCCCCCTGCAGTACAACGCTTTGCAGGGCCATTGCAGGGTTGAATGGGATGCAGCTGGGGGACAAGAAGCTCCTGGTCCAGAGAGCCAGTGTTGGGGCCAAGAACATAGCGCTGaCAGGTAAGAACCAGACCCTGGTGACCCTCCAAGTGCCAGGCCTGATGCCCACCTCCATGGCCTTGCTGGGTGGCCTGCCCACTGAGGTGCTCTGCCTGATGAACATGGTGGTTTTGGAGGAGCTGCTGGATGACGAGGAGTACGAGGAGATCGCGGAGGACGTCCGCGGTGAGTGCAGCAAGTACGGCCAGGTGAAGAGCATCGAGATCCCCCGACCTGTGGATGGACTTGAGGTCCCAGGCACTGGGAAGatCTTTGTGGAGTTCATGACCCTGTTTGACTCCCAGAAGGCCATGCAGGCGCTGACAGGCAGGAAGTTTGCCAACAGGATGGTGGTGACCAAGTACTGTGACCCAGACGCCTACCACCGCCGAGACTTCTGGTAGACCTgagaaccagagagagggagagaagcagagtTTCATGTTATTTATGTAACGATATGAATATTTATGAGCATCACAACACTCAACTTTTTGCACTTTTTTAAAGAGGAGGCGTAGAAAGTTCATTTAAGGCCACTTATCACTGAAATCAGCAGAATTGGTTGAAGTATTACTTTTGTCCTCGTCGCTTATGATTTCATTCAATGAATCAAGTTCAATCATGATTTTAACCATTTATTTTGTCCATGCCTGAGCCTCAGGTACCAGTTGTTTATTGTTACACCAAATGACCaacagtatgtgaacacctgctcatcgaacatctcattccaaaatcatgggcattaatatggagttgttcccccctttgctgcaataacaaccaccactgttctgggaaggctttccactatttgttggaacattgctgcggggacttgtccaagagcattagtgaggtcaaggcactgatgttgggcgattaggcctggctcgcactTGGCGTTTCAATTAATCTCAAAGGTGTTCAATGAggttgatgtcagggctctgtgtaagccagtcaagttgttccacaccgatctcgacaaaccatttctgtatggaccttgctttgtgcatagaggcattgtcatgctgaaacagaaaaaggccttctcaa
>XM_036952710.1
ATAGGTCAGTTACTGATAGGTCAGTAACCCATTTGCTGTacaataaaacaatataatttgTGCAAAATGTAGTTATGGGTTTTTGTAGTTGGTATCTGTCTTCCTAGatattaaattgatcagaaatgtgCTTGTGTTTATTACTAACTGGCTGGCCTCTGAACAATTGTCCAGAATTCCTctgctcaacacacacacaagattaGCGTTATTCCATGCCGACAGAGGGCATCCAAATTCCTTGTGTCCAGTCTTGATTCAAACAGATGTTTATTTGTAGCCTTGGTAGCTAAACTAACAAGATCAAGTCATTAAATCGAGGTCCATAATGTTGATGAATTCGAGAGACTGTTGACTGAAAATAAGAAAGAGCGGGACAAGGAGAATCGGCACCGTCGGCGCACACTGTCCCGCAGTCGCAGccgagagaggaagaagaggagctgGGAAAGGAGGAAGAGTAGGGCAAGCCGCAGCGACAGCAAGGACCATCAACACAGGCGCAGCACACAGACTCAAAAACAATCCCAAGAGACTGTCGTGAGCTACAGCAATACAGCGGACAGTGACTTGCATGACACCTTCAAAGTATAACTGCTAATAATGAGTCAGCTGTCCATATGTTGGTTAAGTACTGTACTTGGTGGTTGTGAGTACTAACGTTAGAATTGCTTCTTAATACAATTTCAAGGTAAGGGGTGAAGACTTGGATCTGTAGCTGTCTTAGAGGCTTGCTTTGAAGTCCGTGCTTATATTTTGGTCGATATCTGATGTCTAATTCATATAAAAATGTGACCATGTAGATTCCAGGAAGATAGAGTTCTGAAAGGAATGTGTTATAACTATCCAtccaaaatgtatacatttttaatATCCCTTTGATTCCCATACTTTTGTGCTATTCGTTGTCCTCTCTCCACACAGTCTCTGCATTGCAAGGCTATATGTccatctctcctgtcctgtcccctaCTGTTTCTCTCCTGCAGTCGCTCTCCAGCTCtgcacagagagaagaagaaagtgaGGAAGTACTGGGATGTTCCGGCACCAGGCTTCGAGCATATCACCCCCCCTGCAGTACAACGCTTTGCAGGGCCATTGCAGGGTTGAATGGGATGCAGCTGGGGGACAAGAAGCTCCTGGTCCAGAGAGCCAGTGTTGGGGCCAAGAACATAGCGCTGaCAGGTAAGAACCAGACCCTGGTGACCCTCCAAGTGCCAGGCCTGATGCCCACCTCCATGGCCTTGCTGGGTGGCCTGCCCACTGAGGTGCTCTGCCTGATGAACATGGTGGTTTTGGAGGAGCTGCTGGATGACGAGGAGTACGAGGAGATCGCGGAGGACGTCCGCGGTGAGTGCAGCAAGTACGGCCAGGTGAAGAGCATCGAGATCCCCCGACCTGTGGATGGACTTGAGGTCCCAGGCACTGGGAAGatCTTTGTGGAGTTCATGACCCTGTTTGACTCCCAGAAGGCCATGCAGGCGCTGACAGGCAGGAAGTTTGCCAACAGGATGGTGGTGACCAAGTACTGTGACCCAGACGCCTACCACCGCCGAGACTTCTGGTAGACCTgagaaccagagagagggagagaagcagagtTTCATGTTATTTATGTAACGATATGAATATTTATGAGCATCACAACACTCAACTTTTTGCACTTTTTTAAAGAGGAGGCGTAGAAAGTTCATTTAAGGCCACTTATCACTGAAATCAGCAGAATTGGTTGAAGTATTACTTTTGTCCTCGTCGCTTATGATTTCATTCAATGAATCAAGTTCAATCATGATTTTAACCATTTATTTTGTCCATGCCTGAGCCTCAGGTACCAGTTGTTTATTGTTACACCAAATGACCaacagtatgtgaacacctgctcatcgaacatctcattccaaaatcatgggcattaatatggagttgttcccccctttgctgcaataacaaccaccactgttctgggaaggctttccactatttgttggaacattgctgcggggacttgtccaagagcattagtgaggtcaaggcactgatgttgggcgattaggcctggctcgcactTGGCGTTTCAATTAATCTCAAAGGTGTTCAATGAggttgatgtcagggctctgtgtaagccagtcaagttgttccacaccgatctcgacaaaccatttctgtatggaccttgctttgtgcatagaggcattgtcatgctgaaacagaaaaaggccttctcaa
>TU1768487
ACAGATGTTTATTTGTAGCCTTGGTAGCTAAACTAACAAGATCAAGTCATTAAATCGAGGTCCATAATGTTGATGAATTCGAGAGACTGTTGACTGAAAATAAGAAAGAGCGGGACAAGGAGAATCGGCACCGTCGGCGCACACTGTCCCGCAGTCGCAGccgagagaggaagaagaggagctgGGAAAGGAGGAAGAGTAGGGCAAGCCGCAGCGACAGCAAGGACCATCAACACAGGCGCAGGTGGATACCGCTGTTCAAGTATTTGAAATGAGATCCATTCCCATTTTGTGCGAATAGTTGTCAGCTTTGTGGACCATTGGCTTGTTTCAAATTTTTCTTTCCCCACCTTTATGCAACAGTAAACGGAATACCCATGTTTTAACTGTCATTTCAGCACACAGACTCAAAAACAATCCCAAGAGACTGTCGTGAGCTACAGCAATACAGCGGACAGTGACTTGCATGACACCTTCAAAGTATAACTGCTAATAATGAGTCAGCTGTCCATATGTTGGTTAAGTACTGTACTTGGTGGTTGTGAGTACTAACGTTAGAATTGCTTCTTAATACAATTTCAAGGTAAGGGGTGAAGACTTGGATCTGTAGCTGTCTTAGAGGCTTGCTTTGAAGTCCGTGCTTATATTTTGGTCGATATCTGATGTCTAATTCATATAAAAATGTGACCATGTAGATTCCAGGAAGATAGAGTTCTGAAAGGAATGTGTTATAACTATCCAtccaaaatgtatacatttttaatATCCCTTTGATTCCCATACTTTTGTGCTATTCGTTGTCCTCTCTCCACACAGTCTCTGCATTGCAAGGCTATATGTccatctctcctgtcctgtcccctaCTGTTTCTCTCCTGCAGTCGCTCTCCAGCTCtgcacagagagaagaagaaagtgaGGAAGTACTGGGATGTTCCGGCACCAGGCTTCGAGCATATCACCCCCCCTGCAGTACAACGCTTTGCAGGGTCAGTTTGGCAATACATGTCAGCTCTCACTATAATAGTGTCACATCACAGTCCGTATTATGTCTGCTCAAAAGCAAAGGCTGTTGATGTGATATTGTATGAAAGTATTCAACTCAGTCCCTCTCTCacttcatacatatacagtacaagtcaaacatttggacacaccta
>TU1768490
GAGCCAGTGTTGGGGCCAAGAACATAGCGCTGaCAGGTAAGAACCAGACCCTGGTGACCCTCCAAGTGCCAGGCCTGATGCCCACCTCCATGGCCTTGCTGGGTGGCCTGCCCACTGAGGTGCTCTGCCTGATGAACATGGTGGTTTTGGAGGAGCTGCTGGATGACGAGGAGTACGAGGAGATCGCGGAGGACGTCCGCGGTGAGTGCAGCAAGTACGGCCAGGTGAAGAGCATCGAGATCCCCCGACCTGTGGATGGACTTGAGGTCCCAGGCACTGGGAAGGTGAGGACGGGGAGGGGAATAGGGGTACCTGGGTattaggatgggataggatagggcATGGGGTGTTTGTTGCAGTGTTTTGAG
>TU1768478
ATTTTAACCATTTATTTTGTCCATGCCTGAGCCTCAGGTACCAGTTGTTTATTGTTACACCAAATGACCaacagtatgtgaacacctgctcatcgaacatctcattccaaaatcatgggcattaatatggagttgttcccccctttgctgcaataacaaccaccactgttctgggaaggctttccactatttgttggaacattgctgcggggacttgtccaagagcattagtgaggtcaaggcactgatgttgggcgattaggcctggctcgcactTGGCGTTTCAATTAATCTCAAAGGTGTTCAATGAggttgatgtcagggctctgtgtaagccagtcaagttgttccacaccgatctcgacaaaccatttctgtatggaccttgctttgtgcatagaggcattgtcatgctgaaacagaaaaaggccttctcaaactgttgccacaaagttggaatcgTTTtgcatgtcattgtatgctgtagcgttaagatttaccttcactggaactaaggggcctagcccgaaccatgaaaaacagccccagatcattattcctcctccacctaacTTTGCAGTTTgcattatgcattggggcaggtagcgttctcctggcatccgccaaacccagattcatccgtcagactgctagatggtgaagcgtgattcattactccagagaacgcctttccactgctccggagtccaatggtggcaagctttacaccactccagccgacgcttggcattctgcatggtgatcttaggcttgtgtgtgactgctcagccatggaaacccatttcatgaagctcccgacaaacagttcttgttctgacgttgcttccagaggcagtttggaactcggaattgagtgttgcaaccgaggacagacgatctTTACGCACTACGcgattcagcactcggcggtaccattctgtcagcttgtgtggcctaccactttgcgggtgagcagttgttgctcctagacgtttccacttcacaataacagtacttacagttgaccggggcagctctagcagggcaaaaatttgattaactgacctgttggaaaggtggcatcctatgacggtgccccattgaaagtcactgagctcttcagtaaggccattcttctgccaatgtttgtctatggagattgcatggctgtgtgcttgattgtatacacttgtcagcaactggtgtggcttaaatagccaaatccactaatttgaaggggtgtccatatatatatatatatatatatatataaaattttCAGAACATCAACTTATTGTGAGTTCTGACTCATGTCTGAGGGGACACGCAAATACTGTAAGTGTGGGTGTCTACATTTAACTTATCATCACCACCCTCTTTTGATAACAAAATGTCTGAAAATTATGTAATATTTTGACTTTGTGACTCTGGCACCAATTCTCAGTGGGCAACCCCCATTCCACAAGAAACAATATAGTATATTAACAGGAAGTACCTGATGAACCAGTCCAGATTCTGTAATAGAAGGCTCTCACCCAATCAGAGGTACTGTGACTGCCTCTGAAATTGATACagctgggtcgtgttcattagggcacaccgtagcaaaacgttttgcaacagaaaacaaatgTGTATTTCTTATTGGAAAAGTTCAGATCTCTCTGTTTTCTtcagtttggtgcctaatgaacacgaccctgaacTCTCCCCGCCcacaccttccctctctctctctccttagacAATCTGCTATACAGCTGAAAGACTTCAGAGTTATCACTGCCCTGCCTCGACCCTTGGTTGGTTTTGTAAAACATTATTGACATTGACTTACACTCACTAGgtaatattatttattatttcactgtaaaatCATATCTGCTGTATTTTTGTATTATGCTTTTATATGTTTCAATTGTAAGTTCCTATTTAACCCAGTAGAGCTCTCATGGCTTTGCCTCAATGTGAGATCTCTTTAGGACCCAAAGAGGCATGTGGATCTGCACGTGTGAGGCTTTCTGATGGGTGACATGAATTCAGGTTTATGACAGGCGAGACAATATCAAAGTGAAGATAATGTAGATAATTTGTAGGTGTGGATAGGCTCTATGATACAATATGAACCAATTACATACCCCCTTCTTCCACTTCCACACCTCTTTCCCATTTAATCGTTTTCATTGTCTATACTACAAGCACCACACTTGGAGGAACCTGTCTGACATTGTTTTTCGTTCTATTCCCATCCCCTTCTCCAAGACCTTCCGTTGCTTCGAATTACATAATGGATATTTATTTTGACAGGTTTTGCGCTCCAAATGCTGGTAGTCTCCTGAGGATCTTTCGATGATTTGCATTACCGAAC
>TU1768479
GCAAATACTGTAAGTGTGGGTGTCTACATTTAACTTATCATCACCACCCTCTTTTGATAACAAAATGTCTGAAAATTATGTAATATTTTGACTTTGTGACTCTGGCACCAATTCTCAGTGGGCAACCCCCATTCCACAAGAAACAATATAGTATATTAACAGGAAGTACCTGATGAACCAGTCCAGATTCTGTAATAGAAGGCTCTCACCCAATCAGAGGTACTGTGACTGCCTCTGAAATTGATACagctgggtcgtgttcattagggcacaccgtagcaaaacgttttgcaacagaaaacaaatgTGTATTTCTTATTGGAAAAGTTCAGATCTCTCTGTTTTCTtcagtttggtgcctaatgaacacgaccctgaacTCTCCCCGCCcacaccttccctctctctctctccttagacAATCTGCTATACAGCTGAAAGACTTCAGAGTTATCACTGCCCTGCCTCGACCCTTGGTTGGTTTTGTAAAACATTATTGACATTGACTTACACTCACTAGgtaatattatttattatttcactgtaaaatCATATCTGCTGTATTTTTGTATTATGCTTTTATATGTTTCAATTGTAAGTTCCTATTTAACCCAGTAGAGCTCTCATGGCTTTGCCTCAATGTGAGATCTCTTTAGGACCCAAAGAGGCATGTGGATCTGCACGTGTGAGGCTTTCTGATGGGTGACATGAATTCAGGTTTATGACAGGCGAGACAATATCAAAGTGAAGATAATGTAGATAATTTGTAGGTGTGGATAGGCTCTATGATACAATATGAACCAATTACATACCCCCTTCTTCCACTTCCACACCTCTTTCCCATTTAATCGTTTTCATTGTCTATACTACAAGCACCACACTTGGAGGAACCTGTCTGACATTGTTTTTCGTTCTATTCCCATCCCCTTCTCCAAGACCTTCCGTTGCTTCGAATTACATAATGGATATTTATTTTGACAGGTTTTGCGCTCCAAATGCTGGTAGTCTCCTGAGGATCTTTCGATGATTTGCATTACCGAACCATTTCCACATCTAAGACTGTTTGTTGTTTTCCTAAAACAGGTTGAAAGATTATGTAAGGAAATGTATTTGTCTCTGTCCTTATACCGTCAACAGGTTAGCATGTGGGAATTTTTGCACTCTGTCACTTCCCTCAACATTGTAAGGTTGTCTTTTTTTATTTACAGAAGGTCAGAGTGATCACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952709.1 False 2386 mRNA 0.46 5 38677975 38693973
XM_036952710.1 False 2232 mRNA 0.46 6 38677975 38693973
TU1768487 False 1160 lncRNA 0.43 2 38678237 38680035
TU1768490 False 368 TUCP 0.59 2 38690438 38691269
TU1768478 False 2368 lncRNA 0.43 1 38693536 38695903
TU1768479 True 1227 lncRNA 0.39 1 38694862 38696088

Neighbor

gene id symbol gene type direction distance location
LOC110496172 LOC106588452 coding upstream 32350 38632507 ~ 38645625 (+)
LOC110496171 LOC106588453 coding upstream 46281 38617802 ~ 38631694 (+)
si:ch211-171h4.3 LOC106588290 coding upstream 80617 38593275 ~ 38597358 (+)
LOC110496168 mag coding upstream 105645 38563969 ~ 38572330 (+)
LOC110496162 LOC106588459 coding upstream 181508 38482660 ~ 38496467 (+)
cnot3b LOC106588450 coding downstream 3148 38697121 ~ 38713314 (+)
LOC110496812 LOC106588449 coding downstream 22512 38716485 ~ 38730617 (+)
LOC110496178 LOC106588448 coding downstream 60092 38754065 ~ 38773708 (+)
LOC110496179 LOC106588446 coding downstream 82275 38776248 ~ 38787830 (+)
LOC110496813 LOC106570003 coding downstream 123291 38817264 ~ 38880268 (+)
G1545493 NA non-coding upstream 72482 38605268 ~ 38605493 (+)
G1545276 NA non-coding upstream 154142 38522599 ~ 38523833 (+)
G1545436 NA non-coding upstream 161043 38502789 ~ 38516932 (+)
G1545432 NA non-coding upstream 169173 38495407 ~ 38508802 (+)
G1545419 NA non-coding upstream 240288 38435118 ~ 38437687 (+)
G1545558 NA non-coding downstream 58591 38752564 ~ 38752793 (+)
G1545570 NA non-coding downstream 100517 38794490 ~ 38794949 (+)
G1545577 NA non-coding downstream 105685 38799658 ~ 38799909 (+)
G1545580 NA non-coding downstream 108589 38802562 ~ 38802847 (+)
G1545533 LOC104965079 other upstream 1971 38675027 ~ 38676004 (+)
LOC110496158 LOC106588463 other upstream 473520 38193174 ~ 38204538 (+)
G1544455 NA other upstream 1621488 37055983 ~ 37056487 (+)
G1544137 NA other upstream 1814792 36862923 ~ 36863183 (+)
G1544007 NA other upstream 1912742 36764294 ~ 36765233 (+)
G1546605 LOC106588434 other downstream 422515 39116488 ~ 39120019 (+)
G1546641 NA other downstream 439146 39133119 ~ 39146252 (+)
G1546713 LOC106569985 other downstream 664438 39358411 ~ 39372481 (+)
G1546817 LOC106588418 other downstream 773481 39467454 ~ 39469365 (+)
G1547334 LOC107666349 other downstream 1067240 39761213 ~ 39761503 (+)
G1545537 NA non-coding upstream 2887 38687260 ~ 38687551 (+)
G1545508 NA non-coding upstream 5331 38682663 ~ 38685107 (+)

Expression


Co-expression Network