LOC118941155 (LOC106588441)


Basic Information

Item Value
gene id LOC118941155
gene name LOC106588441
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38995842 ~ 38999455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952724.1
AAAAGACGGCTAGAAACGGATTCGTTTGGCTGCCGATCACAAGAGGCCCCCTGTGCCAAAAGGGATCACCGGGAGGCGGACACCTTGACAGCCATTTGTCCCGTTATGGAGCCAACATGCATTGTTTGATACAGCGACACAGTGATGAAGCACTAACAGCTTTAGCAGAGAGACAAGGTCCTGCGTGCTATAATACTTCTCAAAGAAATTGACCCTGTTGTACAGgggatttggggattttttttgCCATGTGTCAAATCAGCTTGCCAGCTGCCTCACGTGACAGTCTCCCTTGACAGGAGAGAAGCGAGACGTCGACCAAAGATGGCCGACAACGCCATCCCACCCCTGATGCTTTTGTCTACAGGGCAAACGCGTAGGGGTGGAGTACTTCCAGGTTTCATcctaccctctttccctcttttttcTCTACTCCTCTATACTCTCATATCTTCCTCAACGGCTGCTGTTAGTTTGCCGGGATTAGACTATGACTATGGAGCCCAGCCCAAGTTTGTTTGCACCCCAATTCCAGCGGACGCAGACCCCAGCTGCTTCACACCAGGCGGGGCAGCACACGGACCTGTCCACGACAGACCCAGCAGTAATGGGCATCATGGACCTGCTGCAGGGGCGCCCAATGGTAACGGCAGGAGGCCGATGGGAATGGGGATGGGGATAGGAATATCAGACGAAGCCAAATCCACCATCCTGCACCTTCGCGAGAGCCTGGTGCGGCAAAAGGAGACCATCTTAGACCAACGGGAGACGATCAGGGAACTGACTGCCAAGCTGACCCTCTGTGAGGGCTTTGGCCGGGGGGTGGGTCATCACGATGACCATCACGACGACCACCATGGAAACGCGCGTCACAACTCCCATCACCCGAGCTCGCATCACTCCTACCATGACGCTGACCACCACGGGGACCCACACTACCCACCGAACAATGGGCACCGATCAGACCCACACCACCGAGGGAAGGATAACTCTGGGAGCAAGCATGGGGCCTTCTCCCCTGAGCAGACTAGGAAAACGCTACAGACACTCAAGGAGAGGCTGGAGAACTTGCAGgccAGGAATTCCTCCAGCTCCTATTCAAGCTCACTGAGAGACCTCCTGCAACGCAAAATCAATGCACTTGAGAAGCAGCTCAACAATCACTACGGTGGGCATCATGATTATGGTCACCATGACGACCACCACGATGACCACCATGACGACCACCACGATGACCATCCGGACGACCACCACGACGACCACCATGAACCTGGTCACCGCGATGACCACCACGATGATCATCACGATGACCAACATGGACCGGGTCACCACGACGACCACCATGATGACGATCACGACACCCACACCCCCACCCGCTACAACAACCGCCCCAACAACCGTCAAAACAGTCACCATGATGACCATCACTATGACCGACACTATGACCGCCATTATGATCGTAGCCACGGCCGCCATGACACACACCATAACGACCACCATGACGATCACCATGACGACCATCCTGATGATCATCACGACGACCACCACGATGATCTTCACGATGACCACCGTGAAAACGGTGATGACCACCAAGGCAATGACGACCATGGCCATCGTCCTCGTCCAGCCTATAACAGCAAGCCACCACCTCCATTGCCTCTTGGCCGTGGACACAACAAGCTGGAAACTGTGCTGAGCCACCTTAACCACAGGAACTCTAACCCTGGTATTGAAACTCTCTGATAAATAACCCACTTTGCCATTGTATACTCTTGTCCGATTTATATCATGCATTCCAAGTTGTAGCTGTAGGTACAGACATAGTCAATGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952724.1 True 1831 mRNA 0.54 2 38995842 38999455

Neighbor

gene id symbol gene type direction distance location
LOC110496182 LOC106588443 coding upstream 37556 38946948 ~ 38958286 (+)
LOC110496814 LOC106570002 coding upstream 61923 38902212 ~ 38935725 (+)
LOC110496813 LOC106570003 coding upstream 115574 38817264 ~ 38880268 (+)
LOC110496179 LOC106588446 coding upstream 208012 38776248 ~ 38787830 (+)
LOC110496178 LOC106588448 coding upstream 222134 38754065 ~ 38773708 (+)
si:dkey-14o18.2 LOC106588441 coding downstream 54 38999509 ~ 39005360 (+)
LOC110496930 LOC106588286 coding downstream 7459 39006914 ~ 39009903 (+)
LOC110496187 LOC106588439 coding downstream 30002 39029457 ~ 39053644 (+)
LOC110496185 LOC106588438 coding downstream 54272 39053727 ~ 39065036 (+)
LOC110496189 LOC106588436 coding downstream 84941 39084396 ~ 39112480 (+)
G1545667 NA non-coding upstream 30004 38960505 ~ 38965838 (+)
G1545598 NA non-coding upstream 166152 38829232 ~ 38829690 (+)
G1545597 NA non-coding upstream 167161 38828471 ~ 38828681 (+)
G1545595 NA non-coding upstream 171386 38824228 ~ 38824456 (+)
G1545688 NA non-coding downstream 15434 39014889 ~ 39020160 (+)
G1546672 NA non-coding downstream 232243 39231698 ~ 39232206 (+)
G1546707 NA non-coding downstream 260817 39260272 ~ 39260791 (+)
G1546717 LOC106588422 non-coding downstream 290727 39290182 ~ 39290983 (+)
G1546713 LOC106569985 non-coding downstream 358956 39358411 ~ 39372481 (+)
LOC110496176 LOC106588451 other upstream 304573 38677975 ~ 38696088 (+)
G1545533 LOC104965079 other upstream 319838 38675027 ~ 38676004 (+)
LOC110496158 LOC106588463 other upstream 791387 38193174 ~ 38204538 (+)
G1544455 NA other upstream 1939355 37055983 ~ 37056487 (+)
G1544137 NA other upstream 2132659 36862923 ~ 36863183 (+)
G1546605 LOC106588434 other downstream 117033 39116488 ~ 39120019 (+)
G1546641 NA other downstream 133664 39133119 ~ 39146252 (+)
G1546817 LOC106588418 other downstream 467999 39467454 ~ 39469365 (+)
G1547334 LOC107666349 other downstream 761758 39761213 ~ 39761503 (+)

Expression


Co-expression Network