si:dkey-14o18.2 (LOC106588441)


Basic Information

Item Value
gene id si:dkey-14o18.2
gene name LOC106588441
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 38999509 ~ 39005360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951044.1
atgattgggaGTACCCGGAAAAAGCCAAAGAGTCCGGATGCTTTCCAGATTGGCTTCCCTATGCGCACTAACTACATGTATGGAAGGATAAAAAAGACCCTACTCATTGAAATCTTCACCCTCACTGTCTGCCTCTGGATAAAAGGGGGTTCAGGGCCTGGCCTCGGCACGCCCTTCTCCTACTCTGTCCCGGGACAGGCCAACGAACTGGTTCTGATCGAATGGGGCAACAATCCCATGGAACTACTGGTTAACGACAATGCAGTGACGTTGCCCATGGCTATGACGGATGGGAAGTGGCACCACCTGTGCATGACATGGTCGTCACACGATGGGCATTGGGAGGCCTTCCAGGATGGCGTCAAAAGGGGGTCTGGAGAGAACCTATCTGCATGGCATCCCATCAAGCCTGGTGGAGTCTTTATTCTGGGCCAGGAACAGGATACCCTAGGTGGCCGATTTGACGCCACCCAGTCCTTCGTGGGCGAGATGTCAGACCTCCAGTTGTGGTCCCGCGTTCTCACACCCAATGAAATCTATAGCCAGGCTTCCTGCGGAGGTCACCTGGCGGGTGACCTCATCTCCTGGACAGAGGCAGTGGTCGAGCTTCACGGCGGGGTCACCAAATACCCCTTTGACCCCTGCCACTAAGGACTACCCCACTCTGATGTTATTTAACGAGCTGTCTGGTGTGGCAGCAGGGCTCTGTGCACTACGCTGCAGACACATGACAGGCCCTTAGCGACAAACCAGGCTGGCCCTTAGCCATTCTGCAATTTtgccatccctttcctctctgttctgcttTCCCCCTCGCTGGGCCGAGGAACTGGGAAGACTTTAAAAGAGCAAAGGCTGGATTTAACTGAATGGCCATGACCGCTGCTGCTCCCGGGATCCAATACCGGTAATAGGATTCCCTGTCTTTAAATGGGTCCACCCATGTTTGCCTCGGGCCTCAGTAAAGCCCTTCATCAGTCAGGTGTTCAAAGAATCATAACATTTTACTGGGACATATTATGCCGGGATATGGTTCTCAAAATCCTAACACTCCAGATGTTATTTGTTCGTCTTTCTGTGTTTTTTTTGCTGGCGAGCAGGACGATACCAGTGACTAAAAGGAACGCACTGAGGCAGAATGCTCATAAACTAACTGTGGACAATATGGAATGAACAAACTAAAGGCACTCCAAACAGCCACATCGATGGCAAGTGTATGAGTTGGAAGACAATGATAACGATTTGATGATTGAATGTGATGAATGTGAGGTACtacattgtatttttttgtacatgaagatggaggaatggaggatcTCATCTATGGTtttagtttttttgggggggggggtggggggggtgtttAGCCTGTCTCAACTCTATCTTTCACGCAAAAATGTTAGAGGACTATTTTATACTACTGTGTTGTACACACGTGCAACTGATAAACGTTCCATTTCATTTTTCAGATGAATTTAGCTCTACCAATATCAACTGATCAACACTCAACTGGATTGTAATTTCTATCAGTGTGTCTGAAATGGCTGCCAGGTTTTATGAAACACCCGAGTTGAAGTTGTGGACATGAGCCCGCATAAATACAGGTTAACTGCCTGTCAAGAGGTCCTAAGCTAATGCTGACATCTCCATTGTAATCTTGTGGTTTTACAGGCAGATTTGCCTGACAAATAGAGCTCGGATCTAGATCCAGACTATTTCCGCGTTGTCATAGCAGACACATGCTCATAAATACATTCACGCATGAATGCACATGCACTCAAAACAGCTTGGGGAAGACAAACAATTCTGTAATGCTCTAAAAGGCTTATATTCAAAGTCAACCTCATTCAATGTTGGTTTTTATTAATTGGGTCCTGTGTTTTTTTATGCATGTAAAATGCTTATAAAAAtaggttttaaaaaaatatagccTGTCTTGAATATCAACTGTCAAAATCATAAACAAATACAAACCCTTCATTTTTTTTTGGTAAATATAAGGCATTttacacaacaacacatcatttCCTTGTCTATCCTTTCACTGTGGTCATCCCTTTTCTGTCTGTGAAAGCATTCAAATTAGGAATTGATTCAGTTGCATTTGCTTACTCACCCCCATTTCACTGTGGGCTATTAAGTTCGGAATGTCTATGTCTCATTGAATCACATGAACACTGATCGTAAAAGGGTCATCTGTTGTTGCCATGGTGATAGTATAGAGCTTAGCTGGACATGCCCCCCTGACCACTAATAGTCATTACAACCATTACAGTACATAACAATTACATTTTGTAGATATTTGTTAATGCACCTTTGTGAGAGGACATAGTGGTCTGTATTGTTGTGTAAGAGTTTATAACGCCAAGTTGAGCATTATAAAAACCCATGCTCCCATTTTCCTGTTAGTGGGCCAAATGTatgtgaagtaaaaaaaaaaaacacacaaaaaacaattaTGTTTCTCATttgttacaaataaaaaatactatTGATTCATTAATGAATGCTAATACAACTGGATATAATTCAGGTTAAACAGCATTGAATGCAGTTGTATAATCTGAATCTATGTTGCTTCCATAACGTTTGCTTAATCTCGCCTTTGGTATACATTTTAATCTGTATATAAAGACACACTCAAtagttttttctttctttcttgtctGTAAATATTGAACaaccttttatttatttgttcTTGTGTGTTTGGTCAAAAGTCCCTTTCCTTTGTGTGTAAGccaaaaacatgtcaaatgaatTGTAAAACTTAAATGAGGAATACATGAATAAAACTCTGTTAAATATGTTTCAATA

Function

NR:

description
neuronal pentraxin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951044.1 True 2817 mRNA 0.42 4 38999509 39005360

Neighbor

gene id symbol gene type direction distance location
LOC118941155 LOC106588441 coding upstream 54 38995842 ~ 38999455 (+)
LOC110496182 LOC106588443 coding upstream 41223 38946948 ~ 38958286 (+)
LOC110496814 LOC106570002 coding upstream 65590 38902212 ~ 38935725 (+)
LOC110496813 LOC106570003 coding upstream 119241 38817264 ~ 38880268 (+)
LOC110496179 LOC106588446 coding upstream 211679 38776248 ~ 38787830 (+)
LOC110496930 LOC106588286 coding downstream 1554 39006914 ~ 39009903 (+)
LOC110496187 LOC106588439 coding downstream 24097 39029457 ~ 39053644 (+)
LOC110496185 LOC106588438 coding downstream 48367 39053727 ~ 39065036 (+)
LOC110496189 LOC106588436 coding downstream 79036 39084396 ~ 39112480 (+)
LOC110496191 LOC106588431 coding downstream 175646 39181006 ~ 39187628 (+)
G1545667 NA non-coding upstream 33671 38960505 ~ 38965838 (+)
G1545598 NA non-coding upstream 169819 38829232 ~ 38829690 (+)
G1545597 NA non-coding upstream 170828 38828471 ~ 38828681 (+)
G1545595 NA non-coding upstream 175053 38824228 ~ 38824456 (+)
G1545688 NA non-coding downstream 9529 39014889 ~ 39020160 (+)
G1546672 NA non-coding downstream 226338 39231698 ~ 39232206 (+)
G1546707 NA non-coding downstream 254912 39260272 ~ 39260791 (+)
G1546717 LOC106588422 non-coding downstream 284822 39290182 ~ 39290983 (+)
G1546713 LOC106569985 non-coding downstream 353051 39358411 ~ 39372481 (+)
LOC110496176 LOC106588451 other upstream 308240 38677975 ~ 38696088 (+)
G1545533 LOC104965079 other upstream 323505 38675027 ~ 38676004 (+)
LOC110496158 LOC106588463 other upstream 795054 38193174 ~ 38204538 (+)
G1544455 NA other upstream 1943022 37055983 ~ 37056487 (+)
G1544137 NA other upstream 2136326 36862923 ~ 36863183 (+)
G1546605 LOC106588434 other downstream 111128 39116488 ~ 39120019 (+)
G1546641 NA other downstream 127759 39133119 ~ 39146252 (+)
G1546817 LOC106588418 other downstream 462094 39467454 ~ 39469365 (+)
G1547334 LOC107666349 other downstream 755853 39761213 ~ 39761503 (+)

Expression


Co-expression Network