LOC110496185 (LOC106588438)


Basic Information

Item Value
gene id LOC110496185
gene name LOC106588438
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39053727 ~ 39065036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952725.1
ATGACTCGGGCTAGGTTGATGCTGGGAGAGACCATTTTGAGTGACAGGCTTAGAGCTTGAAGCTTGGGAGGAAAGCGGCCAAATGATGGAGACAGATGGGGACCAAAACCAGGGCTCTACCAATGGAACCACTCCATCAGGGGTGAACTCCCGCCCCTCTCCAATGAACTCCATGTCCCTGTACGAGAGACAGGCTGTGCAGGCCCTTCAGGCGCTGCAGAGGCAGCCCAACGCAGCGCAGTACTTCCAGCAGCTGATGCTACAGCAACAGATCAACAGTGCCCAGCTACAAAACCTGGCTGCAGTACAACAGGCCACCCTTGCTGCCAGTCGTCAGTCCAGCACTCCCGCCAACAGCACCTCTCAGACCACAAGCACCACAGTCACATCTGTGAATGTAACCACTTCTGGGGGTGGTGCCATAACCAGCACCCGCGCTATAGGCCCAGGCTCCTCCGCGACATCCACTATAAGCCAATCAGTGCTGCTGGGCGGAAACACGGCAGGACAGGGACAGATGTATCTGAGAGTGAACCGGTCCCTGaggtctcccctctcctcccagctcaTCTTTATGCCTGGTAGCACGGCAACCACTGCCATGGCAACAGTCACCCAGCAGCCGCAGactcagcagcagcaacaacggGAAGATACACCTACTTCCTCCAGCAACCAATCAGACAATGACCAGGTACAGAACCTGGCTCTGCGATGTGTCAGCAGTCCCAAGGGGGTCGGGGTCAAGACTGAAACCCCAGTGAGGGGTGAACCAGCGACCTACCCCCTTGTCCAGTCATCTCACCAGCAGTTCAACCAGTCCACTCCACAGTCTACCACTAAACCAACCCAACAGCAACAGTCCCACATCAAGATCCCCACCTACATCCAGAGCTCCAACGCCAACCTGTCCTCTCTCAACCTCAAGACGGGCAACCACCACTCCAacaccccctcctcaccctccacctctGTCCCACTCTCACAGCTCCTCCTCTCCGGACCCAACTTTGGCCGGGGCGGGGCTATCACCACGGTTACCTCCGCCGCCACGGCGACGCACATTCTGGTGCCCACCTCCAATGCGCCCGCCCAGCCCCACAGTTACCAGGTGGCTGCTGCCACCATCAAGCCCAATGTTAGTACTCAAACACTGGTGGTTCAGCCTCTGCAGAAAAGCACTGTTAATGACAAGGGAGGCCACGGGAACGGTCCCGTTCCAATCCAGCCCAAAACTCAACAGGGTCTCCGTATGCCCCTGCAACTGCCATCCCGCAACCCGCCTCCCATCCTCCCCGCACCCCCCGCCAACAATCAGACTAGTGCTGCCCAGCCTCCGCCGCACATCCCAGTCCAGATAGTAGGAGCCAGGCAGAGCTCCATAGGAAGCCCCCAGGCTTTGGCCTTGGTCCAGGCCCGGAACACCTGTTCCCAGGATGGAGCTACTCTTCTGAGTAGTTCCAGCAGAGCCAGCATTCTCACCATGGTGGCCTCCATCACttccagagagggaggggtgataAACCGACGGACGGATTTAAAGAGCCTTCAATCAGCCCAGGAAACCCTCCCATTGGCCCACATCTCTCACGTGCATGCGCAAGCCAATCAGAATCAGAGACCTGGGCTGAAGCCAAGTCCAAATTGCACCTTGGCCAGCAACAACTCCTCTCAGTCCCAGGCAGCcatctctcctcccaccctctcccaTTCCTCCCACACTTTACCCCTGCCTTTGGTTGAGGCGAGCAGCACAGTAGTGGCTGCCAATGGAGAGTCTGTGTGTTCTCAGCCTCACCAGggTAAGTCGATGAAGAGGAAATCCGAGTCAGTCGCAGCCAATGACGAAGATGGTGCCCCTCCTCCCCACCTTGTTCCAATGAGTGAACactcccctgccctctcctcctccgccACGGAAGCAGGCTCTGGtccactttctccctctccctctcgttccCCTGCTCTCTCGATGTCCCGTATGGGGGGTGGCCAGGGGGAGAGAGCCCCCCCTCAACAGGCTGTGGTCAAACCCCACGTCCTCACCCACCTCATAGAAGGCTTCGTCATCCAGGAGGGAGCTGAACCTTtccctGTGAGTGGGCCAGTCAAGGAGCCAGCTAGAGAAGATTTGGCCATGGACAATCTAGACTCTAGTCAGCCTGAGACTGTGACTACAGCTACAGTGCTGAAGTGTGAGTACTGCAAAAGCTTCGCCCCAGCCAGACAGTTTAGAGGGACCAAGCGCTTCTGCTCCTTGACCTGTTCCAAGAGGTATAATGTGAGCTGCAGCCAGCATTTCCGCCTGCGACAGGGGGGTCACCTCTCCCACTCTGACGAGGACGGGGTCCTGAGGAGGAGGGTCCCCCACAGGACCAGCTCCGAGATCGCCAGTGCCAAAATAGCCGGGAGACCCTTACCAGTTAAGTGCCGCTCCGAGTCCAGCCGTTCGGAGGACGTCTCCAGCTGCGGGGAGGACGAGGACGATCCCATGTCCCTCTCCCCGGCCTCCTCTTCTTCCTGCCACCAGCCTCCGCCCACACTCCGATTGGAGGGCTCGGAGGCGCCCCACTTCTTGCCCGGCAGCCCCGCCCAGTGGAGTGTGGAGGAAGTGTCTCAGTTCATATCATCTCTGCAAGGCTGTGAGGAGCTGGCGGACCATTTCCTGTCGCAGGAGATTGACGGACAGGCCCTGCTGCTACTCCGAGAGGAGCATCTCATGTCCACCATGAACATCAAGCTCGGTCCCGCCCTCAAGATCTGTGCCCATATCAACAACCTGAGAGACTGAGAGGAAGAATGAacggaggaaaggagaggtactcccaagagaaaaaggagagaaagaagagaaaggaggTGACAATATGGCTGTTGAAATACTTTTGAACTGTATTAAGTGGGGTCCCTGTTGGTTTTACTATGTTTTGTCAAAACAAACAGAATGAAAAGCGGAGAAAATGAGCCTTCTATCCACAAAATGTGGACCTTAAATGTGGagtattatgttatattatgtgagtgagtgagcaaACCCTTTATGTGTGTAATATTTgcctatatatttaaatataccTTTGTTGGCTGGACTGCCTTTGTTTACGCTGTAGAAAATCATTGTGGAAGTTGTGGCCTTTAAGTAGTTTCGATGATCGAAAAAATAGTACTAGAACGGAGACGTCCGTTTAAAAAACAACGTGTTTCATATCATTCCTTATTTTTACGAGTTGTTATGAATGGTAAGGTCATATAAAGCAATGGACACATTGCCTTTGCCAACCATTACTGGGGAGTAGCTAATATATTGGCCTAAGAAACTTGACAAATAGAGGGAGACATGTTCTGTCCGCTGAAATGAGCAAGTAACTTACAATTGGTGCACAGGATTTATATTAAAAAACGTCCTTTTTAAAATGTCTGTGAAGTGGCAACAATAAGCTATGCGGATCTGAAGTACAGGGATACCCGATCCAAGTGATACCATCCCATAGGCTACTTCAGTTTTCTCAACATGTTTTAGATTATATGCCCTCCtgcttattttaaatgtttttctttttttacctaaacgggatcggtgtcccttaaCCGGGATGGTTGTTGCTCAATATGCGATAATGTGACTAGAAAACATTGTATACAACAGCAAACTttccgggacatagacatgtcttatatgggcaaaAAGCTTaagttcttgttaatctaactgcagtgtccaatttaccGTAGCTATTAAAGgaaaaaaaataccatgctattgtttgaggatagtgcacaacaacaaaacacttttatcacggcaactggtgatacattcacctctgaaggtaaataatgtacttacattcagtaatcttgctctgatttgtcatcctgagggtcccagagataaaatgtagtgtagttttgtttgaagaaatccatttttatattcaaatgtagtaACTGGTttctacagtttgaccccactgctGTCTCTAGCACCACACCCACCCCGCCCGGCCATCTAGAAATAAATTATTTCTAGGGAAATAATGAAAACGCATGTTTTttggtttgtattatcttttaccagatgtaatgtgttatattatcctacattaattacacatttccacaaacttcagtgtttcctttcaaatggtatcaagaatatgcatatccttacttcaggtcctgagctacaggcagttagatttgggtatgtcagtTTAGgcgaaaaaaaaagaaagaagttCAATCCTTAATCTTAAGTAAGGTCTTTGCAGTTTTACACACAGGAAGAGCTATTTACAGTAGGGATAGAAAATGTCACCAAGGTCGTGCTCATTAGGCATCAAACGGAAGGAAACTGACTGAAACAgagagggactacctggacttatCCAATAAGAATCAGTCATTTTCATGctgcgtgccctaatgaacatgaccctgggtTGTGGTCTTCCTCATAGCTTTCCTCATAACTTGCACCTATCCAAGGCTCTTGTGACAGTAGCAATGACTGTGGCTATTATGAATAATCAATAATCTTATGATTAGGTGCTCTGCTAATTGTGTGTTTTTAAATTTAAAGCTTGGCGAAGGCTAGGTCAATATcatgcaaaaaataataataaaccaaCTACTAGGACAACACGCA
>XM_021571931.2
TTTCAAGATGCAGCTACAGTGTAACAGGGAGCATCACATACACTGTTGCAATTACTGACATATTAACCGTGTTGCTATTGCAGGTAGAGATGACATTGTAACTATGTTGTTGTGAAAACATTTTGGCACGCGACCTATGTGTGCCGTCATTCCTTTGCGCCGGAAAGGGACAAACATCAAAAGGAGGCGTTGTCCTCCGCACAATTTTATGCAAAATATCAACAACCTAATTGAATGTACTGCAATATCGTCGTGCAAAAGGAATTGTTGCATACTGCGACGCATTGAAGTCGAGAGAGAAACAAAAGTGGCAATACACCGACGTCCACGTGATGGAGACAGATGGGGACCAAAACCAGGGCTCTACCAATGGAACCACTCCATCAGGGGTGAACTCCCGCCCCTCTCCAATGAACTCCATGTCCCTGTACGAGAGACAGGCTGTGCAGGCCCTTCAGGCGCTGCAGAGGCAGCCCAACGCAGCGCAGTACTTCCAGCAGCTGATGCTACAGCAACAGATCAACAGTGCCCAGCTACAAAACCTGGCTGCAGTACAACAGGCCACCCTTGCTGCCAGTCGTCAGTCCAGCACTCCCGCCAACAGCACCTCTCAGACCACAAGCACCACAGTCACATCTGTGAATGTAACCACTTCTGGGGGTGGTGCCATAACCAGCACCCGCGCTATAGGCCCAGGCTCCTCCGCGACATCCACTATAAGCCAATCAGTGCTGCTGGGCGGAAACACGGCAGGACAGGGACAGATGTATCTGAGAGTGAACCGGTCCCTGaggtctcccctctcctcccagctcaTCTTTATGCCTGGTAGCACGGCAACCACTGCCATGGCAACAGTCACCCAGCAGCCGCAGactcagcagcagcaacaacggGAAGATACACCTACTTCCTCCAGCAACCAATCAGACAATGACCAGGTACAGAACCTGGCTCTGCGATGTGTCAGCAGTCCCAAGGGGGTCGGGGTCAAGACTGAAACCCCAGTGAGGGGTGAACCAGCGACCTACCCCCTTGTCCAGTCATCTCACCAGCAGTTCAACCAGTCCACTCCACAGTCTACCACTAAACCAACCCAACAGCAACAGTCCCACATCAAGATCCCCACCTACATCCAGAGCTCCAACGCCAACCTGTCCTCTCTCAACCTCAAGACGGGCAACCACCACTCCAacaccccctcctcaccctccacctctGTCCCACTCTCACAGCTCCTCCTCTCCGGACCCAACTTTGGCCGGGGCGGGGCTATCACCACGGTTACCTCCGCCGCCACGGCGACGCACATTCTGGTGCCCACCTCCAATGCGCCCGCCCAGCCCCACAGTTACCAGGTGGCTGCTGCCACCATCAAGCCCAATGTTAGTACTCAAACACTGGTGGTTCAGCCTCTGCAGAAAAGCACTGTTAATGACAAGGGAGGCCACGGGAACGGTCCCGTTCCAATCCAGCCCAAAACTCAACAGGGTCTCCGTATGCCCCTGCAACTGCCATCCCGCAACCCGCCTCCCATCCTCCCCGCACCCCCCGCCAACAATCAGACTAGTGCTGCCCAGCCTCCGCCGCACATCCCAGTCCAGATAGTAGGAGCCAGGCAGAGCTCCATAGGAAGCCCCCAGGCTTTGGCCTTGGTCCAGGCCCGGAACACCTGTTCCCAGGATGGAGCTACTCTTCTGAGTAGTTCCAGCAGAGCCAGCATTCTCACCATGGTGGCCTCCATCACttccagagagggaggggtgataAACCGACGGACGGATTTAAAGAGCCTTCAATCAGCCCAGGAAACCCTCCCATTGGCCCACATCTCTCACGTGCATGCGCAAGCCAATCAGAATCAGAGACCTGGGCTGAAGCCAAGTCCAAATTGCACCTTGGCCAGCAACAACTCCTCTCAGTCCCAGGCAGCcatctctcctcccaccctctcccaTTCCTCCCACACTTTACCCCTGCCTTTGGTTGAGGCGAGCAGCACAGTAGTGGCTGCCAATGGAGAGTCTGTGTGTTCTCAGCCTCACCAGggTAAGTCGATGAAGAGGAAATCCGAGTCAGTCGCAGCCAATGACGAAGATGGTGCCCCTCCTCCCCACCTTGTTCCAATGAGTGAACactcccctgccctctcctcctccgccACGGAAGCAGGCTCTGGtccactttctccctctccctctcgttccCCTGCTCTCTCGATGTCCCGTATGGGGGGTGGCCAGGGGGAGAGAGCCCCCCCTCAACAGGCTGTGGTCAAACCCCACGTCCTCACCCACCTCATAGAAGGCTTCGTCATCCAGGAGGGAGCTGAACCTTtccctGTGAGTGGGCCAGTCAAGGAGCCAGCTAGAGAAGATTTGGCCATGGACAATCTAGACTCTAGTCAGCCTGAGACTGTGACTACAGCTACAGTGCTGAAGTGTGAGTACTGCAAAAGCTTCGCCCCAGCCAGACAGTTTAGAGGGACCAAGCGCTTCTGCTCCTTGACCTGTTCCAAGAGGTATAATGTGAGCTGCAGCCAGCATTTCCGCCTGCGACAGGGGGGTCACCTCTCCCACTCTGACGAGGACGGGGTCCTGAGGAGGAGGGTCCCCCACAGGACCAGCTCCGAGATCGCCAGTGCCAAAATAGCCGGGAGACCCTTACCAGTTAAGTGCCGCTCCGAGTCCAGCCGTTCGGAGGACGTCTCCAGCTGCGGGGAGGACGAGGACGATCCCATGTCCCTCTCCCCGGCCTCCTCTTCTTCCTGCCACCAGCCTCCGCCCACACTCCGATTGGAGGGCTCGGAGGCGCCCCACTTCTTGCCCGGCAGCCCCGCCCAGTGGAGTGTGGAGGAAGTGTCTCAGTTCATATCATCTCTGCAAGGCTGTGAGGAGCTGGCGGACCATTTCCTGTCGCAGGAGATTGACGGACAGGCCCTGCTGCTACTCCGAGAGGAGCATCTCATGTCCACCATGAACATCAAGCTCGGTCCCGCCCTCAAGATCTGTGCCCATATCAACAACCTGAGAGACTGAGAGGAAGAATGAacggaggaaaggagaggtactcccaagagaaaaaggagagaaagaagagaaaggaggTGACAATATGGCTGTTGAAATACTTTTGAACTGTATTAAGTGGGGTCCCTGTTGGTTTTACTATGTTTTGTCAAAACAAACAGAATGAAAAGCGGAGAAAATGAGCCTTCTATCCACAAAATGTGGACCTTAAATGTGGagtattatgttatattatgtgagtgagtgagcaaACCCTTTATGTGTGTAATATTTgcctatatatttaaatataccTTTGTTGGCTGGACTGCCTTTGTTTACGCTGTAGAAAATCATTGTGGAAGTTGTGGCCTTTAAGTAGTTTCGATGATCGAAAAAATAGTACTAGAACGGAGACGTCCGTTTAAAAAACAACGTGTTTCATATCATTCCTTATTTTTACGAGTTGTTATGAATGGTAAGGTCATATAAAGCAATGGACACATTGCCTTTGCCAACCATTACTGGGGAGTAGCTAATATATTGGCCTAAGAAACTTGACAAATAGAGGGAGACATGTTCTGTCCGCTGAAATGAGCAAGTAACTTACAATTGGTGCACAGGATTTATATTAAAAAACGTCCTTTTTAAAATGTCTGTGAAGTGGCAACAATAAGCTATGCGGATCTGAAGTACAGGGATACCCGATCCAAGTGATACCATCCCATAGGCTACTTCAGTTTTCTCAACATGTTTTAGATTATATGCCCTCCtgcttattttaaatgtttttctttttttacctaaacgggatcggtgtcccttaaCCGGGATGGTTGTTGCTCAATATGCGATAATGTGACTAGAAAACATTGTATACAACAGCAAACTttccgggacatagacatgtcttatatgggcaaaAAGCTTaagttcttgttaatctaactgcagtgtccaatttaccGTAGCTATTAAAGgaaaaaaaataccatgctattgtttgaggatagtgcacaacaacaaaacacttttatcacggcaactggtgatacattcacctctgaaggtaaataatgtacttacattcagtaatcttgctctgatttgtcatcctgagggtcccagagataaaatgtagtgtagttttgtttgaagaaatccatttttatattcaaatgtagtaACTGGTttctacagtttgaccccactgctGTCTCTAGCACCACACCCACCCCGCCCGGCCATCTAGAAATAAATTATTTCTAGGGAAATAATGAAAACGCATGTTTTttggtttgtattatcttttaccagatgtaatgtgttatattatcctacattaattacacatttccacaaacttcagtgtttcctttcaaatggtatcaagaatatgcatatccttacttcaggtcctgagctacaggcagttagatttgggtatgtcagtTTAGgcgaaaaaaaaagaaagaagttCAATCCTTAATCTTAAGTAAGGTCTTTGCAGTTTTACACACAGGAAGAGCTATTTACAGTAGGGATAGAAAATGTCACCAAGGTCGTGCTCATTAGGCATCAAACGGAAGGAAACTGACTGAAACAgagagggactacctggacttatCCAATAAGAATCAGTCATTTTCATGctgcgtgccctaatgaacatgaccctgggtTGTGGTCTTCCTCATAGCTTTCCTCATAACTTGCACCTATCCAAGGCTCTTGTGACAGTAGCAATGACTGTGGCTATTATGAATAATCAATAATCTTATGATTAGGTGCTCTGCTAATTGTGTGTTTTTAAATTTAAAGCTTGGCGAAGGCTAGGTCAATATcatgcaaaaaataataataaaccaaCTACTAGGACAACACGCA

Function

NR:

description
polyhomeotic-like protein 1

GO: NA

KEGG:

id description
K11456 PHC1, EDR1; polyhomeotic-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952725.1 False 4648 mRNA 0.50 15 39053727 39065036
XM_021571931.2 True 4895 mRNA 0.50 15 39054011 39065036

Neighbor

gene id symbol gene type direction distance location
LOC110496187 LOC106588439 coding upstream 83 39029457 ~ 39053644 (+)
LOC110496930 LOC106588286 coding upstream 43824 39006914 ~ 39009903 (+)
si:dkey-14o18.2 LOC106588441 coding upstream 48367 38999509 ~ 39005360 (+)
LOC118941155 LOC106588441 coding upstream 54272 38995842 ~ 38999455 (+)
LOC110496182 LOC106588443 coding upstream 95441 38946948 ~ 38958286 (+)
LOC110496189 LOC106588436 coding downstream 19360 39084396 ~ 39112480 (+)
LOC110496191 LOC106588431 coding downstream 115970 39181006 ~ 39187628 (+)
LOC110496193 LOC106588432 coding downstream 130597 39195633 ~ 39203114 (+)
LOC110496194 LOC106588429 coding downstream 143173 39208209 ~ 39218208 (+)
LOC110496196 LOC106588428 coding downstream 156279 39221315 ~ 39229921 (+)
G1545688 NA non-coding upstream 33567 39014889 ~ 39020160 (+)
G1545667 NA non-coding upstream 87889 38960505 ~ 38965838 (+)
LOC110496814 LOC106570002 non-coding upstream 118002 38902212 ~ 38935725 (+)
G1545598 NA non-coding upstream 224037 38829232 ~ 38829690 (+)
G1545597 NA non-coding upstream 225046 38828471 ~ 38828681 (+)
G1546672 NA non-coding downstream 166662 39231698 ~ 39232206 (+)
G1546707 NA non-coding downstream 195236 39260272 ~ 39260791 (+)
G1546717 LOC106588422 non-coding downstream 225146 39290182 ~ 39290983 (+)
G1546713 LOC106569985 non-coding downstream 293375 39358411 ~ 39372481 (+)
G1546759 NA non-coding downstream 309645 39374681 ~ 39384881 (+)
LOC110496176 LOC106588451 other upstream 362458 38677975 ~ 38696088 (+)
G1545533 LOC104965079 other upstream 377723 38675027 ~ 38676004 (+)
LOC110496158 LOC106588463 other upstream 849272 38193174 ~ 38204538 (+)
G1544455 NA other upstream 1997240 37055983 ~ 37056487 (+)
G1544137 NA other upstream 2190544 36862923 ~ 36863183 (+)
G1546605 LOC106588434 other downstream 51452 39116488 ~ 39120019 (+)
G1546641 NA other downstream 68083 39133119 ~ 39146252 (+)
G1546817 LOC106588418 other downstream 402418 39467454 ~ 39469365 (+)
G1547334 LOC107666349 other downstream 696177 39761213 ~ 39761503 (+)

Expression


Co-expression Network