LOC110496189 (LOC106588436)


Basic Information

Item Value
gene id LOC110496189
gene name LOC106588436
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39084396 ~ 39112480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571936.2
ACAGACAGCTGGTTTATTTTTGGGTCAGTGACAGTGTGTCAATGGCCGCAGATGCGTCGGAAAGGAAGGCTCTGAGATACCAACAGACCCTGCTGTATGGGCAATACAGCGAGCACCCGGGTGGGTCTGGCCGCCGGAGAGAGGCCACCCGACTGCTAACAGAGAGACAATGGAAGAAACACGACCACCATCACCATGGTCACCATCCGCAGCATCGCCATGGCCACCATCACCACAGCCACCACCATGGCCACCCCCACAGTCACACACATGGACGCGGGCACCACAGCAGGCACAGGGGTCGGCATCACTCGGATGAGGCAGGACAAGCACATGAGGCTACAGAGCAAGGCAACCCTTTGTCTATAAAGAAACGCCGCTCCTACTCAAAGTGCAGAGACTGTGTAGCGCGGGTACAGAGGTTCCTGGTCACCAAGCTGGGAGAGGACTGGATCTTCCTGGTGCTGCTGGGCGTCTCAATGGCGCTGGTCAGCTGGACCATGGACTACACCAGCGCCAAGAGTCTACAATTGTACAAGTGGATTCACTGGGAGCTGAGGGGTAATGTCCTGCTCCAGTACCTGGCCTGGGTCAGCTATCCTATGGTGCTCATCATGTTCGCCTCCTCCTTCTGCCACCTGGTTGCCCCACAAGCCATCGGCTCTGGTATTCCTGAGCTGAAGACCATTCTCAGAGGCGTAGTGCTGAAGGAGTATCTGACTCTCAAGGCTTTTATTGCCAAGGTCATTGGTCTGACTGCAGGTCTGGGCAGTGGGATGCCAGTGGGGAAAGAGGGCCCATTTGTTCATATAGCCAGCATCTGTGCTGCTGTGCTGAGCAAGTGTATGATGTTCTTCTCAGGAGTCAATCAGagCCCATACTGCTACACAGACATCCTCACAGTTGGCTGTGCAGTTGGGGTGGGCTGTTGTTTCGGTACCCCTCTTGGAGGGGTGCTGTTCAGTATAGAGGTGACGTCCACTTACTTTGCTGTGAGGAACTACTGGAGAGGATATTTTGCCGCCACCTTCAGTGCCTTTATATTCAGAGTGCTCTCTGTGTTCAACAAAGACGCAGTCACCATCACTGCTCTCTTCCGCACCAAGTTCCGCATGGATTTCCCCTTTGACCTCCAGGAGCTGCCAGCGTTTGCCATCATCGGGATCTCCTGCGGGTTCCTGGGGGCCTTCTTCGTCTGGCTGAACCGCCAGGTGGTGCTGTTCATGAGGAAACCCAACGCCATGACACGCTTCCTCACCAGACACCGACTGATTTTCCCCGGTGTTGTGACCTTAGTGATAGCCACCTTGACCTTTCCCCCTGGATTTGGACAGTTCATGGCTGGAGAGCTGATGCCAAGAGAATGCATCAACTCACTGTTCGACAACTTCACCTGGACTAAAATCTGGGGCTCCCCCCTTCCCCCCGGCCTGGGGCGCTCCTCTGCCTGGCTGCACCCCGACGTCAGCGTCTtcgtcatcctcctcctcttcttcattatGAAGTTTTGGATGTCTGCTGTTTCGACGACGATGCCCATCCCTTCTGGAGCCTTCATGCCCGTCTTCATACTCGGAGCCTCTTTCGGCCGACTGGTAGGGGAGATCATGGCTACCCTCTTCCCCCACGGGATTCTGTTTGATGGAATCTTGTACCGCATCATCCCAGGAGGGTACGCTGTCATTGgaGCGGCTGCACTGACCGGGGCGGTGACCCACACGGTGTCCACGGCGGTGATCTGCTTCGAGCTGACGGGCCAGATCTCCCACATCCTGCCCATGATGGTGGCGGTGATCCTGGCCAACATGGTGGCCCAGGGCTTGCAGCCCTCGCTCTACGACTCAATCATCCAGATCAAGAAACTGCCTTACCTCCCTGAGCTGGGCTTTGGACACATCAGCCAGTATAACATCTTTGTGGAGGACATCATGGTTAGGAAAGTGAAGTTTCTCTCGTTACAGTCCACCTACAGGGAGTTGATATTTCTCCTGGACTCCATTTCTCTCAAAACAATACCACTAGTGGATTCAACAGATTCTATGATCTTATTGGGCTCCATCGACCGCTCAGAGCTCCACGCTCTCTGTGATTGGTGGCTCTCTGCAGAGAGGCGGATCTTCAGGCAGGAACAGTGTTTACAGGAACAGAACCAGTATGCCAAAGACAGCTGGGAATCCTTTGCCTTTGTGGATGAAGACGACGAGGAGAGTGGAGATAAGAGCACCCCAGTTCAGGAAGAACGAAATGGCCCCCTGCCGTCCCCTAAACCGCAGGAGCCCTCGTCCAATCACACAGCTCCTGACAAGGGCACTCTTCAGTCCGTTAGGAGGACACTATGGAATATATTCTCCTCCCAAGACAAACCGGCAGAGGGACAGTCACAGGAGCCTTGCGCCAACCCTCTCCTGTCCGATACGATGACACCAGAAGAGATCAAAGAATGGGAGGAGGCTGAGATGGACAAGCCAATGGAAATTGATCAGATCCGAATAGATCCTTCCCCTTTTCAGCTGGTGGAGAGGACCTCGCTACACAAGACCCACACACTCTTCTCATTACTGGGCCTGAGTCATGCCTATGTCACCAGTATCGGAAAACTGGTGGGTGTTGTGGCACTTAAAGAGCTCCAGAAGGCCGTTGAGGCCTCTACGCATAGCGGGGTCCGGCTACGCCCCCCCCTGGCCAGCTTCCGCAACATCAGACGGAAGTCATCCAAGCCCCAGACAACCTCAGCCCCCGCCTCCCCCAccgccccctcctctcctctctcccccgctcCCGTCGTCCCCCACGCCCCTGCACCGCCACCTCCCCCgacacaggaggaggaagagatggcGGTGTGGATCGAGGGCACGAGGCGTGAGGTAGCGGAGgtgaacagcagtagtagtagcagcagcagcggaaCAGGGagcagcagtagcaacagtagcccTTCGCTACCCCACTCGttgcccctctccctcccgctcacctcgcccctctccattcccctcaCTGTCGCCCTCTCCGTCCCCCTTGCTGccttctccacccccctccccgcCCTCCGGGCTGCCTCAGAGCAgcaagtggaggaggaggagagtaatgATGAGGAGCCCATCTAGCCTTATGAGTGCTGTTTTTTttataacatgtttttttttttatatggtgTGAATTTCTCTtttagtctttctctctctcaccttcgagctttccttctctttcctctctcggtgaatgatgtctgtgaatcCATGAGGAGAAATAATCTGGGCTCCATAGTAGTACTTGACTTTTTAAGATCATTGgttttattttgattttttaacttaacctttatttaacccacctttatttaaacaggagaCAATGGCTACCGGTGGTGTTTCAATAGCTATAGATTCAATGAGGCCCACCTTGTGAGGGAGTTCTATGGTCACCATGCTGGGTTGATAGATGACAGTGTTAAATCAGACTGACAACAGCCAACTCAGATGTAATGATGCTAGAGATTTTTTACTTAATAATGCTATGGCTACAAACGGAACAGCCACCATCCATCCCCCTTTGTAATTTAGATTAATCGCTCACTTGATGataacacaaaacaaacacatgcTGAATGATTTTATGATGGTGAAttttcctacccccccccccccccccccctcaaaaaaaaatacaaactgGGGAGTGTTCTTTAGGCATTAGATGGaggaaaatggactgaaacaggagGGACTGTCTCAGGAAATAAGAAATGCTCATATTTGTTTTACGTTGCGAAACATCGTAAACTGTTACTCTttgcatgccctaatgaacaaAACCCGATGTTCTTCTGACACCACTGAGCACAGAAGAAAAACGAAACGGTATGACACAGGGTTTTATGTGAACAGTAGTTGAATTATGAATgaacctctttctctctggctctttctctctggctctttctTCGCTCTCGCTCTACTTCAAACAGTTTCTCAGGTTGCTCCCTATGTCTTTAAACCTGCAGATTTGAGACAGAGGAATCTTTGCTGTCTGTTAAATGAAAAGAATTTCTATTATATTTGGTCAGTCAGTTTTTTTATGtctgaatgtacagtatgtatgtttaTCTGTCTATCTTTAGTcgtgtatttatttatcttttgtAGAGACGATTTTTCTCTGAATGTATAAAACGATGACTAATGTAGCTAATAAAAGGTTAGTAACT
>XM_021571937.2
AGCGCGAGAGGGgcttggagaggggaggagaaatctggagaaagagggggattaCACAGACTGGCAGAGGTAGGGAAAGGCAGAGGATGACTGAAATAGACTGATGGAGGGCAGCAACGTGATGCTGTATGGGCAATACAGCGAGCACCCGGGTGGGTCTGGCCGCCGGAGAGAGGCCACCCGACTGCTAACAGAGAGACAATGGAAGAAACACGACCACCATCACCATGGTCACCATCCGCAGCATCGCCATGGCCACCATCACCACAGCCACCACCATGGCCACCCCCACAGTCACACACATGGACGCGGGCACCACAGCAGGCACAGGGGTCGGCATCACTCGGATGAGGCAGGACAAGCACATGAGGCTACAGAGCAAGGCAACCCTTTGTCTATAAAGAAACGCCGCTCCTACTCAAAGTGCAGAGACTGTGTAGCGCGGGTACAGAGGTTCCTGGTCACCAAGCTGGGAGAGGACTGGATCTTCCTGGTGCTGCTGGGCGTCTCAATGGCGCTGGTCAGCTGGACCATGGACTACACCAGCGCCAAGAGTCTACAATTGTACAAGTGGATTCACTGGGAGCTGAGGGGTAATGTCCTGCTCCAGTACCTGGCCTGGGTCAGCTATCCTATGGTGCTCATCATGTTCGCCTCCTCCTTCTGCCACCTGGTTGCCCCACAAGCCATCGGCTCTGGTATTCCTGAGCTGAAGACCATTCTCAGAGGCGTAGTGCTGAAGGAGTATCTGACTCTCAAGGCTTTTATTGCCAAGGTCATTGGTCTGACTGCAGGTCTGGGCAGTGGGATGCCAGTGGGGAAAGAGGGCCCATTTGTTCATATAGCCAGCATCTGTGCTGCTGTGCTGAGCAAGTGTATGATGTTCTTCTCAGGAGTCAATCAGagCCCATACTGCTACACAGACATCCTCACAGTTGGCTGTGCAGTTGGGGTGGGCTGTTGTTTCGGTACCCCTCTTGGAGGGGTGCTGTTCAGTATAGAGGTGACGTCCACTTACTTTGCTGTGAGGAACTACTGGAGAGGATATTTTGCCGCCACCTTCAGTGCCTTTATATTCAGAGTGCTCTCTGTGTTCAACAAAGACGCAGTCACCATCACTGCTCTCTTCCGCACCAAGTTCCGCATGGATTTCCCCTTTGACCTCCAGGAGCTGCCAGCGTTTGCCATCATCGGGATCTCCTGCGGGTTCCTGGGGGCCTTCTTCGTCTGGCTGAACCGCCAGGTGGTGCTGTTCATGAGGAAACCCAACGCCATGACACGCTTCCTCACCAGACACCGACTGATTTTCCCCGGTGTTGTGACCTTAGTGATAGCCACCTTGACCTTTCCCCCTGGATTTGGACAGTTCATGGCTGGAGAGCTGATGCCAAGAGAATGCATCAACTCACTGTTCGACAACTTCACCTGGACTAAAATCTGGGGCTCCCCCCTTCCCCCCGGCCTGGGGCGCTCCTCTGCCTGGCTGCACCCCGACGTCAGCGTCTtcgtcatcctcctcctcttcttcattatGAAGTTTTGGATGTCTGCTGTTTCGACGACGATGCCCATCCCTTCTGGAGCCTTCATGCCCGTCTTCATACTCGGAGCCTCTTTCGGCCGACTGGTAGGGGAGATCATGGCTACCCTCTTCCCCCACGGGATTCTGTTTGATGGAATCTTGTACCGCATCATCCCAGGAGGGTACGCTGTCATTGgaGCGGCTGCACTGACCGGGGCGGTGACCCACACGGTGTCCACGGCGGTGATCTGCTTCGAGCTGACGGGCCAGATCTCCCACATCCTGCCCATGATGGTGGCGGTGATCCTGGCCAACATGGTGGCCCAGGGCTTGCAGCCCTCGCTCTACGACTCAATCATCCAGATCAAGAAACTGCCTTACCTCCCTGAGCTGGGCTTTGGACACATCAGCCAGTATAACATCTTTGTGGAGGACATCATGGTTAGGAAAGTGAAGTTTCTCTCGTTACAGTCCACCTACAGGGAGTTGATATTTCTCCTGGACTCCATTTCTCTCAAAACAATACCACTAGTGGATTCAACAGATTCTATGATCTTATTGGGCTCCATCGACCGCTCAGAGCTCCACGCTCTCTGTGATTGGTGGCTCTCTGCAGAGAGGCGGATCTTCAGGCAGGAACAGTGTTTACAGGAACAGAACCAGTATGCCAAAGACAGCTGGGAATCCTTTGCCTTTGTGGATGAAGACGACGAGGAGAGTGGAGATAAGAGCACCCCAGTTCAGGAAGAACGAAATGGCCCCCTGCCGTCCCCTAAACCGCAGGAGCCCTCGTCCAATCACACAGCTCCTGACAAGGGCACTCTTCAGTCCGTTAGGAGGACACTATGGAATATATTCTCCTCCCAAGACAAACCGGCAGAGGGACAGTCACAGGAGCCTTGCGCCAACCCTCTCCTGTCCGATACGATGACACCAGAAGAGATCAAAGAATGGGAGGAGGCTGAGATGGACAAGCCAATGGAAATTGATCAGATCCGAATAGATCCTTCCCCTTTTCAGCTGGTGGAGAGGACCTCGCTACACAAGACCCACACACTCTTCTCATTACTGGGCCTGAGTCATGCCTATGTCACCAGTATCGGAAAACTGGTGGGTGTTGTGGCACTTAAAGAGCTCCAGAAGGCCGTTGAGGCCTCTACGCATAGCGGGGTCCGGCTACGCCCCCCCCTGGCCAGCTTCCGCAACATCAGACGGAAGTCATCCAAGCCCCAGACAACCTCAGCCCCCGCCTCCCCCAccgccccctcctctcctctctcccccgctcCCGTCGTCCCCCACGCCCCTGCACCGCCACCTCCCCCgacacaggaggaggaagagatggcGGTGTGGATCGAGGGCACGAGGCGTGAGGTAGCGGAGgtgaacagcagtagtagtagcagcagcagcggaaCAGGGagcagcagtagcaacagtagcccTTCGCTACCCCACTCGttgcccctctccctcccgctcacctcgcccctctccattcccctcaCTGTCGCCCTCTCCGTCCCCCTTGCTGccttctccacccccctccccgcCCTCCGGGCTGCCTCAGAGCAgcaagtggaggaggaggagagtaatgATGAGGAGCCCATCTAGCCTTATGAGTGCTGTTTTTTttataacatgtttttttttttatatggtgTGAATTTCTCTtttagtctttctctctctcaccttcgagctttccttctctttcctctctcggtgaatgatgtctgtgaatcCATGAGGAGAAATAATCTGGGCTCCATAGTAGTACTTGACTTTTTAAGATCATTGgttttattttgattttttaacttaacctttatttaacccacctttatttaaacaggagaCAATGGCTACCGGTGGTGTTTCAATAGCTATAGATTCAATGAGGCCCACCTTGTGAGGGAGTTCTATGGTCACCATGCTGGGTTGATAGATGACAGTGTTAAATCAGACTGACAACAGCCAACTCAGATGTAATGATGCTAGAGATTTTTTACTTAATAATGCTATGGCTACAAACGGAACAGCCACCATCCATCCCCCTTTGTAATTTAGATTAATCGCTCACTTGATGataacacaaaacaaacacatgcTGAATGATTTTATGATGGTGAAttttcctacccccccccccccccccccctcaaaaaaaaatacaaactgGGGAGTGTTCTTTAGGCATTAGATGGaggaaaatggactgaaacaggagGGACTGTCTCAGGAAATAAGAAATGCTCATATTTGTTTTACGTTGCGAAACATCGTAAACTGTTACTCTttgcatgccctaatgaacaaAACCCGATGTTCTTCTGACACCACTGAGCACAGAAGAAAAACGAAACGGTATGACACAGGGTTTTATGTGAACAGTAGTTGAATTATGAATgaacctctttctctctggctctttctctctggctctttctTCGCTCTCGCTCTACTTCAAACAGTTTCTCAGGTTGCTCCCTATGTCTTTAAACCTGCAGATTTGAGACAGAGGAATCTTTGCTGTCTGTTAAATGAAAAGAATTTCTATTATATTTGGTCAGTCAGTTTTTTTATGtctgaatgtacagtatgtatgtttaTCTGTCTATCTTTAGTcgtgtatttatttatcttttgtAGAGACGATTTTTCTCTGAATGTATAAAACGATGACTAATGTAGCTAATAAAAGGTTAGTAACT

Function

NR:

description
chloride channel protein 1-like isoform X2

GO: NA

KEGG:

id description
K05010 CLCN1; chloride channel 1, skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571936.2 False 4213 mRNA 0.51 23 39084396 39112480
XM_021571937.2 True 4245 mRNA 0.52 23 39086750 39112480

Neighbor

gene id symbol gene type direction distance location
LOC110496185 LOC106588438 coding upstream 19360 39053727 ~ 39065036 (+)
LOC110496187 LOC106588439 coding upstream 30752 39029457 ~ 39053644 (+)
LOC110496930 LOC106588286 coding upstream 74493 39006914 ~ 39009903 (+)
si:dkey-14o18.2 LOC106588441 coding upstream 79036 38999509 ~ 39005360 (+)
LOC118941155 LOC106588441 coding upstream 84941 38995842 ~ 38999455 (+)
LOC110496191 LOC106588431 coding downstream 68526 39181006 ~ 39187628 (+)
LOC110496193 LOC106588432 coding downstream 83153 39195633 ~ 39203114 (+)
LOC110496194 LOC106588429 coding downstream 95729 39208209 ~ 39218208 (+)
LOC110496196 LOC106588428 coding downstream 108835 39221315 ~ 39229921 (+)
LOC110496201 LOC106588424 coding downstream 214357 39326837 ~ 39357124 (+)
G1545688 NA non-coding upstream 64236 39014889 ~ 39020160 (+)
G1545667 NA non-coding upstream 118558 38960505 ~ 38965838 (+)
LOC110496814 LOC106570002 non-coding upstream 148671 38902212 ~ 38935725 (+)
G1545598 NA non-coding upstream 254706 38829232 ~ 38829690 (+)
G1545597 NA non-coding upstream 255715 38828471 ~ 38828681 (+)
G1546672 NA non-coding downstream 119218 39231698 ~ 39232206 (+)
G1546707 NA non-coding downstream 147792 39260272 ~ 39260791 (+)
G1546717 LOC106588422 non-coding downstream 177702 39290182 ~ 39290983 (+)
G1546713 LOC106569985 non-coding downstream 245931 39358411 ~ 39372481 (+)
G1546759 NA non-coding downstream 262201 39374681 ~ 39384881 (+)
LOC110496176 LOC106588451 other upstream 393127 38677975 ~ 38696088 (+)
G1545533 LOC104965079 other upstream 408392 38675027 ~ 38676004 (+)
LOC110496158 LOC106588463 other upstream 879941 38193174 ~ 38204538 (+)
G1544455 NA other upstream 2027909 37055983 ~ 37056487 (+)
G1544137 NA other upstream 2221213 36862923 ~ 36863183 (+)
G1546605 LOC106588434 other downstream 4008 39116488 ~ 39120019 (+)
G1546641 NA other downstream 20639 39133119 ~ 39146252 (+)
G1546817 LOC106588418 other downstream 354974 39467454 ~ 39469365 (+)
G1547334 LOC107666349 other downstream 648733 39761213 ~ 39761503 (+)

Expression

LOC110496189(LOC106588436) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
End of interactive chart.

LOC110496189(LOC106588436) Expression in each Bioproject

Bar chart with 21 bars.
LOC110496189(LOC106588436) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network