LOC110496196 (LOC106588428)


Basic Information

Item Value
gene id LOC110496196
gene name LOC106588428
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39221315 ~ 39229921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571954.2
ACATTTCTGTTTTGCAGTGGATTTACTCTTAGAAGCTGACATGAGTTACTTTCAAGCATCATTGGTCTGAGATAACCGAAACAAAGCAGTAGGCTCTCCCTAGAGGTTCACAAAAGCAAGTCAGAGCAGCTGTAGTTTTTCTGATGGAATTATCAATTCTGAGAGAGCGCACTTGTCTCAGACTTTTTCTCAGAAACAAGTGATCATTTCCATTGGCTATATTTTTCAATAGTCGACTATATCGCTCCAAAACTTTGGATCTAGAGTTTTGACTTCAAATATAAGTGTTTTTACAACCATCGATTGGGACGGTCACATACAAGGGAACCTGCTGCATCACTCTGTGTGCCTGCCGACTGCGAGTCGTGCGTCAAAGGCTCAACGACATTATCCACAGGCGGCGCATCGCAGTTGTTTCAGCAGAGAGTTTGGAATAAAGTGGACTAAAGTGACAGAAGACGTCTGGATTCCTACGGAGTACTGAACCAATCGTTCCCTTGTCTGTGGATAGTACTACTTTCACAAACATAgctatagtctctctctcgctcgctccctctctctctctctctctctctctctctctcactgtgcgagccctccctctcctctctcccttgaaAGCGGATTATTTATTATAAAGCAGCTACCATCGACATGTCGACCCCAGACGCAGGAACCTCGGGAGCCGCTGAGGGAGAGGGGGGGCCTTCGGCCGCAGCACCCAACCTCACCAGTAACCGACGGCTACAGCAGACACAGGCACAGGTGGACGAGGTTGTGGACATCATGCGTGTGAACGTGGACAAGGTGTTGGAGAGGGATCAGAGACTGTCGGAGCTGGACGACAGGGCCGACGCGCTGCAAGCCGGGGCCTCACAGTTCGAGAGCAGTGCTGCCAAGCTGAAGAACAAGTACTGGTGGAAAAACCTCAAGatgatgataataatgggAATCATAGGAGTCATATGTGTTGGAGTTGTCTTCTTGTATTTCTATTATTGAGCTGGCCTCTTCACGGACAGCAAGCGCAAGGCGAGATACTGAAATGCCGCCAAATCCACATGTGAATCCTGCCTTCCCTTGACccctccttcatccctctcttcatcccaaTGCCTTCCATCTGAAAACCACCATGCACGCGTAGACGTCGGCGCAgtgcctctccctcttctatccTCACGGTTGTTCTCTGCCgctgtgtccttgagcaaggcacttaatccctACAATTGCTCTGGCGGCACTGCTCGGTGGCTGACGCTGTGCTTCCCCGGACcttgtgggtgtgcgtgtgtaagGTTGGGTATTGTGACAGAAAATCAATCAACTTCTGTTTTaaaatggacaataaagtatcTATTCTATTTTTGGCGCTCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K13504 VAMP2; vesicle-associated membrane protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571954.2 True 1384 mRNA 0.49 5 39221315 39229921

Neighbor

gene id symbol gene type direction distance location
LOC110496194 LOC106588429 coding upstream 3107 39208209 ~ 39218208 (+)
LOC110496193 LOC106588432 coding upstream 18201 39195633 ~ 39203114 (+)
LOC110496191 LOC106588431 coding upstream 33687 39181006 ~ 39187628 (+)
LOC110496189 LOC106588436 coding upstream 108835 39084396 ~ 39112480 (+)
LOC110496185 LOC106588438 coding upstream 156279 39053727 ~ 39065036 (+)
LOC110496201 LOC106588424 coding downstream 96916 39326837 ~ 39357124 (+)
LOC118940977 NA coding downstream 355949 39585870 ~ 39586862 (+)
LOC118941156 ssl-2 coding downstream 389798 39619719 ~ 39622185 (+)
LOC110496217 LOC106569969 coding downstream 835339 40065260 ~ 40077268 (+)
kifc1 LOC106588407 coding downstream 865907 40095828 ~ 40101459 (+)
G1545688 NA non-coding upstream 201155 39014889 ~ 39020160 (+)
G1545667 NA non-coding upstream 255477 38960505 ~ 38965838 (+)
LOC110496814 LOC106570002 non-coding upstream 285590 38902212 ~ 38935725 (+)
G1545598 NA non-coding upstream 391625 38829232 ~ 38829690 (+)
G1545597 NA non-coding upstream 392634 38828471 ~ 38828681 (+)
G1546672 NA non-coding downstream 1777 39231698 ~ 39232206 (+)
G1546707 NA non-coding downstream 30351 39260272 ~ 39260791 (+)
G1546717 LOC106588422 non-coding downstream 60261 39290182 ~ 39290983 (+)
G1546713 LOC106569985 non-coding downstream 128490 39358411 ~ 39372481 (+)
G1546759 NA non-coding downstream 144760 39374681 ~ 39384881 (+)
G1546641 NA other upstream 75063 39133119 ~ 39146252 (+)
G1546605 LOC106588434 other upstream 101296 39116488 ~ 39120019 (+)
LOC110496176 LOC106588451 other upstream 530046 38677975 ~ 38696088 (+)
G1545533 LOC104965079 other upstream 545311 38675027 ~ 38676004 (+)
LOC110496158 LOC106588463 other upstream 1016860 38193174 ~ 38204538 (+)
G1546817 LOC106588418 other downstream 237533 39467454 ~ 39469365 (+)
G1547334 LOC107666349 other downstream 531292 39761213 ~ 39761503 (+)
G1547652 LOC106588410 other downstream 805596 40035517 ~ 40040594 (+)
LOC110496221 LOC106588406 other downstream 876074 40103731 ~ 40110006 (+)

Expression


Co-expression Network