LOC110496198 (LOC106588427)


Basic Information

Item Value
gene id LOC110496198
gene name LOC106588427
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39247198 ~ 39262456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952730.1
ACAGGCATCAACTCACCACGTAGTTTATTCTTAACGTTTGTCCAGAGTGAGGACAGAAAGGTTTAGGAATAAACGTGGCGAGTGAAAAACGTAATTCAATAGCCCACGCACTACCCGGAATCTTATTCTGCCGCTATACAACTTTGTATTTACTTAGTttttggaacgttccacaaattatacccacccttGTCACTTGGTTAGAATGGAAATTCGTCCTCAGCCTTTCCCAACACCCCAGACACACACGTTAAAGGTTCAATACAGCCGTTTTTTAAAATCGAAATATcaaagtgcctggattaggacctgcgctgCTTCTTGTGTTAGGTAGAGTCATACTCAACCCAtcttgtagagcatgaacctacAGGAGCGAAttactgctttgatgtttgcagtgAACAACAGGGTGTTTTccaggttctttgcactctgggtgggggacactgtggagttgtcaaccgtgatggagaggtcttgaaGAGGGCAGGCCTTCcccaggaggaagagcagctccatcTAGTTGAGATTGAGGTCGTCCTCTTCCTCTGTCGTCTCTGCGTCTTCTGGTTCCTCCATTGCGGCTGGTGTCCGCAGCTCTATGGCAAGTTGTTCAGCGCAGAGACACAATGGACTACGGGTTGGTGGAGGAGTTTGTGACCACTGTGTTGGAAATAACCCCTGATCTGATGAGTTACAGAGAGAAAGCCCAGCTCGTCATGGGCCTGCAAGCACAGCTGGTTCTGGAGTTGTGTCGCTCTGATCATTCAGCCGACCCGGAGACCATCCAGCCACACCTGAGCAGGATGAGGACCTGCATCATCACTCATAGAGAAAAGGAGATAGATACAGAGGTGGAGGCATCAGAGTCAAACTTCTTGGAACTTGTCCAAACTCTTCTAGATGACCCACTTGAGAGGGAACACTTCTTCCAGGAAGTTTTTCCAGAGGAATTTGGCCCCATGTATGACACGGCACTGCAGACTCTGATGTGGGAGTTCCTCTCCAGGCTGGAGAAACTGCTCCCAACACCAACATTTCAACAGACTGCATCCTGGCTCAGACCTGCCCCCTCTATGCTGAAGGAGTGTGCACAGTCTGTGACTCAACCTCAGCCTTTGAAGACTCTCCTCCAACACCACAGATGCCATGGCCATTTGTTCGCTAATGCTCATTCATCTTGTGCTGATGATTTCATCCTCTCTTCACTGTCTCACAAGTTCTCGGAGAGGGTGGAAATGGACATCGATGAAGCACGCTCACATAGCCAGTCTGTAGCCACATGTGCACCCAGAAAAGAAAGGGACACTTTGATAGAGCAAGATCATGCAGAGAAGGAGCTGGGGAAGAGTTTGGACACGGTTAAGAAGGCAGTGGAAATGACGGATAGAAGGAACGAAGAATGGGGAGAGGAGAACTATGAGGAGAGACTGCAGTATCAGTTGGCTTATAATGTTTTACAGGTCGAGGTTGTCGATGGAGAAGACATGTCCTCAACGTCATCGACGACAGCCGACAATGTCGGACAGACCTGGACCCCAAAGGAAACGGAAGCGCTGATCTCTGTATGGTCAAAGAAACCGATTCTTCAGGAGATGGAACGGAGTTACAGAGAAAAACATGTGTACGGTGACATTTCAGAGCAGATGAAGGAGCTTGGCGTCAAAAGGACGTGGAAGCAGTGTCAAACAAAGATAAAGGACATGAAGCACCGCTACAGACGAGCACTGAGGAACCCAAGCAGTAGTGGCCGAGCGACCTGTCCGTTCTTTTCTGAACTGCACACCTTTCTCGCCGCCACGCCTGATGCAACTGATACCCAGATGCCTGAGTCGAAGGAAGCGGTCAAGGTTTCGGATCCAGAAGTCATGTTCTGCGATCAGGATGAAGGGCCTTCTGTGGATGTCAAGTTAGAGAATCTACACGAGGAAATGGCTTCCGGAAAGGAGACACACAAGACACTCACCGGAGTGAGAGCAGACGCGAGGAAAGGGGGCGAGGCTTTTCACAGCCCTCAGAGTGACAGCAGGGTGAAAATCGGAGGAATATCCCACCGTTGCGATCAGATGGTCGAAGACACGTCAGACTTGGACCTTCAGCCCGTAGTGATGTTGACGCAACTTGATGAGACCCTTCTGATGACCGGTGGTGATCCTCGTCCTGCTTCCCATACCACGGGGCAGTCTTCGAAAAGAAGCAAGCGCGTCAAAATATGCTCCttttgtgggaagagttttgttgaAGCAAAGGATTTGACAACACACATGAGATCTCACACTGAGCAGAGCCCTCACCAGTGTGGTGAAGGCTTTGACCATCTGGACGACTTACAAAAACATTGGCAGAATGATTGTGAGGAGATGATGAAACAGGAGGTCAATGAACATCAGCATGGAAAGGACAGGATCTCGGGAGAGTCCAGTAATGCAAGTACTGATCCAAAAACATGCCATCTATGTCATGAGACCTTTGAATTTCAGTGTGTGTTGAAAAACCGTCTTATTGTGTTTCACAAAGGCAAAAGCCTTTATAAGTGTCCTGTGTGTATGAAGGGTTTTGGGTACCTCCGTGATTTGGAGAAAGACCAGAGTAAAAAAAGAGGTCGTCCTACAAGTGATGCCGTCAAAAAAAGGAAGGAGTTGGGGTCAAATGGAAATGTTGCCGGACTGAACTCGACCCCCAACAAGTGCCCTGACGTCTTCAAGTGCTCCTTTTGTGAAGAGATCTTTTCTCGGTGCATGGACCTGAAGAGCCACTACAGTCGTACTCATCAATTTACTGGGCCGTTCCCCTGCCCTTCTTGTCAGACGACTTTTGTTTCGTTAACTGAGCTGCGCTTACATCAGAGAAATGAGTCCACTCCTTACCAGTGCTCTTTGTGCCAGCGCTCATTCTTATCACTCGACAAGCTGACTGTTCATGAGAGAATTCACACAGGGGAAAAACCGTACCTCTGTGCTGAGTGTGGAAAAAGTTTCCGGGATGCAAAAACCCTGGAAGAACACTCTAAGATTCATGTTGAGGGAGAACTCCACACCTGCTCCCATTGTGGGAAAAGTTTCAAGCGAAAAGAACTATTGAAACAACACATGTTAAATCACAGAGATGCCGCTTTCATCTGCCCAGACTGTGGGAAGAAGTTTTTTCGGTTGGTATGGTTAAGAAGGCATATGTTAATCCACACTGGCGAGAGACCGTTCCTCTGTGATCTCTGCGGGAAAGGTTTCAAATCTACAGTCGAATTGAGATTGCACACCCGGACACACACTGGAGAACGGCCATTCAAGTGCCCCGAATGTGGAACAAGTTTTAAGCAGAAGTGTCATCTGCAGATACATCGGCGGACACACACAGGGGAGCGGCCGTATCCGTGCACCGTATGCGATAAACGCTTTTATGTCAGCAAAGATAGAAAACGACATATGCTCATCCATACTGGAGAGAAGCCGTTCAAATGTCAAGTGTGTGGCATGGCGTTCAACCGTAAAGGGCATTTGAGGGTACACCAACAAACCAAGAGGTGTTCCTATAGGCACACAAGTCCCCTACGTAACACATCATTATAATAAGTGGCTTCCTGACTGACAGAACTAGACCTGTTCCTGTAAGCCACATTTTAAGATGTGCGTCCCGTCAAGTAATAATATGAAGTTAAGAAAAAGTGTTTTACAAAGTGACAACAGGAATATAAACCACGGAGTAGTAGCctatgtttgttttttgttaAAAAACAACTTAAAAGGACGTGTTATGTATGTGACTgttattaaatcgttttttaaaGGCA
>XM_021571958.2
TTTTCAGAAGGCACTCCTTCAGAGAAGTTTTCAAAGTACATAATATACATAAAATGTGGAGCAGAAATGCTTCCCGGTAATGTGGAATTATGTCAGACATGCTATGATTGGATTGATACTATCTACTTGGCTGTTTTGCAGAGAAACGGCCAACTGATGCTGTCCTTCGGCAAGTCCGTTTGTATTCCTTTCGTTCTATTTCCTAACATCTTTCGATATGGCAATATTCAGATACGCAGGACGACTTCAAAGAGGACCACCTGGAACTCGACCATTGCTTCTTGTAGATGACGTCATGTTTGGAAGTAGCCCACCACTTTGTTTAGGCGACCAAAGGTATTGAATGTAGCTACTACCACTGATATTAACCATGTGCTAATTTACTAGATTATGTATGCTACCATCAACAAAACTAGATCAACATTGTCGACAATGTCATTGGCAGACGATGTCGAATGGCCATGGTCGCCGGTGGAGACAAAGGCGCTGATCTCTGTATGGTCAGACGAACAGAATATTCTGAAAATGGAGCAAACGTGTAGAAACAAACATGTTTACAGGGAAATTTCGGAGCGGCTAAATGACCTTGGCGTCAAACGGACGTGGAAGCAGTGTCAAAATAAGATGAAGGCCTTGAAGTGGAGATACAGACAAACACGCAGAGACCCAAGCAGTAGTGACCTAACAACCTTTCCATTATTTTCCGAACTGGACGAATTTCTCGCCGCCATGCCTGATCTGACTGAGTCCAAGGAAACTGGCGACGAGGAAGATGGTCGTCCTCTTCCTCTGTCGTCTCTGCGTCTTCTGGTTCCTCCATTGCGGCTGGTGTCCGCAGCTCTATGGCAAGTTGTTCAGCGCAGAGACACAATGGACTACGGGTTGGTGGAGGAGTTTGTGACCACTGTGTTGGAAATAACCCCTGATCTGATGAGTTACAGAGAGAAAGCCCAGCTCGTCATGGGCCTGCAAGCACAGCTGGTTCTGGAGTTGTGTCGCTCTGATCATTCAGCCGACCCGGAGACCATCCAGCCACACCTGAGCAGGATGAGGACCTGCATCATCACTCATAGAGAAAAGGAGATAGATACAGAGGTGGAGGCATCAGAGTCAAACTTCTTGGAACTTGTCCAAACTCTTCTAGATGACCCACTTGAGAGGGAACACTTCTTCCAGGAAGTTTTTCCAGAGGAATTTGGCCCCATGTATGACACGGCACTGCAGACTCTGATGTGGGAGTTCCTCTCCAGGCTGGAGAAACTGCTCCCAACACCAACATTTCAACAGACTGCATCCTGGCTCAGACCTGCCCCCTCTATGCTGAAGGAGTGTGCACAGTCTGTGACTCAACCTCAGCCTTTGAAGACTCTCCTCCAACACCACAGATGCCATGGCCATTTGTTCGCTAATGCTCATTCATCTTGTGCTGATGATTTCATCCTCTCTTCACTGTCTCACAAGTTCTCGGAGAGGGTGGAAATGGACATCGATGAAGCACGCTCACATAGCCAGTCTGTAGCCACATGTGCACCCAGAAAAGAAAGGGACACTTTGATAGAGCAAGATCATGCAGAGAAGGAGCTGGGGAAGAGTTTGGACACGGTTAAGAAGGCAGTGGAAATGACGGATAGAAGGAACGAAGAATGGGGAGAGGAGAACTATGAGGAGAGACTGCAGTATCAGTTGGCTTATAATGTTTTACAGGTCGAGGTTGTCGATGGAGAAGACATGTCCTCAACGTCATCGACGACAGCCGACAATGTCGGACAGACCTGGACCCCAAAGGAAACGGAAGCGCTGATCTCTGTATGGTCAAAGAAACCGATTCTTCAGGAGATGGAACGGAGTTACAGAGAAAAACATGTGTACGGTGACATTTCAGAGCAGATGAAGGAGCTTGGCGTCAAAAGGACGTGGAAGCAGTGTCAAACAAAGATAAAGGACATGAAGCACCGCTACAGACGAGCACTGAGGAACCCAAGCAGTAGTGGCCGAGCGACCTGTCCGTTCTTTTCTGAACTGCACACCTTTCTCGCCGCCACGCCTGATGCAACTGATACCCAGATGCCTGAGTCGAAGGAAGCGGTCAAGGTTTCGGATCCAGAAGTCATGTTCTGCGATCAGGATGAAGGGCCTTCTGTGGATGTCAAGTTAGAGAATCTACACGAGGAAATGGCTTCCGGAAAGGAGACACACAAGACACTCACCGGAGTGAGAGCAGACGCGAGGAAAGGGGGCGAGGCTTTTCACAGCCCTCAGAGTGACAGCAGGGTGAAAATCGGAGGAATATCCCACCGTTGCGATCAGATGGTCGAAGACACGTCAGACTTGGACCTTCAGCCCGTAGTGATGTTGACGCAACTTGATGAGACCCTTCTGATGACCGGTGGTGATCCTCGTCCTGCTTCCCATACCACGGGGCAGTCTTCGAAAAGAAGCAAGCGCGTCAAAATATGCTCCttttgtgggaagagttttgttgaAGCAAAGGATTTGACAACACACATGAGATCTCACACTGAGCAGAGCCCTCACCAGTGTGGTGAAGGCTTTGACCATCTGGACGACTTACAAAAACATTGGCAGAATGATTGTGAGGAGATGATGAAACAGGAGGTCAATGAACATCAGCATGGAAAGGACAGGATCTCGGGAGAGTCCAGTAATGCAAGTACTGATCCAAAAACATGCCATCTATGTCATGAGACCTTTGAATTTCAGTGTGTGTTGAAAAACCGTCTTATTGTGTTTCACAAAGGCAAAAGCCTTTATAAGTGTCCTGTGTGTATGAAGGGTTTTGGGTACCTCCGTGATTTGGAGAAAGACCAGAGTAAAAAAAGAGGTCGTCCTACAAGTGATGCCGTCAAAAAAAGGAAGGAGTTGGGGTCAAATGGAAATGTTGCCGGACTGAACTCGACCCCCAACAAGTGCCCTGACGTCTTCAAGTGCTCCTTTTGTGAAGAGATCTTTTCTCGGTGCATGGACCTGAAGAGCCACTACAGTCGTACTCATCAATTTACTGGGCCGTTCCCCTGCCCTTCTTGTCAGACGACTTTTGTTTCGTTAACTGAGCTGCGCTTACATCAGAGAAATGAGTCCACTCCTTACCAGTGCTCTTTGTGCCAGCGCTCATTCTTATCACTCGACAAGCTGACTGTTCATGAGAGAATTCACACAGGGGAAAAACCGTACCTCTGTGCTGAGTGTGGAAAAAGTTTCCGGGATGCAAAAACCCTGGAAGAACACTCTAAGATTCATGTTGAGGGAGAACTCCACACCTGCTCCCATTGTGGGAAAAGTTTCAAGCGAAAAGAACTATTGAAACAACACATGTTAAATCACAGAGATGCCGCTTTCATCTGCCCAGACTGTGGGAAGAAGTTTTTTCGGTTGGTATGGTTAAGAAGGCATATGTTAATCCACACTGGCGAGAGACCGTTCCTCTGTGATCTCTGCGGGAAAGGTTTCAAATCTACAGTCGAATTGAGATTGCACACCCGGACACACACTGGAGAACGGCCATTCAAGTGCCCCGAATGTGGAACAAGTTTTAAGCAGAAGTGTCATCTGCAGATACATCGGCGGACACACACAGGGGAGCGGCCGTATCCGTGCACCGTATGCGATAAACGCTTTTATGTCAGCAAAGATAGAAAACGACATATGCTCATCCATACTGGAGAGAAGCCGTTCAAATGTCAAGTGTGTGGCATGGCGTTCAACCGTAAAGGGCATTTGAGGGTACACCAACAAACCAAGAGGTGTTCCTATAGGCACACAAGTCCCCTACGTAACACATCATTATAATAAGTGGCTTCCTGACTGACAGAACTAGACCTGTTCCTGTAAGCCACATTTTAAGATGTGCGTCCCGTCAAGTAATAATATGAAGTTAAGAAAAAGTGTTTTACAAAGTGACAACAGGAATATAAACCACGGAGTAGTAGCctatgtttgttttttgttaAAAAACAACTTAAAAGGACGTGTTATGTATGTGACTgttattaaatcgttttttaaaGGCA

Function

NR:

description
zinc finger and SCAN domain-containing protein 20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952730.1 False 3790 mRNA 0.47 8 39247198 39261373
XM_021571958.2 True 4028 mRNA 0.47 8 39247198 39262456

Neighbor

gene id symbol gene type direction distance location
LOC110496197 LOC106588427 coding downstream 2143 39233121 ~ 39245055 (-)
LOC110496190 LOC106588434 coding downstream 100603 39116591 ~ 39146595 (-)
LOC110496188 LOC106588437 coding downstream 165475 39066864 ~ 39081723 (-)
LOC110496183 LOC106588442 coding downstream 274767 38964087 ~ 38972431 (-)
LOC110496175 LOC104924380 coding downstream 571821 38674378 ~ 38676029 (-)
LOC110496200 LOC106588422 coding upstream 7128 39269584 ~ 39295941 (-)
LOC110496203 LOC106588426 coding upstream 46363 39308819 ~ 39327038 (-)
LOC110496202 LOC106569985 coding upstream 95942 39358398 ~ 39372505 (-)
LOC110496204 LOC106588420 coding upstream 113987 39376443 ~ 39383490 (-)
LOC110496205 LOC100136448 coding upstream 126759 39389215 ~ 39413466 (-)
G1546933 NA non-coding downstream 14118 39232559 ~ 39233080 (-)
G1546932 NA non-coding downstream 15003 39231690 ~ 39232195 (-)
G1546924 NA non-coding downstream 59572 39117754 ~ 39187626 (-)
G1546550 LOC106588439 non-coding downstream 193578 39050510 ~ 39053620 (-)
G1547038 NA non-coding upstream 465 39262921 ~ 39263179 (-)
G1547039 NA non-coding upstream 1417 39263873 ~ 39264254 (-)
G1547041 NA non-coding upstream 6160 39268616 ~ 39268818 (-)
G1547052 NA non-coding upstream 112120 39374576 ~ 39384675 (-)
G1547103 NA non-coding upstream 151469 39413925 ~ 39414131 (-)
G1546396 LOC106588446 other downstream 459397 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 473514 38768097 ~ 38773684 (-)
LOC110496167 LOC106588455 other downstream 683880 38557052 ~ 38563365 (-)
G1546053 NA other downstream 1033149 38165250 ~ 38214049 (-)
LOC110496208 LOC106588417 other upstream 363319 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 380399 39642841 ~ 39688750 (-)
G1548367 NA other upstream 1123514 40385970 ~ 40391883 (-)
G1548517 NA other upstream 1377719 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1643231 40902519 ~ 40908744 (-)

Expression


Co-expression Network